Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006138

Physical Location & Seq

Genomic Coordinates Reverse (-)

68616171 .. 68629519

Gene Structure 13349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG379300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGACAGTGACATTGGGGACTGCACTCCTTGACATGTATGCGAAATGTGGGAACATGAGTAAGGCCATGCAAGTGTTTTGGGGGATGAAGGAAAAGAATGTGTATACGTGGAGTGTTGCCTTGGGGGGACTAGCTATGAATGGATTTGGTGACAAGTGTCTTGAGCTTTTCTCAGTCATGGAGAAATTGAGATGCTGCATTGCTTGTTTCAAAGGTTTTCTGCCAAAGACGATTAACTGGTCTCTTATGATGTCATTGTTCATATGCCTTTCAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

92

Amino Acids

10.28

Weight (kDa)

8.82

Isoelectric Point (pI)

22.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40405 AT5G40405
fragaria_vesca	FvH4_4g32050
malus_domestica	MD13G1079400.v1.1 MD16G1079200.v1.1 MD16G1079300.v1.1
prunus_persica	Prupe.1G267400_v2.0.a1
pyrus_communis	pycom13g06910 pycom16g06850
rosa_chinensis	RchiOBHm_Chr1g0381771 RchiOBHm_Chr4g0440691 RchiOBHm_Chr4g0440711
rosa_laevigata	RLG00000006158 RLG00000008805 RLG00000026207
rosa_multiflora	Rmu_sc0000463.1_g000002 Rmu_sc0008418.1_g000010
rosa_roxburghii	Rroxscaffold_5G00381500 Rroxscaffold_7G00185760
rosa_rugosa	Rorug01G0430800 Rorug04G0327600
rosa_samantha	Rh1BG411600 Rh4AG379300 Rh4BG131000 Rh4BG392100
rosa_wichuraiana	Rw1G039640 Rw4G011000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	2 cut(s)	211, 273
AluBI	AGCT	2 cut(s)	134, 166
AluI	AGCT	2 cut(s)	134, 166
Alw26I	GTCTC	1 cut(s)	246
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
BmsI	GCATC	1 cut(s)	182
BoxI	GACNNNNGTC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpuEI	CTTGAG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	65
BslFI	GGGAC	2 cut(s)	31, 141
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	2 cut(s)	31, 141
BsnI	GGCC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	246
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	120
BssNAI	GTATAC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	120
Bst1107I	GTATAC	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	7
BstBAI	YACGTR	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	37
BstPAI	GACNNNNGTC	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	182
BstZ17I	GTATAC	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	12
CviAII	CATG	4 cut(s)	34, 55, 67, 178
CviJI	RGCY	3 cut(s)	65, 134, 166
CviKI_1	RGCY	3 cut(s)	65, 134, 166
DdeI	CTNAG	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	4 cut(s)	37, 58, 70, 181
FaqI	GGGAC	2 cut(s)	31, 141
FatI	CATG	4 cut(s)	33, 54, 66, 177
FauNDI	CATATG	1 cut(s)	263
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	65
Hin1II	CATG	4 cut(s)	37, 58, 70, 181
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	3 cut(s)	23, 70, 198
HpyF3I	CTNAG	1 cut(s)	172
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	4 cut(s)	37, 58, 70, 181
LpnPI	CCDG	1 cut(s)	223
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	2 cut(s)	7, 149
MluCI	AATT	2 cut(s)	185, 273
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	71
NdeI	CATATG	1 cut(s)	263
NlaIII	CATG	4 cut(s)	37, 58, 70, 181
NmuCI	GTSAC	2 cut(s)	7, 149
NspI	RCATGY	1 cut(s)	37
PciI	ACATGT	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	197
Ppu21I	YACGTR	1 cut(s)	108
PscI	ACATGT	1 cut(s)	33
PshAI	GACNNNNGTC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	1 cut(s)	196
SetI	ASST	4 cut(s)	110, 136, 168, 217
SfaNI	GCATC	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	185, 273
SspMI	CTAG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	1 cut(s)	110
TasI	AATT	2 cut(s)	185, 273
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	7, 149
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	2 cut(s)	7, 149
TspDTI	ATGAA	3 cut(s)	101, 152, 250
TspRI	CASTG	1 cut(s)	12
XceI	RCATGY	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	104
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.