Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006138

Physical Location & Seq

Genomic Coordinates Reverse (-)

4444654 .. 4445472

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAAAACCAACGACCCTCACTTTGTCGCCGCCATTGCGCTCAGAAACCCCACCAATTTGTATTATTCCAATCAAGTCCTCGACCAATGCCAGAACCCAACAGTCTTCGCCTTCAACTCCATGATCAGACCTATTCCAAAGGCTCCACGCCATCCAAAAGTTTTGACTTTTACAGCAGAATTCTCCGATCAAGTGACAATCTTTCACCCTATAACTACACCTTCAACTTCTTGGTTCGCACGTGCGCACAGCTTTTGGCACGTGAGACCAGTCCCTCCGGCCATAGCGGCTTGATAAAAACGGGTTTGAGAACGACCCACGTAGTGTTTGAGAAAACTTTTGGGCCTGATCTGGTATGGCAGACTGCTATGGTGAGTGCTTGCGTAAGGTGCGGTGATGTTGGTTTTGCACGGGAGCTGTTTGATGAAATGCCTCAGAGGGACCCCATTGCTTGGAATGCGATGATTGCAGGTTATGGTGTGAGGGTGAATGAGGTGTATATGGTTTCGGTCTTATCAGCATGTTCCCACATGGGAGCATTGGATCAAGTTAGATGTGCTCATGCATATATAGAGAGGAACAAGGTGCGGATGACAATGACGTTGGGGACTGCACTCATCGACATGTATGTGAAATGCGGGAACATGAAAAAGGCCATGGAGGTGTTTTGGGATGAAAGAAAAGAATGCGTATACGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

235

Amino Acids

26.71

Weight (kDa)

8.85

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40405 AT5G40405
fragaria_vesca	FvH4_4g32050
malus_domestica	MD13G1079400.v1.1 MD16G1079200.v1.1 MD16G1079300.v1.1
prunus_persica	Prupe.1G267400_v2.0.a1
pyrus_communis	pycom13g06910 pycom16g06850
rosa_chinensis	RchiOBHm_Chr1g0381771 RchiOBHm_Chr4g0440691 RchiOBHm_Chr4g0440711
rosa_laevigata	RLG00000006158 RLG00000008805 RLG00000026207
rosa_multiflora	Rmu_sc0000463.1_g000002 Rmu_sc0008418.1_g000010
rosa_roxburghii	Rroxscaffold_5G00381500 Rroxscaffold_7G00185760
rosa_rugosa	Rorug01G0430800 Rorug04G0327600
rosa_samantha	Rh1BG411600 Rh4AG379300 Rh4BG131000 Rh4BG392100
rosa_wichuraiana	Rw1G039640 Rw4G011000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	461
AccB7I	CCANNNNNTGG	1 cut(s)	453
AccI	GTMKAC	1 cut(s)	693
AciI	CCGC	5 cut(s)	31, 288, 393, 589, 639
AclWI	GGATC	1 cut(s)	552
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	180
AcvI	CACGTG	2 cut(s)	243, 263
AdeI	CACNNNGTG	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	453
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	2 cut(s)	116, 226
AluBI	AGCT	2 cut(s)	253, 418
AluI	AGCT	2 cut(s)	253, 418
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	552
AoxI	GGCC	3 cut(s)	280, 344, 654
ApoI	RAATTY	1 cut(s)	180
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	41, 248
AspS9I	GGNCC	2 cut(s)	344, 442
AsuHPI	GGTGA	4 cut(s)	198, 385, 407, 499
AvaII	GGWCC	1 cut(s)	442
BbrPI	CACGTG	2 cut(s)	243, 263
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	562
BccI	CCATC	1 cut(s)	160
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	461
BglI	GCCNNNNNGGC	1 cut(s)	288
BisI	GCNGC	2 cut(s)	31, 289
BlsI	GCNGC	2 cut(s)	32, 290
Bme18I	GGWCC	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	344, 442
BmiI	GGNNCC	3 cut(s)	145, 443, 444
BpiI	GAAGAC	1 cut(s)	98
BsaAI	YACGTR	4 cut(s)	243, 263, 322, 697
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	657
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	2 cut(s)	34, 447
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	3 cut(s)	152, 597, 679
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseMI	GCAATG	2 cut(s)	34, 447
BseMII	CTCAG	2 cut(s)	56, 449
BseNI	ACTGG	1 cut(s)	270
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	3 cut(s)	282, 346, 656
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	3 cut(s)	258, 455, 622
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	3 cut(s)	258, 455, 622
BsmI	GAATGC	2 cut(s)	463, 692
BsnI	GGCC	3 cut(s)	282, 346, 656
Bso31I	GGTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	4 cut(s)	124, 188, 349, 544
Bsp19I	CCATGG	1 cut(s)	657
BspACI	CCGC	5 cut(s)	31, 288, 393, 589, 639
BspANI	GGCC	3 cut(s)	282, 346, 656
BspCNI	CTCAG	2 cut(s)	55, 448
BspLI	GGNNCC	3 cut(s)	145, 443, 444
BspMI	ACCTGC	1 cut(s)	461
BspPI	GGATC	1 cut(s)	552
BspTNI	GGTCTC	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	34, 447
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	4 cut(s)	124, 188, 349, 544
BssNAI	GTATAC	1 cut(s)	694
BssT1I	CCWWGG	1 cut(s)	657
Bst1107I	GTATAC	1 cut(s)	694
Bst4CI	ACNGT	1 cut(s)	104
BstBAI	YACGTR	4 cut(s)	243, 263, 322, 697
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	42, 435
BstDSI	CCRYGG	1 cut(s)	657
BstF5I	GGATG	3 cut(s)	152, 597, 679
BstHHI	GCGC	2 cut(s)	41, 248
BstKTI	GATC	4 cut(s)	127, 191, 352, 547
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	4 cut(s)	124, 188, 349, 544
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 288, 390, 458, 467
BstNSI	RCATGY	2 cut(s)	525, 628
BstV2I	GAAGAC	1 cut(s)	98
BstZ17I	GTATAC	1 cut(s)	694
BsuRI	GGCC	3 cut(s)	282, 346, 656
BtgI	CCRYGG	1 cut(s)	657
BtgZI	GCGATG	1 cut(s)	476
BtsCI	GGATG	3 cut(s)	152, 597, 679
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	1 cut(s)	382
CfoI	GCGC	2 cut(s)	41, 248
Cfr13I	GGNCC	2 cut(s)	344, 442
CviAII	CATG	7 cut(s)	122, 522, 532, 563, 625, 646, 658
CviJI	RGCY	7 cut(s)	144, 253, 282, 291, 346, 418, 656
CviKI_1	RGCY	7 cut(s)	144, 253, 282, 291, 346, 418, 656
DdeI	CTNAG	2 cut(s)	42, 435
DpnI	GATC	4 cut(s)	126, 190, 351, 546
DpnII	GATC	4 cut(s)	124, 188, 349, 544
DraIII	CACNNNGTG	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	657
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	442
Eco72I	CACGTG	2 cut(s)	243, 263
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	657
EcoT22I	ATGCAT	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	7 cut(s)	125, 525, 535, 566, 628, 649, 661
FaqI	GGGAC	3 cut(s)	258, 455, 622
FatI	CATG	7 cut(s)	121, 521, 531, 562, 624, 645, 657
FauI	CCCGC	1 cut(s)	632
FbaI	TGATCA	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	2 cut(s)	31, 289
FokI	GGATG	3 cut(s)	139, 604, 686
Fsp4HI	GCNGC	2 cut(s)	31, 289
FspAI	RTGCGCAY	1 cut(s)	247
FspI	TGCGCA	1 cut(s)	247
GlaI	GCGC	2 cut(s)	40, 247
GluI	GCNGC	2 cut(s)	31, 289
HaeIII	GGCC	3 cut(s)	282, 346, 656
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	2 cut(s)	41, 248
Hin1II	CATG	7 cut(s)	125, 525, 535, 566, 628, 649, 661
Hin6I	GCGC	2 cut(s)	39, 246
HinP1I	GCGC	2 cut(s)	39, 246
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	4 cut(s)	198, 385, 407, 499
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	4 cut(s)	45, 129, 188, 438
Hpy8I	GTNNAC	1 cut(s)	694
HpyAV	CCTTC	2 cut(s)	122, 232
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	5 cut(s)	242, 262, 321, 602, 696
HpyCH4V	TGCA	4 cut(s)	410, 470, 566, 614
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 288, 390, 458, 467
HpyF3I	CTNAG	2 cut(s)	42, 435
HpySE526I	ACGT	5 cut(s)	242, 262, 321, 602, 696
Hsp92II	CATG	7 cut(s)	125, 525, 535, 566, 628, 649, 661
HspAI	GCGC	2 cut(s)	39, 246
KflI	GGGWCCC	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	124, 188, 349, 544
LmnI	GCTCC	3 cut(s)	149, 415, 536
LpnPI	CCDG	6 cut(s)	105, 283, 292, 338, 360, 456
MaeII	ACGT	5 cut(s)	242, 262, 321, 602, 696
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	4 cut(s)	126, 190, 351, 546
MboI	GATC	4 cut(s)	124, 188, 349, 544
MboII	GAAGA	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	2 cut(s)	56, 180
MnlI	CCTC	9 cut(s)	28, 90, 286, 432, 444, 477, 487, 570, 655
Mph1103I	ATGCAT	1 cut(s)	568
MslI	CAYNNNNRTG	3 cut(s)	623, 629, 662
MspI	CCGG	1 cut(s)	279
Mva1269I	GAATGC	2 cut(s)	463, 692
MwoI	GCNNNNNNNGC	5 cut(s)	36, 288, 390, 458, 467
NcoI	CCATGG	1 cut(s)	657
NdeII	GATC	4 cut(s)	124, 188, 349, 544
NlaIII	CATG	7 cut(s)	125, 525, 535, 566, 628, 649, 661
NlaIV	GGNNCC	3 cut(s)	145, 443, 444
NmuCI	GTSAC	1 cut(s)	194
NsbI	TGCGCA	1 cut(s)	247
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	2 cut(s)	525, 628
PciI	ACATGT	1 cut(s)	624
PctI	GAATGC	2 cut(s)	463, 692
PflMI	CCANNNNNTGG	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	32, 290
PmaCI	CACGTG	2 cut(s)	243, 263
PmlI	CACGTG	2 cut(s)	243, 263
Ppu21I	YACGTR	4 cut(s)	243, 263, 322, 697
PpuMI	RGGWCCY	1 cut(s)	442
PscI	ACATGT	1 cut(s)	624
Psp5II	RGGWCCY	1 cut(s)	442
PspCI	CACGTG	2 cut(s)	243, 263
PspN4I	GGNNCC	3 cut(s)	145, 443, 444
PspPI	GGNCC	2 cut(s)	344, 442
PspPPI	RGGWCCY	1 cut(s)	442
RseI	CAYNNNNRTG	3 cut(s)	623, 629, 662
SatI	GCNGC	2 cut(s)	31, 289
Sau3AI	GATC	4 cut(s)	124, 188, 349, 544
Sau96I	GGNCC	2 cut(s)	344, 442
SduI	GDGCHC	1 cut(s)	562
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	3 cut(s)	623, 629, 662
Sse9I	AATT	2 cut(s)	56, 180
SsiI	CCGC	5 cut(s)	31, 288, 393, 589, 639
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	5 cut(s)	245, 265, 324, 605, 699
TaqI	TCGA	2 cut(s)	82, 621
TaqII	GACCGA	1 cut(s)	499
TasI	AATT	2 cut(s)	56, 180
TauI	GCSGC	2 cut(s)	33, 291
TseFI	GTSAC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	441, 662, 690
Van91I	CCANNNNNTGG	1 cut(s)	453
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	1 cut(s)	180
XceI	RCATGY	2 cut(s)	525, 628
XmiI	GTMKAC	1 cut(s)	693
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.