Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006138

Physical Location & Seq

Genomic Coordinates Reverse (-)

5566100 .. 5566699

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1079200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCGGGTGCATTGGGGGGCTTTGCTTAACGCTAGTAGGATTTACAAGAATATGGAAATAGCTGAGCTTGCGTCAAGAAAGATAGTAGAACCAGAGGCCAAGAATCATGGTGCTTATGTGCTTTTGTCCAACATATATGCCGATTCCAAGCTTTGGGACGGAGTTAGTAACGTGCGGCTGACTATGAAGGCAAAAGGTGTGAGGAAGCTTCCCGGTTGCAGTGTCCTAGAGGTTGATGGTCGTAGGAGACAATTGGCGGGTTATGTGGCTAATGCAAATCCTGTGCTATTCGACATGGAAGAAGAAGGGAAAGAGGATTCGTTGTGTAAACATAGCGAGAAGGTTGCGATTGCTTTCAGATTGATCACTTTGAAAGAAGGCGTGCCGATTAGGATTGTGAAGAACCTCAGGGTCTGTTGGGATTGCCATGATGTAACCAAAATGATATCTAACCTTTTTAGCAGAGAGATTATTGTGAGAGATTGGAATAGGTTTCACCATTTTAAAGATGGTGAGTGTTCTTGCAAGGGTTACCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

180

Amino Acids

20.5

Weight (kDa)

9.26

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	15 - 77	5.1e-20	E motif
DYW_deaminase	PF14432	87 - 178	1.6e-37	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40405 AT5G40405
fragaria_vesca	FvH4_4g32050
malus_domestica	MD13G1079400.v1.1 MD16G1079200.v1.1 MD16G1079300.v1.1
prunus_persica	Prupe.1G267400_v2.0.a1
pyrus_communis	pycom13g06910 pycom16g06850
rosa_chinensis	RchiOBHm_Chr1g0381771 RchiOBHm_Chr4g0440691 RchiOBHm_Chr4g0440711
rosa_laevigata	RLG00000006158 RLG00000008805 RLG00000026207
rosa_multiflora	Rmu_sc0000463.1_g000002 Rmu_sc0008418.1_g000010
rosa_roxburghii	Rroxscaffold_5G00381500 Rroxscaffold_7G00185760
rosa_rugosa	Rorug01G0430800 Rorug04G0327600
rosa_samantha	Rh1BG411600 Rh4AG379300 Rh4BG131000 Rh4BG392100
rosa_wichuraiana	Rw1G039640 Rw4G011000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	153
AciI	CCGC	3 cut(s)	4, 175, 257
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgeI	ACCGGT	1 cut(s)	534
AgsI	TTSAA	1 cut(s)	373
AluBI	AGCT	4 cut(s)	62, 67, 151, 208
AluI	AGCT	4 cut(s)	62, 67, 151, 208
Alw26I	GTCTC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	414
AoxI	GGCC	1 cut(s)	96
AsiGI	ACCGGT	1 cut(s)	534
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	488, 524
AxyI	CCTNAGG	1 cut(s)	407
BccI	CCATC	2 cut(s)	230, 503
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BclI	TGATCA	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	2 cut(s)	33, 227
BisI	GCNGC	1 cut(s)	176
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	177
Bme1390I	CCNGG	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	534
Bse21I	CCTNAGG	1 cut(s)	407
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	54, 421
BshFI	GGCC	1 cut(s)	98
BshTI	ACCGGT	1 cut(s)	534
BsiSI	CCGG	2 cut(s)	213, 535
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	363
Bsp1720I	GCTNAGC	1 cut(s)	63
BspACI	CCGC	3 cut(s)	4, 175, 257
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	55, 420
BsrFI	RCCGGY	1 cut(s)	534
BssAI	RCCGGY	1 cut(s)	534
BssMI	GATC	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	69, 383
BstDEI	CTNAG	2 cut(s)	63, 407
BstEII	GGTNACC	1 cut(s)	530
BstKTI	GATC	1 cut(s)	366
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstPI	GGTNACC	1 cut(s)	530
BstSCI	CCNGG	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	69, 383
CaiI	CAGNNNCTG	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	534
CseI	GACGC	1 cut(s)	60
CspAI	ACCGGT	1 cut(s)	534
CviAII	CATG	3 cut(s)	107, 295, 428
CviJI	RGCY	8 cut(s)	20, 62, 67, 98, 151, 178, 208, 269
CviKI_1	RGCY	8 cut(s)	20, 62, 67, 98, 151, 178, 208, 269
DdeI	CTNAG	2 cut(s)	63, 407
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
DraI	TTTAAA	1 cut(s)	505
Eco32I	GATATC	1 cut(s)	447
Eco81I	CCTNAGG	1 cut(s)	407
Eco91I	GGTNACC	1 cut(s)	530
EcoO65I	GGTNACC	1 cut(s)	530
EcoRV	GATATC	1 cut(s)	447
FaeI	CATG	3 cut(s)	110, 298, 431
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	106, 294, 427
FauI	CCCGC	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	2 cut(s)	33, 227
GluI	GCNGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	213, 535
HgaI	GACGC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	110, 298, 431
HindIII	AAGCTT	2 cut(s)	149, 206
HinfI	GANTC	3 cut(s)	103, 143, 317
HpaII	CCGG	2 cut(s)	213, 535
HphI	GGTGA	2 cut(s)	488, 524
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	1 cut(s)	75
Hpy8I	GTNNAC	1 cut(s)	329
HpyAV	CCTTC	4 cut(s)	181, 299, 334, 371
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	4 cut(s)	10, 219, 275, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	63, 407
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	110, 298, 431
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	1 cut(s)	363
LpnPI	CCDG	4 cut(s)	105, 226, 294, 394
MaeI	CTAG	2 cut(s)	33, 227
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	3 cut(s)	167, 433, 530
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	3 cut(s)	311, 314, 412
MfeI	CAATTG	1 cut(s)	251
MluCI	AATT	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	5 cut(s)	88, 195, 223, 307, 416
MseI	TTAA	2 cut(s)	27, 504
MspI	CCGG	2 cut(s)	213, 535
MspR9I	CCNGG	1 cut(s)	213
MunI	CAATTG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	3 cut(s)	110, 298, 431
PfeI	GAWTC	3 cut(s)	103, 143, 317
PflMI	CCANNNNNTGG	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	534
PkrI	GCNGC	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	530
PstNI	CAGNNNCTG	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	27, 504
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	363
ScrFI	CCNGG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	3 cut(s)	4, 175, 257
SspMI	CTAG	2 cut(s)	33, 227
StyD4I	CCNGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	291
TasI	AATT	1 cut(s)	251
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	3 cut(s)	103, 143, 317
Tru1I	TTAA	2 cut(s)	27, 504
Tru9I	TTAA	2 cut(s)	27, 504
TscAI	CASTG	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XspI	CTAG	2 cut(s)	33, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.