Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006138

Physical Location & Seq

Genomic Coordinates Forward (+)

25835668 .. 25842719

Gene Structure 7052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGGTTAGAGTTTATAATCAGTTTCGAGGCAAGGCACAAGCCCAACTCCACATTATCATGATGAGCTCTTTGAGATGCATTGCAAAACACCCGACAATTGCACTAGTAGACTCATCCACCACTCTCAAAGATCTCAAGCAAATCCACACCCAACTCCTCATTAACGGTGTTCTCAACGATCCTCGTCTCTCCGGCAACTTTGTTGCCACCATTGCCGTACGGAACCCCAACAATTTGGAATATTCCAACCGAGTCCTGGATCAATGTGACAACCCATCTCTCTTCACCTTCAACTCCATGATCAGGGCCTATTCCAAAAGTTCCACACCTAGTAAAAGCTTTCACTTTTACAACAGAATCCTCCATTCAAGTAACAATCTTCTACCTGATAACTACACATTTAACTTCTTGGTTCGCACTTCTGCGCAGCATTCGTCATTTGAGACAGGTCCTTCGGTCCATGGTGCATTAATAAAGCATGGATTTGAGAATGACCCGCATGGTCAAAGTGCTTTAATATTTATGTATGCGGAATTGGGTTGTTTGGAGCAATGTCATAGAGTGTTTAGCGGCATTGCCGATCCTGATTTGGTGTGTCAGACTGCTATTGTGAGCGCTTGTGCTAAATGTGGGGATGTAGATTATGCACGGTTATTGTTCGATGAAATGCCTGAAAGAGACCCCATTGCTTGGAATGCGATGATTGCGGGGTATGCACAATGTGGGAAGTCTAGGGAAGCTTTGGGTTTGTTCCATTTGATGCAAATGGAGGGTGTGAGGGTGAATGAGGTGTGTATGGTTTCGGTGTTATCGGCGTGTTGTCACTTGGGGGCACTAGATCAAGGGAGATGGGCTCATGCATATATAGAGAGAAACAAGGTGAGGATGACAGTGACATTGGGGACTGCATTGCTTGACATGTATGCGAAATGTGGGAATATGAGTAAGGCCATGGAAGTGTTTTGGGGGATGAAGGAAAAGAATGTGTATACGTGGAGTGTTGCTTTGGGGGGACTAGCTATGAATGGCTTTGGTGAGAAGTGTCTTGAGCTTTTCTCAGTCATGGAGAAAGAAGGCGTTCGACCAAATGAAGTTACCTTTGTTTCGGTTCTTAGGGGTTGTACTGTGGTTGGACTAGTGGAGGAAGGTCGTAGATATTTTGACTCGATGAAAGAATTGTATGGGATTGAACCTCAGCTAGAGCATTATGGTTGCATTGTTGACTTATATGGTCGAGCTGGGCGTTTAGATGAAGCTCTGAACTTCATTAACAACATGCCAATGAAGCCTCATGCGGGTGCTTGGGGGGCTTTGCTCCACGCTAGTAGAATGTATCGGAATATGGAACTGGGTGAGCTTGCGTCGAGAAAAATAGTAGAACTCGAGGACAGGAATCACGGTGCTTATGTGCTTTTGTCCAATATATATGCGGATTCCAAGCTTTATGATGGAGTAAGTAACGTGCGGCAAAATATGAAGGCTAAAGGTGTGATGAAGCTTCCTGGTTGTAGTGTCATAGAAGTTGATGGGGAAGTTCATGAATGTATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

517

Amino Acids

57.77

Weight (kDa)

6.8

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	227 - 275	1.4e-09	PPR repeat family
PPR	PF01535	230 - 259	4.3e-08	PPR repeat
PPR_2	PF13041	327 - 374	1.1e-08	PPR repeat family
E_motif	PF20431	445 - 507	3.4e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40405 AT5G40405
fragaria_vesca	FvH4_4g32050
malus_domestica	MD13G1079400.v1.1 MD16G1079200.v1.1 MD16G1079300.v1.1
prunus_persica	Prupe.1G267400_v2.0.a1
pyrus_communis	pycom13g06910 pycom16g06850
rosa_chinensis	RchiOBHm_Chr1g0381771 RchiOBHm_Chr4g0440691 RchiOBHm_Chr4g0440711
rosa_laevigata	RLG00000006158 RLG00000008805 RLG00000026207
rosa_multiflora	Rmu_sc0000463.1_g000002 Rmu_sc0008418.1_g000010
rosa_roxburghii	Rroxscaffold_5G00381500 Rroxscaffold_7G00185760
rosa_rugosa	Rorug01G0430800 Rorug04G0327600
rosa_samantha	Rh1BG411600 Rh4AG379300 Rh4BG131000 Rh4BG392100
rosa_wichuraiana	Rw1G039640 Rw4G011000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
Acc16I	TGCGCA	1 cut(s)	426
AccB7I	CCANNNNNTGG	1 cut(s)	690
AccI	GTMKAC	2 cut(s)	108, 989
AciI	CCGC	7 cut(s)	497, 530, 570, 707, 1295, 1430, 1465
AclWI	GGATC	3 cut(s)	173, 267, 575
AdeI	CACNNNGTG	1 cut(s)	722
AfaI	GTAC	2 cut(s)	219, 1123
AfeI	AGCGCT	1 cut(s)	616
AfiI	CCNNNNNNNGG	4 cut(s)	256, 303, 690, 1295
AflIII	ACRYGT	1 cut(s)	918
AgsI	TTSAA	3 cut(s)	292, 369, 1190
AhlI	ACTAGT	2 cut(s)	103, 1135
AjnI	CCWGG	2 cut(s)	255, 1501
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	3 cut(s)	191, 437, 672
AlwI	GGATC	3 cut(s)	173, 267, 575
Ama87I	CYCGRG	1 cut(s)	1382
Aor51HI	AGCGCT	1 cut(s)	616
AoxI	GGCC	2 cut(s)	306, 948
ApeKI	GCWGC	1 cut(s)	427
ArsI	GACNNNNNNTTYG	2 cut(s)	436, 468
AseI	ATTAAT	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	1077
AspLEI	GCGC	2 cut(s)	427, 617
AspS9I	GGNCC	3 cut(s)	306, 449, 457
AsuHPI	GGTGA	5 cut(s)	277, 793, 892, 1046, 1364
AvaI	CYCGRG	1 cut(s)	1382
AvaII	GGWCC	2 cut(s)	449, 457
BaeGI	GKGCMC	1 cut(s)	835
BanII	GRGCYC	2 cut(s)	68, 856
Bbv12I	GWGCWC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	1194
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	4 cut(s)	283, 843, 1442, 1520
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	257, 1503
BclI	TGATCA	1 cut(s)	300
BcoDI	GTCTC	3 cut(s)	191, 437, 672
BcuI	ACTAGT	2 cut(s)	103, 1135
BfaI	CTAG	9 cut(s)	104, 330, 732, 836, 1016, 1136, 1199, 1323, 1552
BfoI	RGCGCY	1 cut(s)	618
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	3 cut(s)	428, 571, 1466
BlsI	GCNGC	3 cut(s)	429, 572, 1467
Bme1390I	CCNGG	2 cut(s)	257, 1503
Bme18I	GGWCC	2 cut(s)	449, 457
BmeT110I	CYCGRG	1 cut(s)	1382
BmgT120I	GGNCC	3 cut(s)	306, 449, 457
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	2 cut(s)	257, 1503
BmrI	ACTGGG	1 cut(s)	1358
BmsI	GCATC	2 cut(s)	65, 750
BmuI	ACTGGG	1 cut(s)	1358
BplI	GAGNNNNNCTC	4 cut(s)	838, 870, 1040, 1072
Bpu10I	CCTNAGC	1 cut(s)	1194
BpuEI	CTTGAG	2 cut(s)	119, 1067
BsaAI	YACGTR	1 cut(s)	993
BsaI	GGTCTC	1 cut(s)	672
BsaJI	CCNNGG	2 cut(s)	460, 951
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 303, 690, 1295
Bse1I	ACTGG	1 cut(s)	1353
Bse3DI	GCAATG	6 cut(s)	78, 210, 557, 573, 684, 908
BseBI	CCWGG	2 cut(s)	257, 1503
BseDI	CCNNGG	2 cut(s)	460, 951
BseGI	GGATG	4 cut(s)	113, 640, 891, 975
BseLI	CCNNNNNNNGG	4 cut(s)	256, 303, 690, 1295
BseMI	GCAATG	6 cut(s)	78, 210, 557, 573, 684, 908
BseMII	CTCAG	2 cut(s)	1071, 1208
BseNI	ACTGG	1 cut(s)	1353
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	835
BseXI	GCAGC	1 cut(s)	439
BseYI	CCCAGC	1 cut(s)	1238
BshFI	GGCC	2 cut(s)	308, 950
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	1382
BsiSI	CCGG	1 cut(s)	192
BsiWI	CGTACG	1 cut(s)	217
BslFI	GGGAC	2 cut(s)	916, 1026
BslI	CCNNNNNNNGG	4 cut(s)	256, 303, 690, 1295
BsmAI	GTCTC	3 cut(s)	191, 437, 672
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	2 cut(s)	916, 1026
BsmI	GAATGC	2 cut(s)	430, 700
BsnI	GGCC	2 cut(s)	308, 950
Bso31I	GGTCTC	1 cut(s)	672
BsoBI	CYCGRG	1 cut(s)	1382
Bsp1286I	GDGCHC	3 cut(s)	68, 835, 856
Bsp143I	GATC	6 cut(s)	130, 178, 259, 300, 580, 838
Bsp19I	CCATGG	2 cut(s)	460, 951
BspACI	CCGC	7 cut(s)	497, 530, 570, 707, 1295, 1430, 1465
BspANI	GGCC	2 cut(s)	308, 950
BspCNI	CTCAG	2 cut(s)	1070, 1207
BspHI	TCATGA	2 cut(s)	57, 1537
BspLI	GGNNCC	1 cut(s)	224
BspPI	GGATC	3 cut(s)	173, 267, 575
BspTNI	GGTCTC	1 cut(s)	672
BsrDI	GCAATG	6 cut(s)	78, 210, 557, 573, 684, 908
BsrI	ACTGG	1 cut(s)	1353
BssECI	CCNNGG	2 cut(s)	460, 951
BssMI	GATC	6 cut(s)	130, 178, 259, 300, 580, 838
BssNAI	GTATAC	1 cut(s)	990
BssT1I	CCWWGG	2 cut(s)	460, 951
Bst1107I	GTATAC	1 cut(s)	990
Bst2UI	CCWGG	2 cut(s)	257, 1503
Bst4CI	ACNGT	5 cut(s)	167, 651, 892, 1126, 1400
Bst6I	CTCTTC	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	993
BstC8I	GCNNGC	1 cut(s)	1359
BstDEI	CTNAG	3 cut(s)	1057, 1112, 1194
BstDSI	CCRYGG	2 cut(s)	460, 951
BstF5I	GGATG	4 cut(s)	113, 640, 891, 975
BstH2I	RGCGCY	1 cut(s)	618
BstHHI	GCGC	2 cut(s)	427, 617
BstKTI	GATC	6 cut(s)	133, 181, 262, 303, 583, 841
BstMAI	GTCTC	3 cut(s)	191, 437, 672
BstMBI	GATC	6 cut(s)	130, 178, 259, 300, 580, 838
BstMWI	GCNNNNNNNGC	6 cut(s)	212, 695, 704, 713, 1285, 1307
BstNI	CCWGG	2 cut(s)	257, 1503
BstNSI	RCATGY	2 cut(s)	922, 1279
BstSCI	CCNGG	2 cut(s)	255, 1501
BstSLI	GKGCMC	1 cut(s)	835
BstV1I	GCAGC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	130
BstZ17I	GTATAC	1 cut(s)	990
BsuRI	GGCC	2 cut(s)	308, 950
BtgI	CCRYGG	2 cut(s)	460, 951
BtgZI	GCGATG	1 cut(s)	713
BtsCI	GGATG	4 cut(s)	113, 640, 891, 975
BtsIMutI	CAGTG	1 cut(s)	897
Cac8I	GCNNGC	1 cut(s)	1359
CciI	TCATGA	2 cut(s)	57, 1537
CfoI	GCGC	2 cut(s)	427, 617
Cfr13I	GGNCC	3 cut(s)	306, 449, 457
CseI	GACGC	1 cut(s)	1350
Csp6I	GTAC	2 cut(s)	218, 1122
CviQI	GTAC	2 cut(s)	218, 1122
DdeI	CTNAG	3 cut(s)	1057, 1112, 1194
DpnI	GATC	6 cut(s)	132, 180, 261, 302, 582, 840
DpnII	GATC	6 cut(s)	130, 178, 259, 300, 580, 838
DraIII	CACNNNGTG	1 cut(s)	722
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	460, 951
Eco24I	GRGCYC	2 cut(s)	68, 856
Eco31I	GGTCTC	1 cut(s)	672
Eco47I	GGWCC	2 cut(s)	449, 457
Eco47III	AGCGCT	1 cut(s)	616
Eco53kI	GAGCTC	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	1382
EcoICRI	GAGCTC	1 cut(s)	66
EcoO109I	RGGNCCY	2 cut(s)	306, 449
EcoRII	CCWGG	2 cut(s)	255, 1501
EcoT14I	CCWWGG	2 cut(s)	460, 951
EcoT22I	ATGCAT	2 cut(s)	80, 862
EcoT38I	GRGCYC	2 cut(s)	68, 856
ErhI	CCWWGG	2 cut(s)	460, 951
Esp3I	CGTCTC	1 cut(s)	191
FaqI	GGGAC	2 cut(s)	916, 1026
FauI	CCCGC	3 cut(s)	504, 700, 1288
FbaI	TGATCA	1 cut(s)	300
FblI	GTMKAC	2 cut(s)	108, 989
Fnu4HI	GCNGC	3 cut(s)	428, 571, 1466
FokI	GGATG	4 cut(s)	100, 647, 898, 982
FriOI	GRGCYC	2 cut(s)	68, 856
Fsp4HI	GCNGC	3 cut(s)	428, 571, 1466
FspBI	CTAG	9 cut(s)	104, 330, 732, 836, 1016, 1136, 1199, 1323, 1552
FspI	TGCGCA	1 cut(s)	426
GlaI	GCGC	2 cut(s)	426, 616
GluI	GCNGC	3 cut(s)	428, 571, 1466
GsaI	CCCAGC	1 cut(s)	1242
HaeII	RGCGCY	1 cut(s)	618
HaeIII	GGCC	2 cut(s)	308, 950
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	1350
HhaI	GCGC	2 cut(s)	427, 617
Hin6I	GCGC	2 cut(s)	425, 615
HinP1I	GCGC	2 cut(s)	425, 615
HincII	GTYRAC	1 cut(s)	1222
HindII	GTYRAC	1 cut(s)	1222
HindIII	AAGCTT	4 cut(s)	337, 738, 1439, 1496
HinfI	GANTC	6 cut(s)	110, 252, 357, 1163, 1393, 1433
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	5 cut(s)	277, 793, 892, 1046, 1364
Hpy166II	GTNNAC	3 cut(s)	109, 990, 1222
Hpy188I	TCNGA	3 cut(s)	600, 1260, 1338
Hpy188III	TCNNGA	5 cut(s)	58, 584, 1046, 1365, 1538
Hpy8I	GTNNAC	3 cut(s)	109, 990, 1222
Hpy99I	CGWCG	1 cut(s)	1366
HpyAV	CCTTC	6 cut(s)	298, 462, 967, 1067, 1139, 1471
HpyCH4III	ACNGT	5 cut(s)	167, 651, 892, 1126, 1400
HpyCH4IV	ACGT	2 cut(s)	992, 1461
HpyF10VI	GCNNNNNNNGC	6 cut(s)	212, 695, 704, 713, 1285, 1307
HpyF3I	CTNAG	3 cut(s)	1057, 1112, 1194
HpySE526I	ACGT	2 cut(s)	992, 1461
HspAI	GCGC	2 cut(s)	425, 615
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	6 cut(s)	130, 178, 259, 300, 580, 838
LmnI	GCTCC	2 cut(s)	547, 1320
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	2 cut(s)	65, 750
MaeI	CTAG	9 cut(s)	104, 330, 732, 836, 1016, 1136, 1199, 1323, 1552
MaeII	ACGT	2 cut(s)	992, 1461
MaeIII	GTNAC	6 cut(s)	266, 371, 821, 892, 1093, 1457
MalI	GATC	6 cut(s)	132, 180, 261, 302, 582, 840
MboI	GATC	6 cut(s)	130, 178, 259, 300, 580, 838
MboII	GAAGA	2 cut(s)	274, 371
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	3 cut(s)	68, 835, 856
MluCI	AATT	4 cut(s)	96, 232, 533, 1175
MlyI	GAGTC	3 cut(s)	104, 261, 1157
MmeI	TCCRAC	2 cut(s)	270, 1111
Mph1103I	ATGCAT	2 cut(s)	80, 862
MroXI	GAANNNNTTC	1 cut(s)	1077
MseI	TTAA	5 cut(s)	162, 402, 470, 515, 1269
MslI	CAYNNNNRTG	4 cut(s)	56, 956, 1280, 1296
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	257, 1503
MunI	CAATTG	1 cut(s)	96
Mva1269I	GAATGC	2 cut(s)	430, 700
MvaI	CCWGG	2 cut(s)	257, 1503
MwoI	GCNNNNNNNGC	6 cut(s)	212, 695, 704, 713, 1285, 1307
NcoI	CCATGG	2 cut(s)	460, 951
NdeII	GATC	6 cut(s)	130, 178, 259, 300, 580, 838
NlaIV	GGNNCC	1 cut(s)	224
NmuCI	GTSAC	3 cut(s)	266, 821, 892
NsbI	TGCGCA	1 cut(s)	426
NsiI	ATGCAT	2 cut(s)	80, 862
NspI	RCATGY	2 cut(s)	922, 1279
PaeR7I	CTCGAG	1 cut(s)	1382
PagI	TCATGA	2 cut(s)	57, 1537
PciI	ACATGT	1 cut(s)	918
PcsI	WCGNNNNNNNCGW	1 cut(s)	1240
PctI	GAATGC	2 cut(s)	430, 700
PdmI	GAANNNNTTC	1 cut(s)	1077
PfeI	GAWTC	3 cut(s)	357, 1393, 1433
Pfl23II	CGTACG	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	690
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	3 cut(s)	429, 572, 1467
PleI	GAGTC	3 cut(s)	104, 260, 1157
PpsI	GAGTC	3 cut(s)	104, 260, 1157
Ppu21I	YACGTR	1 cut(s)	993
PpuMI	RGGWCCY	1 cut(s)	449
PscI	ACATGT	1 cut(s)	918
PshBI	ATTAAT	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	68
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	2 cut(s)	255, 1501
PspFI	CCCAGC	1 cut(s)	1238
PspGI	CCWGG	2 cut(s)	255, 1501
PspLI	CGTACG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	3 cut(s)	306, 449, 457
PspPPI	RGGWCCY	1 cut(s)	449
PspXI	VCTCGAGB	1 cut(s)	1382
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	2 cut(s)	219, 1123
RsaNI	GTAC	2 cut(s)	218, 1122
RseI	CAYNNNNRTG	4 cut(s)	56, 956, 1280, 1296
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	5 cut(s)	162, 402, 470, 515, 1269
SatI	GCNGC	3 cut(s)	428, 571, 1466
Sau3AI	GATC	6 cut(s)	130, 178, 259, 300, 580, 838
Sau96I	GGNCC	3 cut(s)	306, 449, 457
SchI	GAGTC	3 cut(s)	104, 261, 1157
ScrFI	CCNGG	2 cut(s)	257, 1503
SduI	GDGCHC	3 cut(s)	68, 835, 856
SfaNI	GCATC	2 cut(s)	65, 750
Sfr274I	CTCGAG	1 cut(s)	1382
SinI	GGWCC	2 cut(s)	449, 457
SlaI	CTCGAG	1 cut(s)	1382
SmiMI	CAYNNNNRTG	4 cut(s)	56, 956, 1280, 1296
SmlI	CTYRAG	3 cut(s)	134, 1046, 1382
SmoI	CTYRAG	3 cut(s)	134, 1046, 1382
SpeI	ACTAGT	2 cut(s)	103, 1135
Sse9I	AATT	4 cut(s)	96, 232, 533, 1175
SsiI	CCGC	7 cut(s)	497, 530, 570, 707, 1295, 1430, 1465
SspI	AATATT	2 cut(s)	242, 519
SspMI	CTAG	9 cut(s)	104, 330, 732, 836, 1016, 1136, 1199, 1323, 1552
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	255, 1501
StyI	CCWWGG	2 cut(s)	460, 951
TaaI	ACNGT	5 cut(s)	167, 651, 892, 1126, 1400
TaiI	ACGT	2 cut(s)	995, 1464
TaqI	TCGA	7 cut(s)	25, 660, 1081, 1166, 1234, 1364, 1383
TaqII	GACCGA	1 cut(s)	445
TasI	AATT	4 cut(s)	96, 232, 533, 1175
TatI	WGTACW	1 cut(s)	1121
TauI	GCSGC	2 cut(s)	573, 1468
TfiI	GAWTC	3 cut(s)	357, 1393, 1433
Tru1I	TTAA	5 cut(s)	162, 402, 470, 515, 1269
Tru9I	TTAA	5 cut(s)	162, 402, 470, 515, 1269
TscAI	CASTG	1 cut(s)	897
TseFI	GTSAC	3 cut(s)	266, 821, 892
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	3 cut(s)	266, 821, 892
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	897
Van91I	CCANNNNNTGG	1 cut(s)	690
VpaK11BI	GGWCC	2 cut(s)	449, 457
VspI	ATTAAT	1 cut(s)	470
XceI	RCATGY	2 cut(s)	922, 1279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XhoI	CTCGAG	1 cut(s)	1382
XmiI	GTMKAC	2 cut(s)	108, 989
XmnI	GAANNNNTTC	1 cut(s)	1077
XspI	CTAG	9 cut(s)	104, 330, 732, 836, 1016, 1136, 1199, 1323, 1552
Zsp2I	ATGCAT	2 cut(s)	80, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.