Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013900

Physical Location & Seq

Genomic Coordinates Reverse (-)

31551561 .. 31553883

Gene Structure 2323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1224300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGTGGCGTTGAGGAGAAGAACGCAAGCCCCGAAGCCTCCCTCTCCTGCTCAAATCGTCGAGGATGATGACTACGTCAGCGCATCCGATTCCGAATCCGACGAGGACGTGTCCTGCGAGGAATGTGGGTCCGGCGACTCTCCGGCGGAGCTCCTTCTGTGCGACGGTCGCAGCTGCAACAGAGGCTACCACATGTTTTGCCTGAGACCCATCCTTGCTCAAGTCCCGAAAGGAAAGTGGTTCGGCCCTTGCTGCTCCAACGACAAAAAACCCAAATCTTTCCCTCTCCACCAAACTAAAATCAGCGATTTTTTTCGGATTCAGAGGTTTGCAGAATCGCCCCAGAAGATAAATCAAGATTGTCGAAAGAGGCGAAGGCGGGCGAGCAGCTTGGTGGTCTCGAAGAAGAAGAGGAAATTGTTGCCCTTTATTCCGACCAAGGATTGTACGAGGAGAATGCAGCAAATGGCTTCGCTGGCGACGGCGTTGATGGCAACGGGGACTGAGTTCAGCAATGAGCTCACTTATATCCCTGGAATGGCGCCCAGGTGGGCCAATTGTGCAGATCTTGAGCGAGAAGGAATGCAGGTTATGTCGAAAGAAGATACTGAAACGTTGAATTTGTGCAAAAGCATGATGGAGAGAGGAGAATGTCCTCCCCTCATGGTTGTTTTCGATCCTAAAGAAGGGTTCACAGTTGAGGCTGATAAACACATAAGGGATTTGACAATAATCACAGAATACGTTGGAGATGTTGATTATCTGAAGAACCGCGAAAATGACGATGGAGACAGCACAATGACATTGCTTTCAGCAGCTACACCTTCAAAAAGCCTTGTCATTTGTCCCTACAAGCATGGTAACATTGCGCGCTTCATCAACGGAATCAATAATCATACACCGGACGGGAGGAAGAAGCAGAACTTGAAGTGTGTAAGATTTGACGTCAATGGCGAGTCTAGGGTTTTACTGATTGCGAATCGAGATATAACAAAGGGGGAGAGATTGTATTATGATTACAATGGATATGAGAATGAATACCCAACCGAGCATTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046976 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

354

Amino Acids

40.08

Weight (kDa)

7.86

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	39 - 85	7.7e-07	PHD-finger
SET	PF00856	230 - 341	9.7e-09	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24330
fragaria_vesca	FvH4_7g32150
malus_domestica	MD01G1224300.v1.1
prunus_persica	Prupe.2G314600_v2.0.a1
pyrus_communis	pycom01g23310
rosa_chinensis	RchiOBHm_Chr1g0381761
rosa_laevigata	RLG00000026210
rosa_multiflora	Rmu_sc0008418.1_g000011 Rmu_sc0035117.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278470 Rroxscaffold_7G00185810
rosa_rugosa	Rorug01G0430800
rosa_samantha	Rh1AG454100 Rh1BG411500 Rh1CG425700 Rh1DG443300
rosa_wichuraiana	Rw1G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	948
Acc36I	ACCTGC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	541
AccII	CGCG	2 cut(s)	774, 871
AciI	CCGC	3 cut(s)	146, 379, 772
AclI	AACGTT	1 cut(s)	614
AclWI	GGATC	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	619
AcuI	CTGAAG	1 cut(s)	785
AcyI	GRCGYC	2 cut(s)	542, 945
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	2 cut(s)	538, 686
AflIII	ACRYGT	2 cut(s)	108, 192
AgsI	TTSAA	3 cut(s)	619, 828, 928
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	532, 545
AluBI	AGCT	5 cut(s)	151, 174, 390, 520, 818
AluI	AGCT	5 cut(s)	151, 174, 390, 520, 818
Alw21I	GWGCWC	2 cut(s)	153, 522
Alw26I	GTCTC	3 cut(s)	199, 403, 783
AlwI	GGATC	1 cut(s)	671
AoxI	GGCC	2 cut(s)	244, 552
ApeKI	GCWGC	6 cut(s)	171, 174, 252, 387, 460, 815
ApoI	RAATTY	1 cut(s)	619
AspLEI	GCGC	4 cut(s)	83, 544, 871, 873
AspS9I	GGNCC	3 cut(s)	129, 245, 552
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	541
BanII	GRGCYC	2 cut(s)	153, 522
Bbv12I	GWGCWC	2 cut(s)	153, 522
BbvI	GCAGC	6 cut(s)	161, 183, 239, 399, 472, 827
BccI	CCATC	4 cut(s)	218, 484, 631, 779
BceAI	ACGGC	1 cut(s)	498
BcgI	CGANNNNNNTGC	2 cut(s)	439, 473
BciT130I	CCWGG	2 cut(s)	534, 547
BcoDI	GTCTC	3 cut(s)	199, 403, 783
BfaI	CTAG	1 cut(s)	960
BfoI	RGCGCY	1 cut(s)	545
BfuAI	ACCTGC	1 cut(s)	577
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	6 cut(s)	172, 175, 253, 388, 461, 816
BlsI	GCNGC	6 cut(s)	173, 176, 254, 389, 462, 817
Bme1390I	CCNGG	2 cut(s)	534, 547
Bme18I	GGWCC	1 cut(s)	129
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	3 cut(s)	129, 245, 552
BmiI	GGNNCC	2 cut(s)	130, 543
BmrFI	CCNGG	2 cut(s)	534, 547
BmsI	GCATC	1 cut(s)	92
BpuEI	CTTGAG	2 cut(s)	204, 590
BsaHI	GRCGYC	2 cut(s)	542, 945
BsaI	GGTCTC	2 cut(s)	199, 403
BsaJI	CCNNGG	3 cut(s)	438, 532, 545
BsaWI	WCCGGW	1 cut(s)	901
BsaXI	ACNNNNNCTCC	2 cut(s)	992, 1022
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 686
Bse3DI	GCAATG	3 cut(s)	520, 803, 864
BseBI	CCWGG	2 cut(s)	534, 547
BseDI	CCNNGG	3 cut(s)	438, 532, 545
BseGI	GGATG	3 cut(s)	70, 83, 210
BseLI	CCNNNNNNNGG	2 cut(s)	538, 686
BseMI	GCAATG	3 cut(s)	520, 803, 864
BseMII	CTCAG	2 cut(s)	194, 495
BsePI	GCGCGC	1 cut(s)	869
BseRI	GAGGAG	3 cut(s)	28, 466, 660
BseXI	GCAGC	6 cut(s)	161, 183, 239, 399, 472, 827
BsgI	GTGCAG	1 cut(s)	582
Bsh1236I	CGCG	2 cut(s)	774, 871
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	246, 554
BshNI	GGYRCC	1 cut(s)	541
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	153, 522
BsiSI	CCGG	3 cut(s)	132, 143, 902
BslFI	GGGAC	3 cut(s)	209, 514, 831
BslI	CCNNNNNNNGG	2 cut(s)	538, 686
BsmAI	GTCTC	3 cut(s)	199, 403, 783
BsmFI	GGGAC	3 cut(s)	209, 514, 831
BsmI	GAATGC	2 cut(s)	462, 588
BsnI	GGCC	2 cut(s)	246, 554
Bso31I	GGTCTC	2 cut(s)	199, 403
Bsp1286I	GDGCHC	2 cut(s)	153, 522
Bsp143I	GATC	2 cut(s)	565, 676
BspACI	CCGC	3 cut(s)	146, 379, 772
BspANI	GGCC	2 cut(s)	246, 554
BspCNI	CTCAG	2 cut(s)	195, 496
BspFNI	CGCG	2 cut(s)	774, 871
BspLI	GGNNCC	2 cut(s)	130, 543
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	1 cut(s)	671
BspT107I	GGYRCC	1 cut(s)	541
BspTNI	GGTCTC	2 cut(s)	199, 403
BsrDI	GCAATG	3 cut(s)	520, 803, 864
BssECI	CCNNGG	3 cut(s)	438, 532, 545
BssHII	GCGCGC	1 cut(s)	869
BssMI	GATC	2 cut(s)	565, 676
BssNI	GRCGYC	2 cut(s)	542, 945
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	534, 547
Bst4CI	ACNGT	2 cut(s)	167, 697
Bst6I	CTCTTC	1 cut(s)	404
BstACI	GRCGYC	2 cut(s)	542, 945
BstC8I	GCNNGC	5 cut(s)	27, 381, 385, 477, 871
BstDEI	CTNAG	2 cut(s)	203, 504
BstENI	CCTNNNNNAGG	1 cut(s)	684
BstF5I	GGATG	3 cut(s)	70, 83, 210
BstFNI	CGCG	2 cut(s)	774, 871
BstH2I	RGCGCY	1 cut(s)	545
BstHHI	GCGC	4 cut(s)	83, 544, 871, 873
BstKTI	GATC	2 cut(s)	568, 679
BstMAI	GTCTC	3 cut(s)	199, 403, 783
BstMBI	GATC	2 cut(s)	565, 676
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	6 cut(s)	168, 183, 252, 476, 491, 560
BstNI	CCWGG	2 cut(s)	534, 547
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	532, 545
BstUI	CGCG	2 cut(s)	774, 871
BstV1I	GCAGC	6 cut(s)	161, 183, 239, 399, 472, 827
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	246, 554
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	70, 83, 210
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	5 cut(s)	27, 381, 385, 477, 871
CfoI	GCGC	4 cut(s)	83, 544, 871, 873
Cfr13I	GGNCC	3 cut(s)	129, 245, 552
Csp6I	GTAC	1 cut(s)	447
CspCI	CAANNNNNGTGG	2 cut(s)	179, 214
CviAII	CATG	4 cut(s)	193, 634, 664, 857
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	2 cut(s)	203, 504
DinI	GGCGCC	1 cut(s)	543
DpnI	GATC	2 cut(s)	567, 678
DpnII	GATC	2 cut(s)	565, 676
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
EciI	GGCGGA	1 cut(s)	161
Ecl136II	GAGCTC	2 cut(s)	151, 520
Eco130I	CCWWGG	1 cut(s)	438
Eco24I	GRGCYC	2 cut(s)	153, 522
Eco31I	GGTCTC	2 cut(s)	199, 403
Eco47I	GGWCC	1 cut(s)	129
Eco53kI	GAGCTC	2 cut(s)	151, 520
Eco57I	CTGAAG	1 cut(s)	785
EcoICRI	GAGCTC	2 cut(s)	151, 520
EcoNI	CCTNNNNNAGG	1 cut(s)	684
EcoRII	CCWGG	2 cut(s)	532, 545
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	2 cut(s)	153, 522
EgeI	GGCGCC	1 cut(s)	543
EheI	GGCGCC	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	4 cut(s)	196, 637, 667, 860
FalI	AAGNNNNNCTT	2 cut(s)	908, 940
FaqI	GGGAC	3 cut(s)	209, 514, 831
FatI	CATG	4 cut(s)	192, 633, 663, 856
FauI	CCCGC	1 cut(s)	372
Fnu4HI	GCNGC	6 cut(s)	172, 175, 253, 388, 461, 816
FokI	GGATG	3 cut(s)	70, 77, 197
FriOI	GRGCYC	2 cut(s)	153, 522
Fsp4HI	GCNGC	6 cut(s)	172, 175, 253, 388, 461, 816
FspBI	CTAG	1 cut(s)	960
GlaI	GCGC	4 cut(s)	82, 543, 870, 872
GluI	GCNGC	6 cut(s)	172, 175, 253, 388, 461, 816
HaeII	RGCGCY	1 cut(s)	545
HaeIII	GGCC	2 cut(s)	246, 554
HapII	CCGG	3 cut(s)	132, 143, 902
HhaI	GCGC	4 cut(s)	83, 544, 871, 873
Hin1I	GRCGYC	2 cut(s)	542, 945
Hin1II	CATG	4 cut(s)	196, 637, 667, 860
Hin6I	GCGC	4 cut(s)	81, 542, 869, 871
HinP1I	GCGC	4 cut(s)	81, 542, 869, 871
HinfI	GANTC	8 cut(s)	89, 95, 137, 319, 335, 885, 956, 979
HpaII	CCGG	3 cut(s)	132, 143, 902
Hpy166II	GTNNAC	1 cut(s)	693
Hpy188I	TCNGA	7 cut(s)	88, 94, 100, 318, 324, 435, 765
Hpy188III	TCNNGA	5 cut(s)	226, 356, 400, 569, 983
Hpy8I	GTNNAC	1 cut(s)	693
Hpy99I	CGWCG	4 cut(s)	62, 104, 167, 484
HpyAV	CCTTC	5 cut(s)	164, 369, 572, 680, 834
HpyCH4III	ACNGT	2 cut(s)	167, 697
HpyCH4IV	ACGT	5 cut(s)	75, 108, 614, 744, 945
HpyCH4V	TGCA	6 cut(s)	177, 332, 460, 563, 586, 627
HpyF10VI	GCNNNNNNNGC	6 cut(s)	168, 183, 252, 476, 491, 560
HpyF3I	CTNAG	2 cut(s)	203, 504
HpySE526I	ACGT	5 cut(s)	75, 108, 614, 744, 945
Hsp92I	GRCGYC	2 cut(s)	542, 945
Hsp92II	CATG	4 cut(s)	196, 637, 667, 860
HspAI	GCGC	4 cut(s)	81, 542, 869, 871
KasI	GGCGCC	1 cut(s)	541
Kzo9I	GATC	2 cut(s)	565, 676
LmnI	GCTCC	3 cut(s)	148, 156, 260
Lsp1109I	GCAGC	6 cut(s)	161, 183, 239, 399, 472, 827
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	960
MaeII	ACGT	5 cut(s)	75, 108, 614, 744, 945
MaeIII	GTNAC	1 cut(s)	860
MalI	GATC	2 cut(s)	567, 678
MboI	GATC	2 cut(s)	565, 676
MboII	GAAGA	8 cut(s)	30, 358, 415, 418, 421, 614, 778, 925
MfeI	CAATTG	1 cut(s)	556
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	2 cut(s)	153, 522
MluCI	AATT	3 cut(s)	416, 556, 619
Mly113I	GGCGCC	1 cut(s)	542
MlyI	GAGTC	2 cut(s)	131, 965
MmeI	TCCRAC	4 cut(s)	123, 282, 458, 727
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	3 cut(s)	132, 143, 902
MspR9I	CCNGG	2 cut(s)	534, 547
MunI	CAATTG	1 cut(s)	556
Mva1269I	GAATGC	2 cut(s)	462, 588
MvaI	CCWGG	2 cut(s)	534, 547
MvnI	CGCG	2 cut(s)	774, 871
MwoI	GCNNNNNNNGC	6 cut(s)	168, 183, 252, 476, 491, 560
NarI	GGCGCC	1 cut(s)	542
NdeII	GATC	2 cut(s)	565, 676
NlaIII	CATG	4 cut(s)	196, 637, 667, 860
NlaIV	GGNNCC	2 cut(s)	130, 543
NspI	RCATGY	1 cut(s)	196
PauI	GCGCGC	1 cut(s)	869
PciI	ACATGT	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	4 cut(s)	29, 114, 370, 951
PctI	GAATGC	2 cut(s)	462, 588
PfeI	GAWTC	6 cut(s)	89, 95, 319, 335, 885, 979
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	6 cut(s)	173, 176, 254, 389, 462, 817
PleI	GAGTC	2 cut(s)	131, 964
PluTI	GGCGCC	1 cut(s)	545
PpsI	GAGTC	2 cut(s)	131, 964
PscI	ACATGT	1 cut(s)	192
Psp124BI	GAGCTC	2 cut(s)	153, 522
Psp1406I	AACGTT	1 cut(s)	614
Psp6I	CCWGG	2 cut(s)	532, 545
PspGI	CCWGG	2 cut(s)	532, 545
PspN4I	GGNNCC	2 cut(s)	130, 543
PspPI	GGNCC	3 cut(s)	129, 245, 552
PsuI	RGATCY	1 cut(s)	565
PsyI	GACNNNGTC	1 cut(s)	74
PteI	GCGCGC	1 cut(s)	869
PvuII	CAGCTG	1 cut(s)	174
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SacI	GAGCTC	2 cut(s)	153, 522
SatI	GCNGC	6 cut(s)	172, 175, 253, 388, 461, 816
Sau3AI	GATC	2 cut(s)	565, 676
Sau96I	GGNCC	3 cut(s)	129, 245, 552
SchI	GAGTC	2 cut(s)	131, 965
ScrFI	CCNGG	2 cut(s)	534, 547
SduI	GDGCHC	2 cut(s)	153, 522
SfaNI	GCATC	1 cut(s)	92
SfoI	GGCGCC	1 cut(s)	543
SinI	GGWCC	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	219, 569
SmoI	CTYRAG	2 cut(s)	219, 569
Sse9I	AATT	3 cut(s)	416, 556, 619
SsiI	CCGC	3 cut(s)	146, 379, 772
SspDI	GGCGCC	1 cut(s)	541
SspMI	CTAG	1 cut(s)	960
SstI	GAGCTC	2 cut(s)	153, 522
StyD4I	CCNGG	2 cut(s)	532, 545
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	2 cut(s)	167, 697
TaiI	ACGT	5 cut(s)	78, 111, 617, 747, 948
TaqI	TCGA	6 cut(s)	60, 364, 401, 596, 675, 982
TasI	AATT	3 cut(s)	416, 556, 619
TfiI	GAWTC	6 cut(s)	89, 95, 319, 335, 885, 979
TseI	GCWGC	6 cut(s)	171, 174, 252, 387, 460, 815
TspDTI	ATGAA	2 cut(s)	865, 1050
TspGWI	ACGGA	1 cut(s)	897
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	684
XapI	RAATTY	1 cut(s)	619
XceI	RCATGY	1 cut(s)	196
XspI	CTAG	1 cut(s)	960
ZraI	GACGTC	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.