Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013900

Physical Location & Seq

Genomic Coordinates Forward (+)

1452520 .. 1455315

Gene Structure 2796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCAATCGACAACAGCGGAACGGAATCTGAAAACGACGGCGTTTACTGCGAGGAATGTGGGTCTGGCCACTCGCCGGCGGAGCTTCTTCTCTGCGACGGCTGCGATAAAGGGTACCACCTGTTTTGCCTCAGACCCATCTTGGTTAATGTGCCCAAAGGCTCTTGGTTTGGGCCTTGTTGCTCCAAACAGAAGAAACCCAAGTCTTTCCCTCTCATCCAGACCAAAATCGTTGACTTCTTTCGGATTCAGAGAAACGCGGAAGTATCGGAGAAGATGAACCAAGATAATCGAAAGAGGCGAAAGAGAGCGAGTGGTTTGGTGATGTCCAAGAAGAGAAGGAGAATGTTGCCTTTTAGTCCCAGTGAAGACCCTGCAGTGAGATTGAAGCAAATGGCGTCCCTAGCAACAGCTTTGACGGCCACGGGAACTGAGTTTAGTAATAAGCTTACTTATAGGCCTGGGATGGCGCCGAGGGAGGCCAACTGTCCAGATTATGAACATGGAGGCATGCAGGTTTTGTCAAAAGAAGATTTTGAGACTTTAACTTTGTGCAAAAGCATGATGGAAAGAGGAGAATGTCCGCCCCTCATGGTTGTTTTTGATCCTCAGGAGGGGTTCACAGTTGAGGCTGATAAGCTTATAAAGGATTGGACAATAATCACAGAATACACTGGAGATGTTGATTACTTGAAGAACCGTGAAAATGATGGTGGGGATAGCATTATGACATTACTTTCAGCTGCTGATCCTTCAAAAAGCCTTGTCATTTGTCCTGACAAGTATGGAAATATTGCCCGCTACATCAATGGCATCAACAATCACACACCGGAAGGGAGAAAGAAGCAGAACCTAAAATGTGTAAGATTTGATGTCAACGGCGAGTCTCGGGTATTACTGATTGCCAACAGGGATATACCAAAGGGAGAGAGATTGTATTATGATTACAATGCATATGAGAATGAATATCCTACTGAGCACTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046976 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

329

Amino Acids

37.2

Weight (kDa)

6.94

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	17 - 61	8.6e-08	PHD-finger
SET	PF00856	206 - 317	1.2e-08	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24330
fragaria_vesca	FvH4_7g32150
malus_domestica	MD01G1224300.v1.1
prunus_persica	Prupe.2G314600_v2.0.a1
pyrus_communis	pycom01g23310
rosa_chinensis	RchiOBHm_Chr1g0381761
rosa_laevigata	RLG00000026210
rosa_multiflora	Rmu_sc0008418.1_g000011 Rmu_sc0035117.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278470 Rroxscaffold_7G00185810
rosa_rugosa	Rorug01G0430800
rosa_samantha	Rh1AG454100 Rh1BG411500 Rh1CG425700 Rh1DG443300
rosa_wichuraiana	Rw1G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	505
Acc65I	GGTACC	1 cut(s)	114
AccB1I	GGYRCC	2 cut(s)	114, 469
AccII	CGCG	1 cut(s)	260
AciI	CCGC	5 cut(s)	18, 80, 260, 584, 799
AclWI	GGATC	2 cut(s)	599, 743
AcoI	YGGCCR	2 cut(s)	67, 420
AcyI	GRCGYC	2 cut(s)	398, 470
AdeI	CACNNNGTG	1 cut(s)	985
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	76, 614
AgsI	TTSAA	3 cut(s)	388, 694, 756
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	5 cut(s)	85, 413, 448, 640, 743
AluI	AGCT	5 cut(s)	85, 413, 448, 640, 743
Alw21I	GWGCWC	1 cut(s)	981
Alw26I	GTCTC	2 cut(s)	533, 891
AlwI	GGATC	2 cut(s)	599, 743
AlwNI	CAGNNNCTG	1 cut(s)	746
Ama87I	CYCGRG	1 cut(s)	888
AoxI	GGCC	5 cut(s)	67, 173, 420, 458, 480
ApeKI	GCWGC	2 cut(s)	102, 743
ArsI	GACNNNNNNTTYG	2 cut(s)	532, 564
Asp718I	GGTACC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	888
AxyI	CCTNAGG	1 cut(s)	609
BaeGI	GKGCMC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	69
BanI	GGYRCC	2 cut(s)	114, 469
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	981
BbvI	GCAGC	2 cut(s)	89, 730
BccI	CCATC	4 cut(s)	146, 460, 559, 704
BceAI	ACGGC	4 cut(s)	55, 115, 435, 895
BciT130I	CCWGG	1 cut(s)	462
BcoDI	GTCTC	2 cut(s)	533, 891
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	505
BisI	GCNGC	2 cut(s)	103, 744
BlsI	GCNGC	2 cut(s)	104, 745
Bme1390I	CCNGG	1 cut(s)	462
BmeT110I	CYCGRG	1 cut(s)	888
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	116, 471
BmrFI	CCNGG	1 cut(s)	462
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	822
BmuI	ACTGGG	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	696
BsaHI	GRCGYC	2 cut(s)	398, 470
BsaJI	CCNNGG	3 cut(s)	423, 461, 473
BsaWI	WCCGGW	1 cut(s)	829
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 614
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	363, 679
Bse21I	CCTNAGG	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	3 cut(s)	423, 461, 473
BseGI	GGATG	2 cut(s)	216, 471
BseLI	CCNNNNNNNGG	2 cut(s)	76, 614
BseMII	CTCAG	4 cut(s)	145, 423, 623, 966
BseNI	ACTGG	2 cut(s)	363, 679
BseRI	GAGGAG	1 cut(s)	588
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	89, 730
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	5 cut(s)	69, 175, 422, 460, 482
BshNI	GGYRCC	2 cut(s)	114, 469
BsiHKAI	GWGCWC	1 cut(s)	981
BsiHKCI	CYCGRG	1 cut(s)	888
BsiSI	CCGG	2 cut(s)	77, 830
BslFI	GGGAC	2 cut(s)	345, 385
BslI	CCNNNNNNNGG	2 cut(s)	76, 614
BsmAI	GTCTC	2 cut(s)	533, 891
BsmFI	GGGAC	2 cut(s)	345, 385
BsnI	GGCC	5 cut(s)	69, 175, 422, 460, 482
BsoBI	CYCGRG	1 cut(s)	888
Bsp1286I	GDGCHC	2 cut(s)	156, 981
Bsp143I	GATC	2 cut(s)	604, 748
BspACI	CCGC	5 cut(s)	18, 80, 260, 584, 799
BspANI	GGCC	5 cut(s)	69, 175, 422, 460, 482
BspCNI	CTCAG	4 cut(s)	144, 424, 622, 967
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	2 cut(s)	116, 471
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	2 cut(s)	599, 743
BspT107I	GGYRCC	2 cut(s)	114, 469
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	363, 679
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	423, 461, 473
BssMI	GATC	2 cut(s)	604, 748
BssNI	GRCGYC	2 cut(s)	398, 470
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	3 cut(s)	488, 625, 701
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	2 cut(s)	398, 470
BstC8I	GCNNGC	3 cut(s)	78, 512, 799
BstDEI	CTNAG	4 cut(s)	131, 432, 609, 975
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	216, 471
BstFNI	CGCG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	2 cut(s)	607, 751
BstMAI	GTCTC	2 cut(s)	533, 891
BstMBI	GATC	2 cut(s)	604, 748
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 82, 102, 404, 419
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	460
BstSFI	CTRYAG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	156
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	89, 730
BstV2I	GAAGAC	1 cut(s)	375
Bsu36I	CCTNAGG	1 cut(s)	609
BsuRI	GGCC	5 cut(s)	69, 175, 422, 460, 482
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	216, 471
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	3 cut(s)	370, 384, 672
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	3 cut(s)	78, 512, 799
CaiI	CAGNNNCTG	1 cut(s)	746
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	173
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	107, 142
CviAII	CATG	4 cut(s)	503, 511, 562, 592
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	4 cut(s)	131, 432, 609, 975
DinI	GGCGCC	1 cut(s)	471
DpnI	GATC	2 cut(s)	606, 750
DpnII	GATC	2 cut(s)	604, 748
DraIII	CACNNNGTG	1 cut(s)	985
EaeI	YGGCCR	2 cut(s)	67, 420
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EciI	GGCGGA	2 cut(s)	95, 573
Eco147I	AGGCCT	1 cut(s)	460
Eco81I	CCTNAGG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	888
EcoRII	CCWGG	1 cut(s)	460
EcoT22I	ATGCAT	1 cut(s)	955
EgeI	GGCGCC	1 cut(s)	471
EheI	GGCGCC	1 cut(s)	471
FaeI	CATG	4 cut(s)	506, 514, 565, 595
FaqI	GGGAC	2 cut(s)	345, 385
FatI	CATG	4 cut(s)	502, 510, 561, 591
FauI	CCCGC	1 cut(s)	806
FauNDI	CATATG	1 cut(s)	955
Fnu4HI	GCNGC	2 cut(s)	103, 744
FokI	GGATG	2 cut(s)	203, 478
Fsp4HI	GCNGC	2 cut(s)	103, 744
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	2 cut(s)	103, 744
GsuI	CTGGAG	1 cut(s)	696
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	5 cut(s)	69, 175, 422, 460, 482
HapII	CCGG	2 cut(s)	77, 830
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	1 cut(s)	472
Hin1I	GRCGYC	2 cut(s)	398, 470
Hin1II	CATG	4 cut(s)	506, 514, 565, 595
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HincII	GTYRAC	2 cut(s)	235, 877
HindII	GTYRAC	2 cut(s)	235, 877
HindIII	AAGCTT	2 cut(s)	446, 638
HinfI	GANTC	3 cut(s)	26, 247, 884
HpaII	CCGG	2 cut(s)	77, 830
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	4 cut(s)	46, 235, 621, 877
Hpy188I	TCNGA	5 cut(s)	31, 134, 246, 252, 271
Hpy188III	TCNNGA	4 cut(s)	220, 491, 611, 776
Hpy8I	GTNNAC	4 cut(s)	46, 235, 621, 877
Hpy99I	CGWCG	2 cut(s)	41, 101
HpyAV	CCTTC	3 cut(s)	333, 762, 827
HpyCH4III	ACNGT	3 cut(s)	488, 625, 701
HpyCH4V	TGCA	4 cut(s)	377, 514, 555, 953
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 82, 102, 404, 419
HpyF3I	CTNAG	4 cut(s)	131, 432, 609, 975
Hsp92I	GRCGYC	2 cut(s)	398, 470
Hsp92II	CATG	4 cut(s)	506, 514, 565, 595
HspAI	GCGC	1 cut(s)	470
KasI	GGCGCC	1 cut(s)	469
KpnI	GGTACC	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	604, 748
LmnI	GCTCC	2 cut(s)	82, 188
Lsp1109I	GCAGC	2 cut(s)	89, 730
LweI	GCATC	1 cut(s)	822
MaeI	CTAG	1 cut(s)	404
MalI	GATC	2 cut(s)	606, 750
MboI	GATC	2 cut(s)	604, 748
MboII	GAAGA	7 cut(s)	80, 205, 286, 346, 380, 542, 706
MhlI	GDGCHC	2 cut(s)	156, 981
MlsI	TGGCCA	1 cut(s)	69
MluNI	TGGCCA	1 cut(s)	69
Mly113I	GGCGCC	1 cut(s)	470
MlyI	GAGTC	1 cut(s)	893
Mox20I	TGGCCA	1 cut(s)	69
Mph1103I	ATGCAT	1 cut(s)	955
MreI	CGCCGGCG	1 cut(s)	76
MroNI	GCCGGC	1 cut(s)	76
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	2 cut(s)	147, 545
Msp20I	TGGCCA	1 cut(s)	69
MspA1I	CMGCKG	2 cut(s)	18, 743
MspI	CCGG	2 cut(s)	77, 830
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	5 cut(s)	48, 82, 102, 404, 419
NaeI	GCCGGC	1 cut(s)	78
NarI	GGCGCC	1 cut(s)	470
NdeI	CATATG	1 cut(s)	955
NdeII	GATC	2 cut(s)	604, 748
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	4 cut(s)	506, 514, 565, 595
NlaIV	GGNNCC	2 cut(s)	116, 471
NmeAIII	GCCGAG	1 cut(s)	498
NsiI	ATGCAT	1 cut(s)	955
NspI	RCATGY	1 cut(s)	514
PaeI	GCATGC	1 cut(s)	514
PceI	AGGCCT	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PdiI	GCCGGC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	26, 247
PkrI	GCNGC	2 cut(s)	104, 745
PleI	GAGTC	1 cut(s)	892
PluTI	GGCGCC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	892
PsiI	TTATAA	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	116, 471
PspPI	GGNCC	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	746
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	147, 545
SatI	GCNGC	2 cut(s)	103, 744
Sau3AI	GATC	2 cut(s)	604, 748
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	2 cut(s)	156, 981
SetI	ASST	8 cut(s)	87, 123, 415, 450, 519, 642, 745, 855
SfaNI	GCATC	1 cut(s)	822
SfcI	CTRYAG	1 cut(s)	375
SfoI	GGCGCC	1 cut(s)	471
SgrAI	CRCCGGYG	1 cut(s)	76
SphI	GCATGC	1 cut(s)	514
SseBI	AGGCCT	1 cut(s)	460
SsiI	CCGC	5 cut(s)	18, 80, 260, 584, 799
SspDI	GGCGCC	1 cut(s)	469
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	1 cut(s)	404
StuI	AGGCCT	1 cut(s)	460
StyD4I	CCNGG	1 cut(s)	460
TaaI	ACNGT	3 cut(s)	488, 625, 701
TaqI	TCGA	2 cut(s)	9, 292
TfiI	GAWTC	2 cut(s)	26, 247
Tru1I	TTAA	2 cut(s)	147, 545
Tru9I	TTAA	2 cut(s)	147, 545
TscAI	CASTG	3 cut(s)	370, 384, 679
TseI	GCWGC	2 cut(s)	102, 743
TspDTI	ATGAA	3 cut(s)	293, 513, 978
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	3 cut(s)	370, 384, 679
XceI	RCATGY	1 cut(s)	514
XspI	CTAG	1 cut(s)	404
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.