Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013900

Physical Location & Seq

Genomic Coordinates Reverse (-)

23140087 .. 23143099

Gene Structure 3013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGTGGCGGCCCTGAGAAAGAGAACCCGAGCCTTAAACCCCCAACTCGTAATGGAAACCGGATCTGAATCCGAAAACGACGACGTTTGCTGCGAGGAATGTGGGTCCGGCCACTCTCCGGCGGAGCTTCTTCTCTGCGACGGATGCGATAAAGGGTATCATCTGTTCTGCCTCAGACCCATTCTCGTTAATGTGCCAAAGGGATCTTGGTTCGGGCCGTGTTGCTCTAAACAGAAGAAACCCAAATCTTTTCCTCTCATTCAGACCAAAATTGTTGACTTCTTTCGGATTCAGAGAAACGTCGAAACACTGGAGAAGTTAAGTCAAGATAATCGGAAGAAGCGAAGGAGGGGAAGTAGTTTGGTGGTGTCGAAAAAGAGGAGGAAAATGTTGCCATATCATCCGAGTGAGGATCCTGCAGTGAGATTGAGGCAAATGGCGTCCCTTGCAACAGCTTTGACGGCCACGGGAACTGAGTTTAGTAATAAGCTAACTTATAGGCCTGGCATGGCGCCGAGGGAGGCCAACTGTCCAGATTATGAACAAGGAGGCATGCAGGTTTTGTCAAAAGAAGATTTTGAAACTTTAAATTTATGCAAAATCATGATGGAAAGAGGAGAATGTCCGCCCCTCATGGTTGTTTTTGATCCTCAGGAAGGGTTCACAGTTGAGGCTGATAAGCCTATTAAGGATTGGACGATAATCACAGAATATGCTGGAGATGTTGATTACTTGAAGAACCGTGAAAATGATGATGGGGATAGCATTATGACATTACTTTCAGCTGCTGATCCTTCAAAAAGCCTTGTCATTTGTCCTGACAAGTATGGCAACATTGCCCGCTACATCAATGGCATCAACAATCACACAAGGGAAGGGAGAAAGAAGCAGAACCTAAAATGCGTAAGATTTGATGTCAACGGCGAGTCTCGAGTATTACTGATTGCCAACAGGGATATACCAAAGGGAGAAAGATTGTATTATGATTACAATGCATATGAGAATGAATATCCTACTGAGCACTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046976 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

344

Amino Acids

39.0

Weight (kDa)

8.14

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	31 - 75	1.2e-07	PHD-finger
SET	PF00856	220 - 331	4.1e-10	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24330
fragaria_vesca	FvH4_7g32150
malus_domestica	MD01G1224300.v1.1
prunus_persica	Prupe.2G314600_v2.0.a1
pyrus_communis	pycom01g23310
rosa_chinensis	RchiOBHm_Chr1g0381761
rosa_laevigata	RLG00000026210
rosa_multiflora	Rmu_sc0008418.1_g000011 Rmu_sc0035117.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278470 Rroxscaffold_7G00185810
rosa_rugosa	Rorug01G0430800
rosa_samantha	Rh1AG454100 Rh1BG411500 Rh1CG425700 Rh1DG443300
rosa_wichuraiana	Rw1G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	511
AciI	CCGC	4 cut(s)	8, 122, 626, 841
AclWI	GGATC	6 cut(s)	70, 211, 407, 420, 641, 785
AcoI	YGGCCR	2 cut(s)	109, 462
AcsI	RAATTY	1 cut(s)	589
AcyI	GRCGYC	2 cut(s)	440, 512
AdeI	CACNNNGTG	1 cut(s)	1027
AfiI	CCNNNNNNNGG	2 cut(s)	118, 656
AgsI	TTSAA	3 cut(s)	581, 736, 798
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	4 cut(s)	127, 455, 490, 785
AluI	AGCT	4 cut(s)	127, 455, 490, 785
Alw21I	GWGCWC	1 cut(s)	1023
Alw26I	GTCTC	1 cut(s)	933
AlwI	GGATC	6 cut(s)	70, 211, 407, 420, 641, 785
AlwNI	CAGNNNCTG	1 cut(s)	788
Ama87I	CYCGRG	2 cut(s)	27, 930
AoxI	GGCC	6 cut(s)	9, 109, 215, 462, 500, 522
ApeKI	GCWGC	2 cut(s)	90, 785
ApoI	RAATTY	1 cut(s)	589
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	3 cut(s)	10, 105, 215
AvaI	CYCGRG	2 cut(s)	27, 930
AvaII	GGWCC	1 cut(s)	105
AxyI	CCTNAGG	1 cut(s)	651
BamHI	GGATCC	1 cut(s)	412
BanI	GGYRCC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	1023
BbvI	GCAGC	2 cut(s)	77, 772
BccI	CCATC	2 cut(s)	601, 749
BceAI	ACGGC	3 cut(s)	202, 477, 937
BciT130I	CCWGG	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	933
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	547
BisI	GCNGC	3 cut(s)	9, 91, 786
BlsI	GCNGC	3 cut(s)	10, 92, 787
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	1 cut(s)	105
BmeT110I	CYCGRG	2 cut(s)	27, 930
BmgT120I	GGNCC	3 cut(s)	10, 105, 215
BmiI	GGNNCC	3 cut(s)	106, 414, 513
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	2 cut(s)	134, 864
BpmI	CTGGAG	2 cut(s)	332, 738
BsaBI	GATNNNNATC	1 cut(s)	67
BsaHI	GRCGYC	2 cut(s)	440, 512
BsaJI	CCNNGG	2 cut(s)	465, 515
BsaWI	WCCGGW	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 656
Bse1I	ACTGG	1 cut(s)	315
Bse21I	CCTNAGG	1 cut(s)	651
Bse3DI	GCAATG	1 cut(s)	834
Bse8I	GATNNNNATC	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	2 cut(s)	465, 515
BseGI	GGATG	2 cut(s)	149, 400
BseJI	GATNNNNATC	1 cut(s)	67
BseLI	CCNNNNNNNGG	2 cut(s)	118, 656
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	5 cut(s)	5, 187, 465, 665, 1008
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	2 cut(s)	394, 630
BseXI	GCAGC	2 cut(s)	77, 772
BshFI	GGCC	6 cut(s)	11, 111, 217, 464, 502, 524
BshNI	GGYRCC	1 cut(s)	511
BsiHKAI	GWGCWC	1 cut(s)	1023
BsiHKCI	CYCGRG	2 cut(s)	27, 930
BsiSI	CCGG	3 cut(s)	60, 108, 119
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	2 cut(s)	118, 656
BsmAI	GTCTC	1 cut(s)	933
BsmFI	GGGAC	1 cut(s)	427
BsnI	GGCC	6 cut(s)	11, 111, 217, 464, 502, 524
BsoBI	CYCGRG	2 cut(s)	27, 930
Bsp1286I	GDGCHC	1 cut(s)	1023
Bsp143I	GATC	5 cut(s)	62, 203, 412, 646, 790
BspACI	CCGC	4 cut(s)	8, 122, 626, 841
BspANI	GGCC	6 cut(s)	11, 111, 217, 464, 502, 524
BspCNI	CTCAG	5 cut(s)	6, 186, 466, 664, 1009
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	3 cut(s)	106, 414, 513
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	6 cut(s)	70, 211, 407, 420, 641, 785
BspT107I	GGYRCC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	834
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	465, 515
BssMI	GATC	5 cut(s)	62, 203, 412, 646, 790
BssNI	GRCGYC	2 cut(s)	440, 512
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	530, 667, 743
BstACI	GRCGYC	2 cut(s)	440, 512
BstC8I	GCNNGC	2 cut(s)	554, 841
BstDEI	CTNAG	5 cut(s)	14, 173, 474, 651, 1017
BstDSI	CCRYGG	1 cut(s)	465
BstENI	CCTNNNNNAGG	1 cut(s)	654
BstF5I	GGATG	2 cut(s)	149, 400
BstH2I	RGCGCY	1 cut(s)	515
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	5 cut(s)	65, 206, 415, 649, 793
BstMAI	GTCTC	1 cut(s)	933
BstMBI	GATC	5 cut(s)	62, 203, 412, 646, 790
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 446, 461
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	2 cut(s)	77, 772
BstX2I	RGATCY	3 cut(s)	62, 203, 412
BstYI	RGATCY	3 cut(s)	62, 203, 412
Bsu36I	CCTNAGG	1 cut(s)	651
BsuRI	GGCC	6 cut(s)	11, 111, 217, 464, 502, 524
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	149, 400
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	308, 426
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	554, 841
CaiI	CAGNNNCTG	1 cut(s)	788
CciI	TCATGA	1 cut(s)	603
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	3 cut(s)	10, 105, 215
CseI	GACGC	1 cut(s)	429
CviAII	CATG	4 cut(s)	508, 553, 604, 634
DdeI	CTNAG	5 cut(s)	14, 173, 474, 651, 1017
DinI	GGCGCC	1 cut(s)	513
DpnI	GATC	5 cut(s)	64, 205, 414, 648, 792
DpnII	GATC	5 cut(s)	62, 203, 412, 646, 790
DraI	TTTAAA	1 cut(s)	588
DraIII	CACNNNGTG	1 cut(s)	1027
EaeI	YGGCCR	2 cut(s)	109, 462
EciI	GGCGGA	2 cut(s)	137, 615
Eco147I	AGGCCT	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	105
Eco81I	CCTNAGG	1 cut(s)	651
Eco88I	CYCGRG	2 cut(s)	27, 930
EcoNI	CCTNNNNNAGG	1 cut(s)	654
EcoRII	CCWGG	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	997
EgeI	GGCGCC	1 cut(s)	513
EheI	GGCGCC	1 cut(s)	513
FaeI	CATG	4 cut(s)	511, 556, 607, 637
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	4 cut(s)	507, 552, 603, 633
FauI	CCCGC	1 cut(s)	848
FauNDI	CATATG	1 cut(s)	997
Fnu4HI	GCNGC	3 cut(s)	9, 91, 786
FokI	GGATG	2 cut(s)	156, 387
Fsp4HI	GCNGC	3 cut(s)	9, 91, 786
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	3 cut(s)	9, 91, 786
GsuI	CTGGAG	2 cut(s)	332, 738
HaeII	RGCGCY	1 cut(s)	515
HaeIII	GGCC	6 cut(s)	11, 111, 217, 464, 502, 524
HapII	CCGG	3 cut(s)	60, 108, 119
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	1 cut(s)	514
Hin1I	GRCGYC	2 cut(s)	440, 512
Hin1II	CATG	4 cut(s)	511, 556, 607, 637
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	2 cut(s)	277, 919
HindII	GTYRAC	2 cut(s)	277, 919
HinfI	GANTC	3 cut(s)	68, 289, 926
HpaII	CCGG	3 cut(s)	60, 108, 119
Hpy166II	GTNNAC	3 cut(s)	277, 663, 919
Hpy188I	TCNGA	8 cut(s)	67, 73, 176, 264, 288, 294, 336, 405
Hpy188III	TCNNGA	6 cut(s)	326, 533, 604, 653, 818, 930
Hpy8I	GTNNAC	3 cut(s)	277, 663, 919
Hpy99I	CGWCG	4 cut(s)	83, 86, 143, 305
HpyAV	CCTTC	4 cut(s)	339, 650, 804, 869
HpyCH4III	ACNGT	3 cut(s)	530, 667, 743
HpyCH4IV	ACGT	2 cut(s)	84, 300
HpyCH4V	TGCA	5 cut(s)	419, 449, 556, 597, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 446, 461
HpyF3I	CTNAG	5 cut(s)	14, 173, 474, 651, 1017
HpySE526I	ACGT	2 cut(s)	84, 300
Hsp92I	GRCGYC	2 cut(s)	440, 512
Hsp92II	CATG	4 cut(s)	511, 556, 607, 637
HspAI	GCGC	1 cut(s)	512
KasI	GGCGCC	1 cut(s)	511
Kzo9I	GATC	5 cut(s)	62, 203, 412, 646, 790
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	2 cut(s)	77, 772
LweI	GCATC	2 cut(s)	134, 864
MaeII	ACGT	2 cut(s)	84, 300
MalI	GATC	5 cut(s)	64, 205, 414, 648, 792
MboI	GATC	5 cut(s)	62, 203, 412, 646, 790
MboII	GAAGA	5 cut(s)	122, 247, 349, 584, 748
MflI	RGATCY	3 cut(s)	62, 203, 412
MhlI	GDGCHC	1 cut(s)	1023
MluCI	AATT	2 cut(s)	270, 589
Mly113I	GGCGCC	1 cut(s)	512
MlyI	GAGTC	1 cut(s)	935
Mph1103I	ATGCAT	1 cut(s)	997
MseI	TTAA	5 cut(s)	35, 189, 320, 587, 687
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	785
MspI	CCGG	3 cut(s)	60, 108, 119
MspR9I	CCNGG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	3 cut(s)	144, 446, 461
NarI	GGCGCC	1 cut(s)	512
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	5 cut(s)	62, 203, 412, 646, 790
NlaIII	CATG	4 cut(s)	511, 556, 607, 637
NlaIV	GGNNCC	3 cut(s)	106, 414, 513
NmeAIII	GCCGAG	1 cut(s)	540
NsiI	ATGCAT	1 cut(s)	997
NspI	RCATGY	1 cut(s)	556
PaeI	GCATGC	1 cut(s)	556
PaeR7I	CTCGAG	1 cut(s)	930
PagI	TCATGA	1 cut(s)	603
PceI	AGGCCT	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 340
PfeI	GAWTC	2 cut(s)	68, 289
PkrI	GCNGC	3 cut(s)	10, 92, 787
PleI	GAGTC	1 cut(s)	934
PluTI	GGCGCC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	934
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	3 cut(s)	106, 414, 513
PspPI	GGNCC	3 cut(s)	10, 105, 215
PsrI	GAACNNNNNNTAC	2 cut(s)	149, 181
PstI	CTGCAG	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	3 cut(s)	62, 203, 412
PvuII	CAGCTG	1 cut(s)	785
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	5 cut(s)	35, 189, 320, 587, 687
SatI	GCNGC	3 cut(s)	9, 91, 786
Sau3AI	GATC	5 cut(s)	62, 203, 412, 646, 790
Sau96I	GGNCC	3 cut(s)	10, 105, 215
SchI	GAGTC	1 cut(s)	935
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	1 cut(s)	1023
SetI	ASST	8 cut(s)	87, 129, 303, 457, 492, 561, 787, 897
SfaNI	GCATC	2 cut(s)	134, 864
SfcI	CTRYAG	1 cut(s)	417
SfoI	GGCGCC	1 cut(s)	513
Sfr274I	CTCGAG	1 cut(s)	930
SinI	GGWCC	1 cut(s)	105
SlaI	CTCGAG	1 cut(s)	930
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	930
SmoI	CTYRAG	1 cut(s)	930
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	2 cut(s)	270, 589
SseBI	AGGCCT	1 cut(s)	502
SsiI	CCGC	4 cut(s)	8, 122, 626, 841
SspDI	GGCGCC	1 cut(s)	511
StuI	AGGCCT	1 cut(s)	502
StyD4I	CCNGG	1 cut(s)	502
TaaI	ACNGT	3 cut(s)	530, 667, 743
TaiI	ACGT	2 cut(s)	87, 303
TaqI	TCGA	3 cut(s)	303, 371, 931
TasI	AATT	2 cut(s)	270, 589
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	68, 289
Tru1I	TTAA	5 cut(s)	35, 189, 320, 587, 687
Tru9I	TTAA	5 cut(s)	35, 189, 320, 587, 687
TscAI	CASTG	2 cut(s)	315, 426
TseI	GCWGC	2 cut(s)	90, 785
TspDTI	ATGAA	2 cut(s)	555, 1020
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	315, 426
VpaK11BI	GGWCC	1 cut(s)	105
XagI	CCTNNNNNAGG	1 cut(s)	654
XapI	RAATTY	1 cut(s)	589
XceI	RCATGY	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	204
XhoI	CTCGAG	1 cut(s)	930
Zsp2I	ATGCAT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.