Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009276

Physical Location & Seq

Genomic Coordinates Reverse (-)

8633114 .. 8640217

Gene Structure 7104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2841 bp

ATGAGTTCATTCTCGATCACTCGTAAGAAAACACCATTCCAGAAACACAGAGAAGAAGAAGAAGCTAGGAAGAAGAAAGCAGAGGATGAAACGGCTCGTTTGTATCAAGAATTCGTGGAATCGTTTCAAGGGGATAATGCAACTACTAAGACTTTTGTTCGAGGTGGGACGATAAATCCTGGTGACAAGCCTAAGGTTGATTCTGAAGGTGAAAAGTCCAAAGATGGGGGTTCGGTTTCAAAGAAGGGGAGTAGGTATGTTCCCTCTTTCCTTCCACCACCACTGGCATCCAAGGGTAAAGAACCGGAGAAGAAGAGGGAGGAGGAGAGGCCTAGGGAAAGAGAAAAGGGAAAGACTCGAAATATAGATAATTTCATGGAGGAGTTGAAACGTGAACAAGAAATGAGAGAAAGACGAAACCAGGATCGTGACCGTCAGGGCGATAGCTCGCCATCTAGCCGCTTTGATGAGCTACCTGATGATTTTGATCCCAGTGGGAGGCCAGGATCGTTTGACGATGGTGACCCACAAACTACGAATCTGTATGTTGGGAATCTGTCCCCAAAGGTTGATGAGAATTTCCTTCTGCGCACTTTCGGAAGATTTGGGCCCATAGCTAGTGTCAAGATTATGTGGCCAAGAACAGATGAGGAGAAGAGGCGACAAAGAAACTGTGGCTTTGTTTCCTTCATGAATAGGGCTGATGGACAAGCTGCAAAAGATGAAATGCAAGGGATCATCGTGTACGAGTATGAACTGAAAATTGGATGGGGTAAAGCAGTTTCTCTACCGTCACAAGCATTACCCGCTCCACCACCTGGACATATGGCTATTCGGAGTAAGGAGGGCTGCAACTTGGTTTTTTCTGGTCAAACGGGTCCACCGATAATAACTTCTGTTCCAAATCAAAATTCTGAGCTGGTTCTTACCCCTAATGTTCCGGATATCACTGTTGTTACCCCTGAGGACGAGCACCTCAGACATGTCATTGATACATTGGCACTCTATGTTCTGGATGGTGAATGTGCTTTTGAACAAGCTATCATGGAGAGGGGCCGTGGGAATCCACTGTTCAAGTTTATGTTCGAGCTTGGCTCAAAGGAGCATACTTACTACGTCTGGAGACTATATTCCTTCGCTCAGGGTGATACACTTCAAAGGTGGAGAACAGAGCCGTATATCATGATAACTGGTAGTGGAAGATGGATACCGCCACCACTGCCTGTAACTAGGACCCAGGAGCACGAAAAAGAGTCTGCCAGCACTTATGCGGCGGGAAGAACCAGACGTGCGGAAGTTGAGAGGACTCTGACCGATCCTCAGAGGGATGAGTTCGAGGACATGTTGCGTGCTCTTACTTTAGAAAGGAGTCAGATAAAAGAAGCTATGGGTTTCGCTTTAGATAATGCAGATGCAGCTGGAGAGGTTGTTGAAGTTTTGACGGAGTCCCTGACTCTAAAAGAGACATCAATTCCAACCAAAGTTGCTAGACTCATGCTTGTGTCTGATATTCTTCATAATAGCAGTGCACGTGTTAAAAATGCATCTGCATACCGAACCAAATTCGAAGCAACTCTACCTGATATAATGGAAAGCTTCAATGATCTGTACCGAAGCATAACTGGAAGAATTACTGCTGAGGCTCTAAAAGAACGGGTTCTCAAAGTACTGCAAGTATGGGCAGATTGGTTTCTCTTTTCAGACGCATACATATATGGACTACGTTCCACATTTCTCCGATCAGGAGTCTCTGGTGTTACCTCATTTCATTCTATCTGCGGTGATGCACCTGAAATAGAGAACAAAAGTTACGCTGACAATATGAGTGATATTGGAAAGATAAATCCAGATGCTGCACTGGCAATAGGCAAAGGAGCTGCAAGGCAAGAGCTGATGAATTTACCAATTGCTGAGCTTGAGAGGCGTTGTCGGCACAACGGACTGTCTCTTGTAGGAGGTAGAGTAATGATGGTTACCCGGCTACTAAGCCTTGAAGACACAGAGAAACAACGCGGCTATGAAGCAGTGGATGAAATTCCAAAGCATCCGCAAAACCATTCAACTTGGGAAGAAGTTAAGAGTGAGCGGGAGCATATCAAGAACAGCTACGCAGAGGTTGAAATGAAAGAGCCTGTGAATCTACCCACGACAATACCAATCCCACAGCCTGAGCTGAAAGCCTTTGTGGGAAAAGAGAAGAATGAACTCATATTGCCAGCTTCAAAATGGGCGAGAGACGATGATGAAGCTGATGATGAACAAAAGAGGAGCTCCTCTTCAGGAAGTGACAATACTGGTGGGATAACTTTCAAGGCCGATGGCGAGGATCTCAAGGGAAATGATTGTGTCCGTGCCCAACCTGACAACGGAATGGACGAGGAACAAAGACAAAAGCGGAGACGCATAGAAGTTGCTTTGATAGAGTATCGTGAAACTCTTGAGGAACAGGGGATGAAAAACCCCGAAGAGATAGAGAGAAAAGTAGAAATAAACAGAAAGAGGCTTGAAGTCGATTATGGCTTATCAGGACCTAACGAGGGCAACAGAAATCAGAAATCAATAATAGAGCGGAAGGAGAAGCGTGAAGATTCACAAGAGTCCTCTAAAAAGCGGCACCGTGGGGAAAACAAGAGCCAAAGTCCGCCACGGAAATCATCAACGAGGGAGAGAGATCATGACTTGGGGAGAGACAGGGATAGAGAGAGACACAGAGACAGAGATAGGCAACATGATTTGAACAGGGATCGAGATCGACGTGAAAAGAGTTCAAGCCACGATCGAGACGATAATGATAGAAGCAAAGAGAGAGACAGGGATTGGCGCAGACGAGGCACGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Surp cwf21

Protein Analysis

946

Amino Acids

108.28

Weight (kDa)

6.23

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	181 - 253	1.2e-11	RNA recognition motif
Surp	PF01805	327 - 379	1.5e-13	Surp module
CID	PF04818	444 - 571	2.2e-08	CID domain
cwf21	PF08312	796 - 836	4.7e-09	cwf21 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10800 AT5G25060
fragaria_vesca	FvH4_2g41230 FvH4_2g41230 FvH4_2g41230
malus_domestica	MD08G1054700.v1.1 MD15G1042300.v1.1
prunus_persica	Prupe.1G395500_v2.0.a1 Prupe.1G395500_v2.0.a1 Prupe.1G395500_v2.0.a1 Prupe.1G395500_v2.0.a1
pyrus_communis	pycom08g04510 pycom15g03940
rosa_chinensis	RchiOBHm_Chr6g0299281
rosa_laevigata	RLG00000011446
rosa_roxburghii	Rroxscaffold_7G00168830
rosa_rugosa	Rorug06G0286800
rosa_samantha	Rh6AG398300 Rh6BG406700 Rh6CG412800 Rh6DG399500
rosa_wichuraiana	Rw6G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	590
AccB1I	GGYRCC	1 cut(s)	2613
AccB7I	CCANNNNNTGG	1 cut(s)	818
AccBSI	CCGCTC	3 cut(s)	809, 2086, 2569
AccII	CGCG	1 cut(s)	2013
AccIII	TCCGGA	1 cut(s)	940
AclWI	GGATC	7 cut(s)	432, 482, 514, 743, 1310, 2334, 2751
AcoI	YGGCCR	1 cut(s)	635
AcsI	RAATTY	6 cut(s)	110, 577, 910, 1562, 1897, 2034
AcuI	CTGAAG	2 cut(s)	225, 2262
AcvI	CACGTG	1 cut(s)	1532
AfaI	GTAC	3 cut(s)	746, 1610, 1668
AfiI	CCNNNNNNNGG	5 cut(s)	225, 498, 818, 2366, 2537
AflIII	ACRYGT	3 cut(s)	982, 1341, 1531
AjiI	CACGTC	2 cut(s)	1289, 2756
AjnI	CCWGG	5 cut(s)	178, 420, 502, 817, 1236
AjuI	GAANNNNNNNTTGG	4 cut(s)	747, 779, 895, 927
Alw21I	GWGCWC	5 cut(s)	975, 1245, 1354, 1531, 2273
Alw44I	GTGCAC	1 cut(s)	1527
AlwI	GGATC	7 cut(s)	432, 482, 514, 743, 1310, 2334, 2751
AlwNI	CAGNNNCTG	1 cut(s)	1853
Aor13HI	TCCGGA	1 cut(s)	940
AoxI	GGCC	6 cut(s)	329, 500, 608, 635, 1054, 2313
ApaI	GGGCCC	1 cut(s)	612
ApaLI	GTGCAC	1 cut(s)	1527
ApeKI	GCWGC	5 cut(s)	713, 849, 1415, 1853, 1877
ApoI	RAATTY	6 cut(s)	110, 577, 910, 1562, 1897, 2034
Asp700I	GAANNNNTTC	2 cut(s)	123, 1656
AspA2I	CCTAGG	1 cut(s)	332
AspLEI	GCGC	2 cut(s)	591, 2823
AspS9I	GGNCC	6 cut(s)	608, 609, 878, 1054, 1233, 2528
AsuC2I	CCSGG	1 cut(s)	1978
AsuHPI	GGTGA	6 cut(s)	194, 221, 533, 1031, 1157, 1793
AsuII	TTCGAA	1 cut(s)	1566
AvaII	GGWCC	3 cut(s)	878, 1233, 2528
AvrII	CCTAGG	1 cut(s)	332
AxyI	CCTNAGG	2 cut(s)	192, 963
BaeGI	GKGCMC	3 cut(s)	612, 1531, 2356
BalI	TGGCCA	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	2613
BanII	GRGCYC	2 cut(s)	612, 2273
BarI	GAAGNNNNNNTAC	4 cut(s)	1560, 1592, 2275, 2307
BauI	CACGAG	1 cut(s)	2833
BbrPI	CACGTG	1 cut(s)	1532
BbsI	GAAGAC	1 cut(s)	2001
Bbv12I	GWGCWC	5 cut(s)	975, 1245, 1354, 1531, 2273
BbvCI	CCTCAGC	1 cut(s)	1638
BbvI	GCAGC	5 cut(s)	700, 836, 1427, 1840, 1864
BccI	CCATC	9 cut(s)	218, 460, 512, 698, 762, 1010, 1197, 1963, 2312
BceAI	ACGGC	3 cut(s)	108, 1041, 1159
BciT130I	CCWGG	5 cut(s)	180, 422, 504, 819, 1238
BciVI	GTATCC	1 cut(s)	1200
BcnI	CCSGG	1 cut(s)	1978
BfaI	CTAG	6 cut(s)	66, 333, 456, 618, 1230, 1488
BfuI	GTATCC	1 cut(s)	1200
BisI	GCNGC	9 cut(s)	460, 714, 850, 1272, 1416, 1854, 1878, 2014, 2612
BlnI	CCTAGG	1 cut(s)	332
BlpI	GCTNAGC	1 cut(s)	1911
BlsI	GCNGC	9 cut(s)	461, 715, 851, 1273, 1417, 1855, 1879, 2015, 2613
BmcAI	AGTACT	1 cut(s)	1668
Bme1390I	CCNGG	6 cut(s)	180, 422, 504, 819, 1238, 1978
Bme18I	GGWCC	3 cut(s)	878, 1233, 2528
BmgBI	CACGTC	2 cut(s)	1289, 2756
BmgT120I	GGNCC	6 cut(s)	608, 609, 878, 1054, 1233, 2528
BmiI	GGNNCC	5 cut(s)	610, 879, 1055, 1235, 2615
BmrFI	CCNGG	6 cut(s)	180, 422, 504, 819, 1238, 1978
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	6 cut(s)	296, 1402, 1553, 1774, 1840, 2053
BmuI	ACTGGG	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	2001
BplI	GAGNNNNNCTC	2 cut(s)	1079, 1111
BpmI	CTGGAG	2 cut(s)	1141, 1440
Bpu10I	CCTNAGC	3 cut(s)	1140, 1638, 2169
Bpu1102I	GCTNAGC	1 cut(s)	1911
Bpu14I	TTCGAA	1 cut(s)	1566
BpuEI	CTTGAG	3 cut(s)	1937, 2315, 2459
BpuMI	CCSGG	1 cut(s)	1978
BsaAI	YACGTR	1 cut(s)	1532
BsaBI	GATNNNNATC	2 cut(s)	486, 2748
BsaJI	CCNNGG	6 cut(s)	291, 332, 1057, 1236, 2617, 2645
BsaWI	WCCGGW	2 cut(s)	304, 940
BsaXI	ACNNNNNCTCC	4 cut(s)	1413, 1443, 1947, 1977
Bsc4I	CCNNNNNNNGG	5 cut(s)	225, 498, 818, 2366, 2537
Bse1I	ACTGG	6 cut(s)	288, 492, 1195, 1627, 1863, 2299
Bse21I	CCTNAGG	2 cut(s)	192, 963
Bse8I	GATNNNNATC	2 cut(s)	486, 2748
BseAI	TCCGGA	1 cut(s)	940
BseBI	CCWGG	5 cut(s)	180, 422, 504, 819, 1238
BseDI	CCNNGG	6 cut(s)	291, 332, 1057, 1236, 2617, 2645
BseGI	GGATG	8 cut(s)	91, 287, 773, 1021, 1333, 2035, 2044, 2457
BseJI	GATNNNNATC	2 cut(s)	486, 2748
BseLI	CCNNNNNNNGG	5 cut(s)	225, 498, 818, 2366, 2537
BseMII	CTCAG	8 cut(s)	906, 954, 991, 1154, 1334, 1629, 1902, 2160
BseNI	ACTGG	6 cut(s)	288, 492, 1195, 1627, 1863, 2299
BseRI	GAGGAG	6 cut(s)	335, 338, 395, 665, 2263, 2281
BseSI	GKGCMC	3 cut(s)	612, 1531, 2356
BseXI	GCAGC	5 cut(s)	700, 836, 1427, 1840, 1864
BsgI	GTGCAG	1 cut(s)	1839
Bsh1236I	CGCG	1 cut(s)	2013
Bsh1285I	CGRYCG	1 cut(s)	2779
BshFI	GGCC	6 cut(s)	331, 502, 610, 637, 1056, 2315
BshNI	GGYRCC	1 cut(s)	2613
BsiEI	CGRYCG	1 cut(s)	2779
BsiHKAI	GWGCWC	5 cut(s)	975, 1245, 1354, 1531, 2273
BsiSI	CCGG	3 cut(s)	305, 941, 1978
BslFI	GGGAC	3 cut(s)	181, 544, 1432
BslI	CCNNNNNNNGG	5 cut(s)	225, 498, 818, 2366, 2537
BsmBI	CGTCTC	3 cut(s)	2229, 2392, 2775
BsmFI	GGGAC	3 cut(s)	181, 544, 1432
BsnI	GGCC	6 cut(s)	331, 502, 610, 637, 1056, 2315
Bsp119I	TTCGAA	1 cut(s)	1566
Bsp120I	GGGCCC	1 cut(s)	608
Bsp1286I	GDGCHC	7 cut(s)	612, 975, 1245, 1354, 1531, 2273, 2356
Bsp13I	TCCGGA	1 cut(s)	940
Bsp1720I	GCTNAGC	1 cut(s)	1911
BspANI	GGCC	6 cut(s)	331, 502, 610, 637, 1056, 2315
BspCNI	CTCAG	8 cut(s)	907, 955, 990, 1153, 1333, 1630, 1903, 2161
BspEI	TCCGGA	1 cut(s)	940
BspFNI	CGCG	1 cut(s)	2013
BspHI	TCATGA	3 cut(s)	690, 1182, 2674
BspLI	GGNNCC	5 cut(s)	610, 879, 1055, 1235, 2615
BspPI	GGATC	7 cut(s)	432, 482, 514, 743, 1310, 2334, 2751
BspT104I	TTCGAA	1 cut(s)	1566
BspT107I	GGYRCC	1 cut(s)	2613
BsrBI	CCGCTC	3 cut(s)	809, 2086, 2569
BsrI	ACTGG	6 cut(s)	288, 492, 1195, 1627, 1863, 2299
BssECI	CCNNGG	6 cut(s)	291, 332, 1057, 1236, 2617, 2645
BssSI	CACGAG	1 cut(s)	2833
BssT1I	CCWWGG	2 cut(s)	291, 332
Bst2BI	CACGAG	1 cut(s)	2833
Bst2UI	CCWGG	5 cut(s)	180, 422, 504, 819, 1238
Bst4CI	ACNGT	7 cut(s)	434, 674, 792, 952, 1071, 1944, 2618
Bst6I	CTCTTC	4 cut(s)	308, 650, 2281, 2460
BstBAI	YACGTR	1 cut(s)	1532
BstBI	TTCGAA	1 cut(s)	1566
BstC8I	GCNNGC	4 cut(s)	449, 1261, 1350, 2217
BstDSI	CCRYGG	3 cut(s)	1057, 2617, 2645
BstEII	GGTNACC	2 cut(s)	521, 1972
BstF5I	GGATG	8 cut(s)	91, 287, 773, 1021, 1333, 2035, 2044, 2457
BstFNI	CGCG	1 cut(s)	2013
BstHHI	GCGC	2 cut(s)	591, 2823
BstMCI	CGRYCG	1 cut(s)	2779
BstMWI	GCNNNNNNNGC	7 cut(s)	806, 1219, 1415, 1859, 1921, 1930, 2829
BstNI	CCWGG	5 cut(s)	180, 422, 504, 819, 1238
BstNSI	RCATGY	2 cut(s)	986, 1345
BstPI	GGTNACC	2 cut(s)	521, 1972
BstSCI	CCNGG	6 cut(s)	178, 420, 502, 817, 1236, 1976
BstSLI	GKGCMC	3 cut(s)	612, 1531, 2356
BstUI	CGCG	1 cut(s)	2013
BstV1I	GCAGC	5 cut(s)	700, 836, 1427, 1840, 1864
BstV2I	GAAGAC	1 cut(s)	2001
BstX2I	RGATCY	1 cut(s)	2326
BstYI	RGATCY	1 cut(s)	2326
Bsu36I	CCTNAGG	2 cut(s)	192, 963
BsuI	GTATCC	1 cut(s)	1200
BsuRI	GGCC	6 cut(s)	331, 502, 610, 637, 1056, 2315
BtgI	CCRYGG	3 cut(s)	1057, 2617, 2645
BtrI	CACGTC	2 cut(s)	1289, 2756
BtsCI	GGATG	8 cut(s)	91, 287, 773, 1021, 1333, 2035, 2044, 2457
BtsI	GCAGTG	3 cut(s)	1217, 1531, 2031
BtsIMutI	CAGTG	8 cut(s)	281, 499, 948, 1067, 1217, 1531, 1856, 2031
Cac8I	GCNNGC	4 cut(s)	449, 1261, 1350, 2217
CaiI	CAGNNNCTG	1 cut(s)	1853
CciI	TCATGA	3 cut(s)	690, 1182, 2674
CfoI	GCGC	2 cut(s)	591, 2823
Cfr13I	GGNCC	6 cut(s)	608, 609, 878, 1054, 1233, 2528
CseI	GACGC	2 cut(s)	1712, 2409
Csp6I	GTAC	3 cut(s)	745, 1609, 1667
CspCI	CAANNNNNGTGG	2 cut(s)	2278, 2313
CviAII	CATG	9 cut(s)	376, 691, 983, 1045, 1183, 1342, 1495, 2675, 2729
CviQI	GTAC	3 cut(s)	745, 1609, 1667
EaeI	YGGCCR	1 cut(s)	635
Eam1104I	CTCTTC	4 cut(s)	308, 650, 2281, 2460
EarI	CTCTTC	4 cut(s)	308, 650, 2281, 2460
EciI	GGCGGA	1 cut(s)	2631
Ecl136II	GAGCTC	1 cut(s)	2271
Eco130I	CCWWGG	2 cut(s)	291, 332
Eco147I	AGGCCT	1 cut(s)	331
Eco24I	GRGCYC	2 cut(s)	612, 2273
Eco32I	GATATC	1 cut(s)	946
Eco47I	GGWCC	3 cut(s)	878, 1233, 2528
Eco53kI	GAGCTC	1 cut(s)	2271
Eco57I	CTGAAG	2 cut(s)	225, 2262
Eco72I	CACGTG	1 cut(s)	1532
Eco81I	CCTNAGG	2 cut(s)	192, 963
Eco91I	GGTNACC	2 cut(s)	521, 1972
EcoICRI	GAGCTC	1 cut(s)	2271
EcoO109I	RGGNCCY	2 cut(s)	1233, 2528
EcoO65I	GGTNACC	2 cut(s)	521, 1972
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	5 cut(s)	178, 420, 502, 817, 1236
EcoRV	GATATC	1 cut(s)	946
EcoT14I	CCWWGG	2 cut(s)	291, 332
EcoT22I	ATGCAT	1 cut(s)	1546
EcoT38I	GRGCYC	2 cut(s)	612, 2273
ErhI	CCWWGG	2 cut(s)	291, 332
Esp3I	CGTCTC	3 cut(s)	2229, 2392, 2775
FaeI	CATG	9 cut(s)	379, 694, 986, 1048, 1186, 1345, 1498, 2678, 2732
FaqI	GGGAC	3 cut(s)	181, 544, 1432
FatI	CATG	9 cut(s)	375, 690, 982, 1044, 1182, 1341, 1494, 2674, 2728
FauI	CCCGC	3 cut(s)	814, 1267, 2079
FauNDI	CATATG	1 cut(s)	825
Fnu4HI	GCNGC	9 cut(s)	460, 714, 850, 1272, 1416, 1854, 1878, 2014, 2612
FokI	GGATG	8 cut(s)	98, 274, 780, 1028, 1340, 2031, 2042, 2464
FriOI	GRGCYC	2 cut(s)	612, 2273
Fsp4HI	GCNGC	9 cut(s)	460, 714, 850, 1272, 1416, 1854, 1878, 2014, 2612
FspBI	CTAG	6 cut(s)	66, 333, 456, 618, 1230, 1488
FspI	TGCGCA	1 cut(s)	590
GlaI	GCGC	2 cut(s)	590, 2822
GluI	GCNGC	9 cut(s)	460, 714, 850, 1272, 1416, 1854, 1878, 2014, 2612
GsuI	CTGGAG	2 cut(s)	1141, 1440
HaeIII	GGCC	6 cut(s)	331, 502, 610, 637, 1056, 2315
HapII	CCGG	3 cut(s)	305, 941, 1978
HgaI	GACGC	2 cut(s)	1712, 2409
HhaI	GCGC	2 cut(s)	591, 2823
Hin1II	CATG	9 cut(s)	379, 694, 986, 1048, 1186, 1345, 1498, 2678, 2732
Hin6I	GCGC	2 cut(s)	589, 2821
HinP1I	GCGC	2 cut(s)	589, 2821
HindIII	AAGCTT	1 cut(s)	1594
HpaII	CCGG	3 cut(s)	305, 941, 1978
HphI	GGTGA	6 cut(s)	194, 221, 533, 1031, 1157, 1793
Hpy166II	GTNNAC	4 cut(s)	395, 745, 881, 1529
Hpy8I	GTNNAC	4 cut(s)	395, 745, 881, 1529
Hpy99I	CGWCG	1 cut(s)	2757
HpyAV	CCTTC	7 cut(s)	200, 238, 281, 593, 697, 1144, 2566
HpyCH4III	ACNGT	7 cut(s)	434, 674, 792, 952, 1071, 1944, 2618
HpyCH4IV	ACGT	6 cut(s)	391, 1116, 1288, 1531, 1723, 2755
HpyF10VI	GCNNNNNNNGC	7 cut(s)	806, 1219, 1415, 1859, 1921, 1930, 2829
HpySE526I	ACGT	6 cut(s)	391, 1116, 1288, 1531, 1723, 2755
Hsp92II	CATG	9 cut(s)	379, 694, 986, 1048, 1186, 1345, 1498, 2678, 2732
HspAI	GCGC	2 cut(s)	589, 2821
Kpn2I	TCCGGA	1 cut(s)	940
LmnI	GCTCC	7 cut(s)	814, 1102, 1240, 1874, 2089, 2268, 2276
Lsp1109I	GCAGC	5 cut(s)	700, 836, 1427, 1840, 1864
LweI	GCATC	6 cut(s)	296, 1402, 1553, 1774, 1840, 2053
MaeI	CTAG	6 cut(s)	66, 333, 456, 618, 1230, 1488
MaeII	ACGT	6 cut(s)	391, 1116, 1288, 1531, 1723, 2755
MbiI	CCGCTC	3 cut(s)	809, 2086, 2569
MfeI	CAATTG	1 cut(s)	1905
MflI	RGATCY	1 cut(s)	2326
MhlI	GDGCHC	7 cut(s)	612, 975, 1245, 1354, 1531, 2273, 2356
MlsI	TGGCCA	1 cut(s)	637
MluNI	TGGCCA	1 cut(s)	637
MlyI	GAGTC	9 cut(s)	349, 1262, 1300, 1378, 1447, 1454, 1485, 1755, 2606
MmeI	TCCRAC	1 cut(s)	1499
Mox20I	TGGCCA	1 cut(s)	637
Mph1103I	ATGCAT	1 cut(s)	1546
MroI	TCCGGA	1 cut(s)	940
MroXI	GAANNNNTTC	2 cut(s)	123, 1656
MscI	TGGCCA	1 cut(s)	637
MseI	TTAA	2 cut(s)	1536, 2076
MslI	CAYNNNNRTG	1 cut(s)	1499
Msp20I	TGGCCA	1 cut(s)	637
MspA1I	CMGCKG	1 cut(s)	1418
MspI	CCGG	3 cut(s)	305, 941, 1978
MspR9I	CCNGG	6 cut(s)	180, 422, 504, 819, 1238, 1978
MunI	CAATTG	1 cut(s)	1905
MvaI	CCWGG	5 cut(s)	180, 422, 504, 819, 1238
MvnI	CGCG	1 cut(s)	2013
MwoI	GCNNNNNNNGC	7 cut(s)	806, 1219, 1415, 1859, 1921, 1930, 2829
NciI	CCSGG	1 cut(s)	1978
NdeI	CATATG	1 cut(s)	825
NlaIII	CATG	9 cut(s)	379, 694, 986, 1048, 1186, 1345, 1498, 2678, 2732
NlaIV	GGNNCC	5 cut(s)	610, 879, 1055, 1235, 2615
NmuCI	GTSAC	5 cut(s)	182, 428, 521, 792, 2285
NsbI	TGCGCA	1 cut(s)	590
NsiI	ATGCAT	1 cut(s)	1546
NspI	RCATGY	2 cut(s)	986, 1345
NspV	TTCGAA	1 cut(s)	1566
PagI	TCATGA	3 cut(s)	690, 1182, 2674
PceI	AGGCCT	1 cut(s)	331
PciI	ACATGT	2 cut(s)	982, 1341
PcsI	WCGNNNNNNNCGW	4 cut(s)	881, 2373, 2752, 2781
PdmI	GAANNNNTTC	2 cut(s)	123, 1656
PfeI	GAWTC	7 cut(s)	119, 200, 538, 553, 1063, 2137, 2588
PflFI	GACNNNGTC	1 cut(s)	1444
PflMI	CCANNNNNTGG	1 cut(s)	818
PkrI	GCNGC	9 cut(s)	461, 715, 851, 1273, 1417, 1855, 1879, 2015, 2613
Ple19I	CGATCG	1 cut(s)	2779
PleI	GAGTC	9 cut(s)	349, 1261, 1300, 1377, 1447, 1453, 1485, 1754, 2605
PmaCI	CACGTG	1 cut(s)	1532
PmlI	CACGTG	1 cut(s)	1532
PpsI	GAGTC	9 cut(s)	349, 1261, 1300, 1377, 1447, 1453, 1485, 1754, 2605
Ppu21I	YACGTR	1 cut(s)	1532
PpuMI	RGGWCCY	2 cut(s)	1233, 2528
PscI	ACATGT	2 cut(s)	982, 1341
Psp124BI	GAGCTC	1 cut(s)	2273
Psp5II	RGGWCCY	2 cut(s)	1233, 2528
Psp6I	CCWGG	5 cut(s)	178, 420, 502, 817, 1236
PspCI	CACGTG	1 cut(s)	1532
PspEI	GGTNACC	2 cut(s)	521, 1972
PspGI	CCWGG	5 cut(s)	178, 420, 502, 817, 1236
PspN4I	GGNNCC	5 cut(s)	610, 879, 1055, 1235, 2615
PspOMI	GGGCCC	1 cut(s)	608
PspPI	GGNCC	6 cut(s)	608, 609, 878, 1054, 1233, 2528
PspPPI	RGGWCCY	2 cut(s)	1233, 2528
PsrI	GAACNNNNNNTAC	2 cut(s)	1793, 1825
PstNI	CAGNNNCTG	1 cut(s)	1853
PsuI	RGATCY	1 cut(s)	2326
PsyI	GACNNNGTC	1 cut(s)	1444
PvuI	CGATCG	1 cut(s)	2779
PvuII	CAGCTG	1 cut(s)	1418
RsaI	GTAC	3 cut(s)	746, 1610, 1668
RsaNI	GTAC	3 cut(s)	745, 1609, 1667
RseI	CAYNNNNRTG	1 cut(s)	1499
SacI	GAGCTC	1 cut(s)	2273
SaqAI	TTAA	2 cut(s)	1536, 2076
SatI	GCNGC	9 cut(s)	460, 714, 850, 1272, 1416, 1854, 1878, 2014, 2612
Sau96I	GGNCC	6 cut(s)	608, 609, 878, 1054, 1233, 2528
ScaI	AGTACT	1 cut(s)	1668
SchI	GAGTC	9 cut(s)	349, 1262, 1300, 1378, 1447, 1454, 1485, 1755, 2606
ScrFI	CCNGG	6 cut(s)	180, 422, 504, 819, 1238, 1978
SduI	GDGCHC	7 cut(s)	612, 975, 1245, 1354, 1531, 2273, 2356
SfaNI	GCATC	6 cut(s)	296, 1402, 1553, 1774, 1840, 2053
SfuI	TTCGAA	1 cut(s)	1566
SinI	GGWCC	3 cut(s)	878, 1233, 2528
SmiMI	CAYNNNNRTG	1 cut(s)	1499
SmlI	CTYRAG	3 cut(s)	1916, 2330, 2438
SmoI	CTYRAG	3 cut(s)	1916, 2330, 2438
SseBI	AGGCCT	1 cut(s)	331
SspMI	CTAG	6 cut(s)	66, 333, 456, 618, 1230, 1488
SstI	GAGCTC	1 cut(s)	2273
StuI	AGGCCT	1 cut(s)	331
StyD4I	CCNGG	6 cut(s)	178, 420, 502, 817, 1236, 1976
StyI	CCWWGG	2 cut(s)	291, 332
TaaI	ACNGT	7 cut(s)	434, 674, 792, 952, 1071, 1944, 2618
TaiI	ACGT	6 cut(s)	394, 1119, 1291, 1534, 1726, 2758
TaqII	GACCGA	1 cut(s)	1328
TatI	WGTACW	1 cut(s)	1666
TauI	GCSGC	4 cut(s)	462, 1274, 2016, 2614
TfiI	GAWTC	7 cut(s)	119, 200, 538, 553, 1063, 2137, 2588
Tru1I	TTAA	2 cut(s)	1536, 2076
Tru9I	TTAA	2 cut(s)	1536, 2076
TscAI	CASTG	8 cut(s)	288, 499, 955, 1074, 1224, 1531, 1863, 2031
TseFI	GTSAC	5 cut(s)	182, 428, 521, 792, 2285
TseI	GCWGC	5 cut(s)	713, 849, 1415, 1853, 1877
Tsp45I	GTSAC	5 cut(s)	182, 428, 521, 792, 2285
TspGWI	ACGGA	5 cut(s)	1457, 1953, 2339, 2382, 2662
TspRI	CASTG	8 cut(s)	288, 499, 955, 1074, 1224, 1531, 1863, 2031
Tth111I	GACNNNGTC	1 cut(s)	1444
Van91I	CCANNNNNTGG	1 cut(s)	818
VneI	GTGCAC	1 cut(s)	1527
VpaK11BI	GGWCC	3 cut(s)	878, 1233, 2528
XapI	RAATTY	6 cut(s)	110, 577, 910, 1562, 1897, 2034
XceI	RCATGY	2 cut(s)	986, 1345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2223
XmaJI	CCTAGG	1 cut(s)	332
XmnI	GAANNNNTTC	2 cut(s)	123, 1656
XspI	CTAG	6 cut(s)	66, 333, 456, 618, 1230, 1488
ZrmI	AGTACT	1 cut(s)	1668
Zsp2I	ATGCAT	1 cut(s)	1546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.