Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009276

Physical Location & Seq

Genomic Coordinates Forward (+)

63337416 .. 63345442

Gene Structure 8027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG406700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2649 bp

ATGAGCTCCTTCTTCATCACGCGGAAGAAGACCCCCTTCCAAAAGCACAGAGAGGAGGAAGAGGCCAAGAAAAAGAGAGCTGAGGATGAAACAGCTCGCTTATATGCGGAGTTCGTGGAGTCTTTTCAAGGGGATAATGCACCTGGCTCAAAGGCTTTTGTGCGAGGAGGGACCATCAATCCCAATGAAAGGGTTAAGGCTGATTCCCAAGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGGAGTAGGTATGTGCCATCTTTCTTACCACCTCCTTTGGCATCCAAAGGGAAAGAATCTGATAAGAAGAGGGAGGAGGAAAAGCCGAAGGAAAAAGAGAAGGGGAAGTCTCGAAACATAGATCACTTTATGGAGGAGCTGAAGCACGAGCAGGAATTGAGGGAGAGGCGAAATCAAGACCGTGAACATTGGCGTGATGGGCGGCCAAACGATAGTTCTGTGGCCTCTAGTCGTTTTGATGAAATGCCTGATGAATTTGATCCAAGTGGAAAACTTCTCGGATCATTTGATGATGGTGATCCACAAACTACTAATTTATATGTTGGAAATCTTTCACCAAAGGTTGATGAAAATTTTCTTTTACGAACTTTTGGAAGATTTGGGCCTATTGCCAGCGTGAAAATAATGTGGCCTAGGACTGAAGAGGAACGGAGGCGTCAAAGGAATTGTGGCTTTGTAGCTTTCATGAATAGAGCTGATGGACAGGCAGCAAAGGATGAAATGCAAGGGGTAGTTGTTTATGAGTATGAGTTGAAGATTGGATGGGGGAAGTCTGTAGCTCTCCCATCACAAGCGTTACCTGCACCCCCTCCAGGACATATGGCCATCAGGAGTAAGGAGGGTGCCACTGTAATTTTGTCTGGTCCATCAGGCCCACCTGTCACCTCTGTTCCTAGTCAGAATTCCGAACTGGTTCTTACCCCAAATGTTCCTGATATAATGGTTGTTCCACCGGAAGATGATCACCTTCGCCATGTGATTGATACAATGGCTTTGTATGTTCTGGATGGTGGATGTGCGTTTGAACAAGCTATTATGGAGAGAGGCAGAGGGAATCCTCTTTTCCATTTTTTGTTTGAACTTGGATCAAAAGAGCATACTTACTATGTTTGGAGGCTTTATTCATTTGCTCAGGGCGATACGCTGCAAAGGTGGCGAACTGAACCTTTCATTATGATTACTGGTAGTGGAAGATGGATCCCGCCATCTCTTCCAACATTAAAAAGCCCTGAGCATGAAAAAGAGTCTGGTAGCACTTATGCTGCAGGGAGAAGCAGGCGTGTAGAGTCAGAACGAACGCTCACTGATCCACAAAGGGATGAGTTTGAGGATATGTTGCGCGCATTAACATTAGAGAGGAGTCAGATAAAGGATGCTATGGGGTTTGCATTGGATAATGCTGATGCTGCTGGGGAGATAGTTGAGGTTCTGACAGAATCTTTGACTCTTAAGGAGACCCCTATCCCAACCAAAGTTGCTAGACTCATGCTTGTCTCTGATGTGCTTCACAATAGCAGCGCTCCAGTGAAAAATGCATCTGCATACCGCACCAAATTTGAAGCAACATTACCAGACATAATGGAGAGCTTTAATGATTTGTATCGTAGCATTACGGGAAGGATCACTGCTGAGGCCCTTAAGGAAAGAGTTCTGAAAGTATTGCAAGTATGGTCAGACTGGTTTCTTTTTTCAGATGCCTATGTCAATGGATTGCGGGCTACTTTTCTTCGGTCTGGGAACTCTGGTGTGGTCCCCTTCCACTCTGTATGTGGTGATGCACCTGATATAGAGAAAAAGACTACTGAAGATGCAGGTGATGCTGCTAAAACTAACCAAGATGCTGCTTTGGCTATGGGCAAAGGAGCAGCTATGAGGGAGTTGTTGAACCTTCCCATGGCTGAATTAGAAAGACGCTGCAGACATAATGGATTGTCTCTTGTTGGTGGTCGAGAAATGATGGTTGCACGATTGCTTAGTCTGGAAGAGGCAGAAAAACAGAGGGGCTATGAACTAGATGATGACTTGAAATATACACAGAACCATTCAAGTTCAGCTAGACATTCTAGTAGTCGAAAAGAAATGAATATTGAACCAGATCCGTTGGGACTGTCTGGATGGAATCGTTATGTAGAGGATGAGATACAGCCTCAACGGAAAGGGTCTTTATCAATGACCCAGACCCATACCAGTCCACAACCTGAACTAAAACCTTTAACCAAGAAAGAAAAAAGTGATCCTGTTCTAACGGCCTCTAAATGGGCCCGAGAGGATGATGACAGTGATGATGACCAAAAGCGAAGTGACAAGGGTCTCGGGTTAAGCTACTCATCTTCTGGAAGTGAAAATACTGGTGATGGTCCCAGTAAAGCTGATGAGATGGAGGTTGCTGCTGATGCAAGAATTCCAGCACTGCCTGATAGTGGATTAAGTGAGGAGCAGAGGCAAAAGTTGAGACGTTTGGAAGTTGCTCTGATAGAATATCGTGAATCTCTTGAGGAGCGGGGAATTAAAAGTCCTGAAGAAATTGAGAGGAAGGTTGCAATACATCGCAAACGACTTGAATCGGAGTACGGGTTATCTGATTCTAGCGAAGATGCTTCTGGGCGTAGTAAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Surp cwf21

Protein Analysis

882

Amino Acids

98.91

Weight (kDa)

5.66

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	189 - 261	7.9e-11	RNA recognition motif
Surp	PF01805	334 - 386	2.1e-15	Surp module
CID	PF04818	451 - 579	6.6e-08	CID domain
cwf21	PF08312	821 - 866	3.4e-08	cwf21 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10800 AT5G25060
fragaria_vesca	FvH4_2g41230 FvH4_2g41230 FvH4_2g41230
malus_domestica	MD08G1054700.v1.1 MD15G1042300.v1.1
prunus_persica	Prupe.1G395500_v2.0.a1 Prupe.1G395500_v2.0.a1 Prupe.1G395500_v2.0.a1 Prupe.1G395500_v2.0.a1
pyrus_communis	pycom08g04510 pycom15g03940
rosa_chinensis	RchiOBHm_Chr6g0299281
rosa_laevigata	RLG00000011446
rosa_roxburghii	Rroxscaffold_7G00168830
rosa_rugosa	Rorug06G0286800
rosa_samantha	Rh6AG398300 Rh6BG406700 Rh6CG412800 Rh6DG399500
rosa_wichuraiana	Rw6G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1832
Acc36I	ACCTGC	2 cut(s)	838, 1832
AccB1I	GGYRCC	1 cut(s)	872
AccBSI	CCGCTC	1 cut(s)	2530
AccII	CGCG	2 cut(s)	22, 1371
AciI	CCGC	7 cut(s)	22, 107, 451, 1232, 1576, 1744, 2530
AcoI	YGGCCR	2 cut(s)	452, 852
AcsI	RAATTY	5 cut(s)	503, 601, 931, 1583, 2430
AcuI	CTGAAG	4 cut(s)	410, 690, 1854, 2568
AcyI	GRCGYC	1 cut(s)	685
AfaI	GTAC	1 cut(s)	2600
AfeI	AGCGCT	1 cut(s)	1549
AfiI	CCNNNNNNNGG	7 cut(s)	189, 228, 248, 842, 1924, 2286, 2450
AflII	CTTAAG	2 cut(s)	1478, 1667
AjnI	CCWGG	2 cut(s)	142, 841
AjuI	GAANNNNNNNTTGG	2 cut(s)	448, 480
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	6 cut(s)	363, 1478, 1528, 1968, 2345, 2476
Ama87I	CYCGRG	2 cut(s)	2292, 2342
Aor51HI	AGCGCT	1 cut(s)	1549
ApaI	GGGCCC	1 cut(s)	2293
ApoI	RAATTY	5 cut(s)	503, 601, 931, 1583, 2430
ArsI	GACNNNNNNTTYG	2 cut(s)	1453, 1485
Asp700I	GAANNNNTTC	4 cut(s)	580, 603, 942, 1677
AspA2I	CCTAGG	1 cut(s)	662
AspLEI	GCGC	3 cut(s)	1371, 1373, 1550
AspS9I	GGNCC	9 cut(s)	171, 632, 893, 902, 1663, 1780, 2289, 2290, 2387
AsuHPI	GGTGA	8 cut(s)	224, 557, 576, 904, 986, 1814, 1856, 2393
AvaI	CYCGRG	2 cut(s)	2292, 2342
AvaII	GGWCC	4 cut(s)	171, 893, 1780, 2387
AvrII	CCTAGG	1 cut(s)	662
BaeGI	GKGCMC	1 cut(s)	2293
BalI	TGGCCA	1 cut(s)	854
BamHI	GGATCC	1 cut(s)	1227
BanI	GGYRCC	1 cut(s)	872
BanII	GRGCYC	2 cut(s)	8, 2293
BarI	GAAGNNNNNNTAC	4 cut(s)	1581, 1613, 2359, 2391
BauI	CACGAG	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	2 cut(s)	81, 1659
BceAI	ACGGC	1 cut(s)	2292
BciT130I	CCWGG	2 cut(s)	144, 843
BclI	TGATCA	1 cut(s)	991
BcoDI	GTCTC	6 cut(s)	363, 1478, 1528, 1968, 2345, 2476
BfaI	CTAG	8 cut(s)	477, 663, 924, 1509, 2042, 2085, 2094, 2616
BfmI	CTRYAG	3 cut(s)	804, 1293, 1945
BfoI	RGCGCY	1 cut(s)	1551
BfrI	CTTAAG	2 cut(s)	1478, 1667
BfuAI	ACCTGC	2 cut(s)	838, 1832
BlnI	CCTAGG	1 cut(s)	662
Bme1390I	CCNGG	2 cut(s)	144, 843
Bme18I	GGWCC	4 cut(s)	171, 893, 1780, 2387
BmeT110I	CYCGRG	2 cut(s)	2292, 2342
BmgT120I	GGNCC	9 cut(s)	171, 632, 893, 902, 1663, 1780, 2289, 2290, 2387
BmiI	GGNNCC	6 cut(s)	172, 874, 1229, 1782, 2291, 2389
BmrFI	CCNGG	2 cut(s)	144, 843
BmrI	ACTGGG	1 cut(s)	2385
BmuI	ACTGGG	1 cut(s)	2385
BoxI	GACNNNNGTC	1 cut(s)	2337
BpiI	GAAGAC	1 cut(s)	35
BpmI	CTGGAG	2 cut(s)	825, 1536
Bpu10I	CCTNAGC	4 cut(s)	81, 1161, 1260, 1659
BpuEI	CTTGAG	1 cut(s)	2543
BsaBI	GATNNNNATC	2 cut(s)	546, 1629
BsaHI	GRCGYC	1 cut(s)	685
BsaI	GGTCTC	2 cut(s)	1478, 2345
BsaJI	CCNNGG	3 cut(s)	208, 662, 1923
BsaWI	WCCGGW	1 cut(s)	982
BsaXI	ACNNNNNCTCC	2 cut(s)	2588, 2618
Bsc4I	CCNNNNNNNGG	7 cut(s)	189, 228, 248, 842, 1924, 2286, 2450
Bse1I	ACTGG	7 cut(s)	945, 1216, 1553, 1712, 2217, 2383, 2391
Bse8I	GATNNNNATC	2 cut(s)	546, 1629
BseBI	CCWGG	2 cut(s)	144, 843
BseDI	CCNNGG	3 cut(s)	208, 662, 1923
BseJI	GATNNNNATC	2 cut(s)	546, 1629
BseLI	CCNNNNNNNGG	7 cut(s)	189, 228, 248, 842, 1924, 2286, 2450
BseMII	CTCAG	4 cut(s)	72, 1175, 1251, 1650
BseNI	ACTGG	7 cut(s)	945, 1216, 1553, 1712, 2217, 2383, 2391
BsePI	GCGCGC	1 cut(s)	1369
BseRI	GAGGAG	7 cut(s)	68, 180, 338, 398, 1402, 2477, 2540
BseSI	GKGCMC	1 cut(s)	2293
BseYI	CCCAGC	1 cut(s)	1439
BsgI	GTGCAG	1 cut(s)	816
Bsh1236I	CGCG	2 cut(s)	22, 1371
BshNI	GGYRCC	1 cut(s)	872
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	2292, 2342
BsiSI	CCGG	1 cut(s)	983
BslFI	GGGAC	4 cut(s)	184, 1766, 2148, 2373
BslI	CCNNNNNNNGG	7 cut(s)	189, 228, 248, 842, 1924, 2286, 2450
BsmAI	GTCTC	6 cut(s)	363, 1478, 1528, 1968, 2345, 2476
BsmBI	CGTCTC	1 cut(s)	2476
BsmFI	GGGAC	4 cut(s)	184, 1766, 2148, 2373
Bso31I	GGTCTC	2 cut(s)	1478, 2345
BsoBI	CYCGRG	2 cut(s)	2292, 2342
Bsp120I	GGGCCC	1 cut(s)	2289
Bsp1286I	GDGCHC	2 cut(s)	8, 2293
Bsp19I	CCATGG	1 cut(s)	1923
BspACI	CCGC	7 cut(s)	22, 107, 451, 1232, 1576, 1744, 2530
BspCNI	CTCAG	4 cut(s)	73, 1174, 1252, 1651
BspFNI	CGCG	2 cut(s)	22, 1371
BspHI	TCATGA	1 cut(s)	714
BspLI	GGNNCC	6 cut(s)	172, 874, 1229, 1782, 2291, 2389
BspMAI	CTGCAG	2 cut(s)	1297, 1949
BspMI	ACCTGC	2 cut(s)	838, 1832
BspT107I	GGYRCC	1 cut(s)	872
BspTI	CTTAAG	2 cut(s)	1478, 1667
BspTNI	GGTCTC	2 cut(s)	1478, 2345
BsrBI	CCGCTC	1 cut(s)	2530
BsrI	ACTGG	7 cut(s)	945, 1216, 1553, 1712, 2217, 2383, 2391
BssECI	CCNNGG	3 cut(s)	208, 662, 1923
BssHII	GCGCGC	1 cut(s)	1369
BssNI	GRCGYC	1 cut(s)	685
BssSI	CACGAG	1 cut(s)	395
BssT1I	CCWWGG	3 cut(s)	208, 662, 1923
Bst2BI	CACGAG	1 cut(s)	395
Bst2UI	CCWGG	2 cut(s)	144, 843
Bst4CI	ACNGT	4 cut(s)	431, 880, 2139, 2309
Bst6I	CTCTTC	5 cut(s)	54, 311, 666, 1245, 2007
BstACI	GRCGYC	1 cut(s)	685
BstAFI	CTTAAG	2 cut(s)	1478, 1667
BstAPI	GCANNNNNTGC	1 cut(s)	1847
BstC8I	GCNNGC	5 cut(s)	97, 643, 1307, 1371, 1746
BstDEI	CTNAG	5 cut(s)	81, 1161, 1260, 1659, 2003
BstDSI	CCRYGG	1 cut(s)	1923
BstFNI	CGCG	2 cut(s)	22, 1371
BstH2I	RGCGCY	1 cut(s)	1551
BstHHI	GCGC	3 cut(s)	1371, 1373, 1550
BstMAI	GTCTC	6 cut(s)	363, 1478, 1528, 1968, 2345, 2476
BstMWI	GCNNNNNNNGC	7 cut(s)	448, 830, 1183, 1436, 1847, 1877, 2423
BstNI	CCWGG	2 cut(s)	144, 843
BstPAI	GACNNNNGTC	1 cut(s)	2337
BstSCI	CCNGG	2 cut(s)	142, 841
BstSFI	CTRYAG	3 cut(s)	804, 1293, 1945
BstSLI	GKGCMC	1 cut(s)	2293
BstUI	CGCG	2 cut(s)	22, 1371
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	2 cut(s)	1227, 2125
BstYI	RGATCY	2 cut(s)	1227, 2125
BtgI	CCRYGG	1 cut(s)	1923
BtgZI	GCGATG	1 cut(s)	2561
BtsI	GCAGTG	2 cut(s)	1653, 2438
BtsIMutI	CAGTG	6 cut(s)	876, 1332, 1560, 1653, 2314, 2438
BveI	ACCTGC	2 cut(s)	838, 1832
Cac8I	GCNNGC	5 cut(s)	97, 643, 1307, 1371, 1746
CciI	TCATGA	1 cut(s)	714
CfoI	GCGC	3 cut(s)	1371, 1373, 1550
Cfr13I	GGNCC	9 cut(s)	171, 632, 893, 902, 1663, 1780, 2289, 2290, 2387
CseI	GACGC	2 cut(s)	674, 1950
Csp6I	GTAC	1 cut(s)	2599
CspCI	CAANNNNNGTGG	2 cut(s)	267, 302
CviAII	CATG	5 cut(s)	715, 1004, 1265, 1516, 1924
CviQI	GTAC	1 cut(s)	2599
DdeI	CTNAG	5 cut(s)	81, 1161, 1260, 1659, 2003
EaeI	YGGCCR	2 cut(s)	452, 852
Eam1104I	CTCTTC	5 cut(s)	54, 311, 666, 1245, 2007
EarI	CTCTTC	5 cut(s)	54, 311, 666, 1245, 2007
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	3 cut(s)	208, 662, 1923
Eco24I	GRGCYC	2 cut(s)	8, 2293
Eco31I	GGTCTC	2 cut(s)	1478, 2345
Eco47I	GGWCC	4 cut(s)	171, 893, 1780, 2387
Eco47III	AGCGCT	1 cut(s)	1549
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	4 cut(s)	410, 690, 1854, 2568
Eco88I	CYCGRG	2 cut(s)	2292, 2342
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	1663
EcoRI	GAATTC	2 cut(s)	931, 2430
EcoRII	CCWGG	2 cut(s)	142, 841
EcoT14I	CCWWGG	3 cut(s)	208, 662, 1923
EcoT22I	ATGCAT	1 cut(s)	1567
EcoT38I	GRGCYC	2 cut(s)	8, 2293
ErhI	CCWWGG	3 cut(s)	208, 662, 1923
Esp3I	CGTCTC	1 cut(s)	2476
FaeI	CATG	5 cut(s)	718, 1007, 1268, 1519, 1927
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	4 cut(s)	184, 1766, 2148, 2373
FatI	CATG	5 cut(s)	714, 1003, 1264, 1515, 1923
FauI	CCCGC	3 cut(s)	1239, 1737, 2523
FauNDI	CATATG	1 cut(s)	849
FbaI	TGATCA	1 cut(s)	991
FriOI	GRGCYC	2 cut(s)	8, 2293
FspBI	CTAG	8 cut(s)	477, 663, 924, 1509, 2042, 2085, 2094, 2616
GlaI	GCGC	3 cut(s)	1370, 1372, 1549
GsaI	CCCAGC	1 cut(s)	1443
GsuI	CTGGAG	2 cut(s)	825, 1536
HaeII	RGCGCY	1 cut(s)	1551
HapII	CCGG	1 cut(s)	983
HgaI	GACGC	2 cut(s)	674, 1950
HhaI	GCGC	3 cut(s)	1371, 1373, 1550
Hin1I	GRCGYC	1 cut(s)	685
Hin1II	CATG	5 cut(s)	718, 1007, 1268, 1519, 1927
Hin6I	GCGC	3 cut(s)	1369, 1371, 1548
HinP1I	GCGC	3 cut(s)	1369, 1371, 1548
HpaII	CCGG	1 cut(s)	983
HphI	GGTGA	8 cut(s)	224, 557, 576, 904, 986, 1814, 1856, 2393
Hpy166II	GTNNAC	2 cut(s)	434, 2222
Hpy8I	GTNNAC	2 cut(s)	434, 2222
HpyCH4III	ACNGT	4 cut(s)	431, 880, 2139, 2309
HpyCH4IV	ACGT	1 cut(s)	2485
HpyF10VI	GCNNNNNNNGC	7 cut(s)	448, 830, 1183, 1436, 1847, 1877, 2423
HpyF3I	CTNAG	5 cut(s)	81, 1161, 1260, 1659, 2003
HpySE526I	ACGT	1 cut(s)	2485
Hsp92I	GRCGYC	1 cut(s)	685
Hsp92II	CATG	5 cut(s)	718, 1007, 1268, 1519, 1927
HspAI	GCGC	3 cut(s)	1369, 1371, 1548
Ksp22I	TGATCA	1 cut(s)	991
LmnI	GCTCC	6 cut(s)	11, 385, 1555, 1892, 2464, 2527
MaeI	CTAG	8 cut(s)	477, 663, 924, 1509, 2042, 2085, 2094, 2616
MaeII	ACGT	1 cut(s)	2485
MaeIII	GTNAC	3 cut(s)	825, 910, 2330
MbiI	CCGCTC	1 cut(s)	2530
MflI	RGATCY	2 cut(s)	1227, 2125
MhlI	GDGCHC	2 cut(s)	8, 2293
MlsI	TGGCCA	1 cut(s)	854
MluNI	TGGCCA	1 cut(s)	854
MlyI	GAGTC	6 cut(s)	128, 1283, 1325, 1399, 1468, 1506
MmeI	TCCRAC	2 cut(s)	553, 1268
Mox20I	TGGCCA	1 cut(s)	854
Mph1103I	ATGCAT	1 cut(s)	1567
MroXI	GAANNNNTTC	4 cut(s)	580, 603, 942, 1677
MscI	TGGCCA	1 cut(s)	854
MslI	CAYNNNNRTG	1 cut(s)	441
Msp20I	TGGCCA	1 cut(s)	854
MspCI	CTTAAG	2 cut(s)	1478, 1667
MspI	CCGG	1 cut(s)	983
MspR9I	CCNGG	2 cut(s)	144, 843
MvaI	CCWGG	2 cut(s)	144, 843
MvnI	CGCG	2 cut(s)	22, 1371
MwoI	GCNNNNNNNGC	7 cut(s)	448, 830, 1183, 1436, 1847, 1877, 2423
NcoI	CCATGG	1 cut(s)	1923
NdeI	CATATG	1 cut(s)	849
NlaIII	CATG	5 cut(s)	718, 1007, 1268, 1519, 1927
NlaIV	GGNNCC	6 cut(s)	172, 874, 1229, 1782, 2291, 2389
NmuCI	GTSAC	2 cut(s)	910, 2330
NsiI	ATGCAT	1 cut(s)	1567
PagI	TCATGA	1 cut(s)	714
PaqCI	CACCTGC	1 cut(s)	1832
PauI	GCGCGC	1 cut(s)	1369
PdmI	GAANNNNTTC	4 cut(s)	580, 603, 942, 1677
PfeI	GAWTC	8 cut(s)	203, 305, 1084, 1466, 2149, 2516, 2591, 2612
PfoI	TCCNGGA	1 cut(s)	841
PleI	GAGTC	6 cut(s)	127, 1282, 1324, 1398, 1468, 1506
PpsI	GAGTC	6 cut(s)	127, 1282, 1324, 1398, 1468, 1506
PshAI	GACNNNNGTC	1 cut(s)	2337
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	142, 841
PspFI	CCCAGC	1 cut(s)	1439
PspGI	CCWGG	2 cut(s)	142, 841
PspN4I	GGNNCC	6 cut(s)	172, 874, 1229, 1782, 2291, 2389
PspOMI	GGGCCC	1 cut(s)	2289
PspPI	GGNCC	9 cut(s)	171, 632, 893, 902, 1663, 1780, 2289, 2290, 2387
PstI	CTGCAG	2 cut(s)	1297, 1949
PsuI	RGATCY	2 cut(s)	1227, 2125
PteI	GCGCGC	1 cut(s)	1369
RsaI	GTAC	1 cut(s)	2600
RsaNI	GTAC	1 cut(s)	2599
RseI	CAYNNNNRTG	1 cut(s)	441
SacI	GAGCTC	1 cut(s)	8
Sau96I	GGNCC	9 cut(s)	171, 632, 893, 902, 1663, 1780, 2289, 2290, 2387
SchI	GAGTC	6 cut(s)	128, 1283, 1325, 1399, 1468, 1506
ScrFI	CCNGG	2 cut(s)	144, 843
SduI	GDGCHC	2 cut(s)	8, 2293
SfcI	CTRYAG	3 cut(s)	804, 1293, 1945
SinI	GGWCC	4 cut(s)	171, 893, 1780, 2387
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	3 cut(s)	1478, 1667, 2522
SmoI	CTYRAG	3 cut(s)	1478, 1667, 2522
SsiI	CCGC	7 cut(s)	22, 107, 451, 1232, 1576, 1744, 2530
SspI	AATATT	1 cut(s)	2116
SspMI	CTAG	8 cut(s)	477, 663, 924, 1509, 2042, 2085, 2094, 2616
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	142, 841
StyI	CCWWGG	3 cut(s)	208, 662, 1923
TaaI	ACNGT	4 cut(s)	431, 880, 2139, 2309
TaiI	ACGT	1 cut(s)	2488
TaqI	TCGA	3 cut(s)	361, 1978, 2101
TaqII	GACCGA	1 cut(s)	1749
TauI	GCSGC	1 cut(s)	454
TfiI	GAWTC	8 cut(s)	203, 305, 1084, 1466, 2149, 2516, 2591, 2612
TscAI	CASTG	6 cut(s)	883, 1339, 1560, 1660, 2314, 2445
TseFI	GTSAC	2 cut(s)	910, 2330
Tsp45I	GTSAC	2 cut(s)	910, 2330
TspGWI	ACGGA	3 cut(s)	694, 2118, 2197
TspRI	CASTG	6 cut(s)	883, 1339, 1560, 1660, 2314, 2445
Vha464I	CTTAAG	2 cut(s)	1478, 1667
VpaK11BI	GGWCC	4 cut(s)	171, 893, 1780, 2387
XapI	RAATTY	5 cut(s)	503, 601, 931, 1583, 2430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1796
XmaJI	CCTAGG	1 cut(s)	662
XmnI	GAANNNNTTC	4 cut(s)	580, 603, 942, 1677
XspI	CTAG	8 cut(s)	477, 663, 924, 1509, 2042, 2085, 2094, 2616
Zsp2I	ATGCAT	1 cut(s)	1567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.