Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009276

Physical Location & Seq

Genomic Coordinates Forward (+)

2951690 .. 2958908

Gene Structure 7219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1042300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2961 bp

ATGAGTTCGTTCTCGATTACCCGGAAGAAGACTCCGTTCCAGAAGCACAGGGAGGAGGAAGAGGCAAAGAAAAAGAGAGCGGAGGATGAAACAGCTCGGTTATATGCGGAGTTTGTGGAGTCATTTCAAGGGGATAACGCACCTGGGTCGAAGGCCTTTGTTAGAGGAGGAACAATCAATCCCAATGAGAAGGTGAAGCCGGATTCCAAAGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGGAGTAGGTATGTTCCGTCTTTCTTACCACCACCTTTGGCATCCAAAGGGAAAGAACCTGAGAAGAGGGAGGAGGAGAGGCTGAGGGAGAAAGAAAAGGGAAAGTCTCGAAACATCGATCATTTTATGGAAGAGTTGAAGCGTGAGCAGGAGATGAGGGAGAGGCGAAATCAAGAGCGTGAAAATTCCCATGATGGGCGGCAGATGGAGAATTCTACACCATCCAGTCGCTTTGATGAACTTCCTGATGAATTTGATCCAAGTGGAAAGCTTCTTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTATACGTTGGAAATCTGTCGCCAAAGGTTGATGAAAATTTTCTTTTGCGAACTTTTGGAAGATTTGGGCCTATTGCTAGTGTGAAAATAATGTGGCCTAGGACAGAAGAGGAGCGAAGGCGCCAAAGAAATTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGGCAGGCGGCAAAGGATGAAATGCAAGGAGTGGTGGTTTATGAGTATGAGTTGAAGATTGGGTGGGGTAAGTCTGTTGCTCTACCATCACAAGCTCTACCTGCTCCCCCTCCAGGACATATGGCCATCAGGAGTAAGGAGGGTGCCACTGTAATCTTGTCTGGTCCATCAGGTCCGTCAGGCCCACCTGTCACTTCTGTTCCTAGTCAGAATTCTGAACTGGTTCTTACTCCAAATGTTCCTGATATAACGGTTGTTCCACCCGAGGATGATCACCTCCGCCACGTGATTGATACAATGGCTTTGTATGTTCTGGATGGTGGATGTGCCTTTGAACAAGCTATTATGGAGAGAGGTAGAGGGAATCCTCTTTTCAACTTCTTGTTTGAGCTTGGCTCAAAAGAGCATACTTACTATGTTTGGAGGCTCTATTCGTTTGCTCAGGGTGATACTCTACAAAGGTGGCGAACAGAACCTTTCATTATGATTACTGGTAGTGGAAGATGGATTCCACCACCTCTGCCAACAGTAAAAAGCCCAGAACATGAAAAAGAGGCGGGTACAACATATGCTGCAGGAAGAAGCAGGCGTGTAGAGCCAGAAAGAACACTTACTGATTCACAGAGGGATGAATTTGAAGATATGTTACGTGCATTAACGTTAGAGAGGAGTCAGATAAAGGATGCTATGGGGTTTGCATTGGACAATGCTGATGCAGCTGGGGAGATAGTTGAAGTTCTTACAGAGTCTTTGACTCTTAAGGAGACCCCTATCCCAACCAAAGTAGCAAGACTTATGCTTGTTTCTGATGTGCTTCACAATAGCAGTGCTCCTGTAAAGAATGCATCTGCATACCGCACCAAATTTGAAGCTTCATTACCAGACATAATGGAGAGCTTTAATGATTTGTATCGTAGTATAACAGGAAGGATTACTGCTGAGGCCCTTAAGGAAAGAGTTCTGAAAGTATTGCAAGTATGGTCGGACTGGTTTCTTTTTTCAGATGCTTACGTGAATGGATTGCGGGCTACTTTTCTTCGGTCTGGGAACTCTGGTGTGGTCCCCTTTCACTCCATATCTGGCGATGAACCTGAAATAGACAAAAAAACCACTTCCGAAGATACAGGTGATGCTAGTAAAACCAATCAAGATGCTGCTCTGGCAATGGGCAAAGGAGCAGCTATGAGGGAGTTATTGAGTCTTCCCCTAGCTGAGTTGGAAAGACGCTGCAGACATAATGGATTGTCTCTTGTTGGTGGTCGCAAAACAATGGTTGCACGATTGCTTAGTCTTGAAGAAGCAGAAAAACAAAGGGGCTATGAACTAGATGATGACTTGAAATATGCTCAGAAGCATTCAAGTTCAGCCAGAAATTCAAGTAGCCGCAGAGAAACAAATATTGAACCAGACCCAGTAGAAATGTCTGGATGGAATCGTTATGCAGAGGATGAGAGACAGTCTCAAGCGAAGGGGTCTCTACCCTTGGCCCAGACCTTTCCGATTCCGCAGCCTGAACTAAAAGCTTTTACCAAGAAAGAGAAGAGTGATCCTATTCTACCCGCTTCTAAATGGGCGCGAGAGGATGATGATAGCGATGACGAACAAAAGCAGAGTGCTCGGGGTCTTGGTTTAAGCTACTCATCTTCTGGAAGTGAAAATGCTGGTGATGGTCCCAGTAAAGCTGATGAGATGGAGGTTGCAAACGATGCAAGCATTCCAGCACAACCTGACAGTGGAATTAGTGAGGAGCAGAGGCAAAAGTTGAGACGTTTGGAAGTTGCTTTGATAGAATATCGTGAATCTCTTGAGGAGCGAGGAATAAAAAATCCCGAAGAAATTGAAAGGAAGGTTGTATTGCATCGGAAACGGCTGGAGTCAGAATATGGGTTATTAGATTCCAGCGAAGATGCTTCTGGGAGTAAGAGAACATCCTCAGAGAGGGACAGACGGGATGCCGATACTCGTGATGCTTCAAGAAAGCGGCACCACAGTGGAAGCCAAGGTGATAGTCCAGTACAAAGATCATCAAACAGAGATCGGGAAAGGGAACATGATTTAGACAGAGACCGGGAAAGGCAGCGGGACAGAGACAGAGATAGGCCTCGTGATTTCGAAGGTGATAGGGGGAGAGGCCGGGATCGGGATCGTGAGAAAAGTGGAAGTAGAGACAGGGATGACCATGAGAGAGAGAGAAGCAGAGAAAGAGACAGGGACCGGAGGAGAAGAATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Surp cwf21

Protein Analysis

987

Amino Acids

111.63

Weight (kDa)

6.05

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	188 - 260	9.1e-11	RNA recognition motif
Surp	PF01805	336 - 388	7.5e-16	Surp module
CID	PF04818	453 - 581	8.5e-08	CID domain
cwf21	PF08312	825 - 869	1.3e-06	cwf21 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10800 AT5G25060
fragaria_vesca	FvH4_2g41230 FvH4_2g41230 FvH4_2g41230
malus_domestica	MD08G1054700.v1.1 MD15G1042300.v1.1
prunus_persica	Prupe.1G395500_v2.0.a1 Prupe.1G395500_v2.0.a1 Prupe.1G395500_v2.0.a1 Prupe.1G395500_v2.0.a1
pyrus_communis	pycom08g04510 pycom15g03940
rosa_chinensis	RchiOBHm_Chr6g0299281
rosa_laevigata	RLG00000011446
rosa_roxburghii	Rroxscaffold_7G00168830
rosa_rugosa	Rorug06G0286800
rosa_samantha	Rh6AG398300 Rh6BG406700 Rh6CG412800 Rh6DG399500
rosa_wichuraiana	Rw6G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	835
AccB1I	GGYRCC	3 cut(s)	681, 869, 2709
AccBSI	CCGCTC	1 cut(s)	80
AccII	CGCG	1 cut(s)	2302
AclI	AACGTT	1 cut(s)	1385
AclWI	GGATC	6 cut(s)	500, 535, 539, 2267, 2871, 2877
AcoI	YGGCCR	1 cut(s)	849
AcsI	RAATTY	8 cut(s)	433, 460, 500, 598, 937, 1358, 1589, 2098
AcvI	CACGTG	1 cut(s)	1012
AcyI	GRCGYC	1 cut(s)	682
AfaI	GTAC	2 cut(s)	1288, 2742
AfiI	CCNNNNNNNGG	7 cut(s)	228, 248, 444, 839, 2459, 2664, 2866
AflII	CTTAAG	2 cut(s)	1484, 1673
AjnI	CCWGG	2 cut(s)	142, 838
AleI	CACNNNNGTG	1 cut(s)	2715
AloI	GAACNNNNNNTCC	2 cut(s)	163, 195
Alw21I	GWGCWC	2 cut(s)	1558, 2344
AlwI	GGATC	6 cut(s)	500, 535, 539, 2267, 2871, 2877
Ama87I	CYCGRG	2 cut(s)	989, 2343
AoxI	GGCC	9 cut(s)	153, 629, 656, 849, 907, 1668, 2211, 2825, 2857
ApeKI	GCWGC	7 cut(s)	1298, 1442, 1880, 1904, 1953, 2233, 2803
ApoI	RAATTY	8 cut(s)	433, 460, 500, 598, 937, 1358, 1589, 2098
Asp700I	GAANNNNTTC	3 cut(s)	600, 948, 1683
AspA2I	CCTAGG	1 cut(s)	659
AspLEI	GCGC	2 cut(s)	684, 2302
AspS9I	GGNCC	9 cut(s)	629, 890, 899, 908, 1669, 1786, 2212, 2396, 2938
AsuC2I	CCSGG	3 cut(s)	22, 2795, 2861
AsuHPI	GGTGA	9 cut(s)	205, 224, 554, 992, 1184, 1865, 2402, 2741, 2855
AsuII	TTCGAA	1 cut(s)	2838
AvaI	CYCGRG	2 cut(s)	989, 2343
AvaII	GGWCC	5 cut(s)	890, 899, 1786, 2396, 2938
AvrII	CCTAGG	1 cut(s)	659
BalI	TGGCCA	1 cut(s)	851
BanI	GGYRCC	3 cut(s)	681, 869, 2709
BarI	GAAGNNNNNNTAC	4 cut(s)	1356, 1388, 1587, 1619
BauI	CACGAG	2 cut(s)	2688, 2829
BbrPI	CACGTG	1 cut(s)	1012
BbsI	GAAGAC	2 cut(s)	35, 1919
Bbv12I	GWGCWC	2 cut(s)	1558, 2344
BbvCI	CCTCAGC	2 cut(s)	332, 1665
BbvI	GCAGC	7 cut(s)	1285, 1454, 1867, 1916, 1940, 2245, 2815
BceAI	ACGGC	1 cut(s)	2609
BcgI	CGANNNNNNTGC	4 cut(s)	129, 163, 2324, 2358
BciT130I	CCWGG	2 cut(s)	144, 840
BclI	TGATCA	1 cut(s)	997
BcnI	CCSGG	3 cut(s)	22, 2795, 2861
BfaI	CTAG	6 cut(s)	639, 660, 930, 1860, 1934, 2051
BfmI	CTRYAG	2 cut(s)	1299, 1954
BfoI	RGCGCY	1 cut(s)	685
BfrI	CTTAAG	2 cut(s)	1484, 1673
BfuAI	ACCTGC	1 cut(s)	835
BlnI	CCTAGG	1 cut(s)	659
Bme1390I	CCNGG	5 cut(s)	22, 144, 840, 2795, 2861
Bme18I	GGWCC	5 cut(s)	890, 899, 1786, 2396, 2938
BmeT110I	CYCGRG	2 cut(s)	989, 2343
BmgT120I	GGNCC	9 cut(s)	629, 890, 899, 908, 1669, 1786, 2212, 2396, 2938
BmiI	GGNNCC	6 cut(s)	683, 871, 1788, 2398, 2711, 2939
BmrFI	CCNGG	5 cut(s)	22, 144, 840, 2795, 2861
BmrI	ACTGGG	2 cut(s)	2132, 2394
BmuI	ACTGGG	2 cut(s)	2132, 2394
BpiI	GAAGAC	2 cut(s)	35, 1919
BplI	GAGNNNNNCTC	4 cut(s)	1106, 1138, 2170, 2202
BpmI	CTGGAG	2 cut(s)	822, 2618
Bpu10I	CCTNAGC	3 cut(s)	332, 1167, 1665
Bpu14I	TTCGAA	1 cut(s)	2838
BpuEI	CTTGAG	2 cut(s)	2172, 2552
BpuMI	CCSGG	3 cut(s)	22, 2795, 2861
Bsa29I	ATCGAT	1 cut(s)	366
BsaAI	YACGTR	3 cut(s)	1012, 1376, 1738
BsaBI	GATNNNNATC	3 cut(s)	543, 1635, 2868
BsaHI	GRCGYC	1 cut(s)	682
BsaI	GGTCTC	3 cut(s)	1484, 2205, 2784
BsaJI	CCNNGG	5 cut(s)	143, 659, 990, 2208, 2725
BsaWI	WCCGGW	1 cut(s)	2940
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bsc4I	CCNNNNNNNGG	7 cut(s)	228, 248, 444, 839, 2459, 2664, 2866
Bse1I	ACTGG	7 cut(s)	474, 951, 1222, 1718, 2138, 2400, 2738
Bse3DI	GCAATG	1 cut(s)	1896
Bse8I	GATNNNNATC	3 cut(s)	543, 1635, 2868
BseBI	CCWGG	2 cut(s)	144, 840
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	5 cut(s)	143, 659, 990, 2208, 2725
BseJI	GATNNNNATC	3 cut(s)	543, 1635, 2868
BseLI	CCNNNNNNNGG	7 cut(s)	228, 248, 444, 839, 2459, 2664, 2866
BseMI	GCAATG	1 cut(s)	1896
BseMII	CTCAG	7 cut(s)	300, 323, 1181, 1656, 1929, 2087, 2673
BseNI	ACTGG	7 cut(s)	474, 951, 1222, 1718, 2138, 2400, 2738
BseRI	GAGGAG	9 cut(s)	68, 180, 335, 338, 686, 1408, 2486, 2549, 2959
BseXI	GCAGC	7 cut(s)	1285, 1454, 1867, 1916, 1940, 2245, 2815
BseYI	CCCAGC	1 cut(s)	1445
Bsh1236I	CGCG	1 cut(s)	2302
BshFI	GGCC	9 cut(s)	155, 631, 658, 851, 909, 1670, 2213, 2827, 2859
BshNI	GGYRCC	3 cut(s)	681, 869, 2709
BshVI	ATCGAT	1 cut(s)	366
BsiHKAI	GWGCWC	2 cut(s)	1558, 2344
BsiHKCI	CYCGRG	2 cut(s)	989, 2343
BsiSI	CCGG	5 cut(s)	22, 200, 2794, 2860, 2941
BslFI	GGGAC	5 cut(s)	1772, 2382, 2681, 2822, 2951
BslI	CCNNNNNNNGG	7 cut(s)	228, 248, 444, 839, 2459, 2664, 2866
BsmBI	CGTCTC	1 cut(s)	2485
BsmFI	GGGAC	5 cut(s)	1772, 2382, 2681, 2822, 2951
BsmI	GAATGC	3 cut(s)	1573, 2080, 2439
BsnI	GGCC	9 cut(s)	155, 631, 658, 851, 909, 1670, 2213, 2827, 2859
Bso31I	GGTCTC	3 cut(s)	1484, 2205, 2784
BsoBI	CYCGRG	2 cut(s)	989, 2343
Bsp119I	TTCGAA	1 cut(s)	2838
Bsp1286I	GDGCHC	2 cut(s)	1558, 2344
BspANI	GGCC	9 cut(s)	155, 631, 658, 851, 909, 1670, 2213, 2827, 2859
BspCNI	CTCAG	7 cut(s)	301, 324, 1180, 1657, 1930, 2086, 2672
BspDI	ATCGAT	1 cut(s)	366
BspFNI	CGCG	1 cut(s)	2302
BspHI	TCATGA	1 cut(s)	711
BspLI	GGNNCC	6 cut(s)	683, 871, 1788, 2398, 2711, 2939
BspMAI	CTGCAG	2 cut(s)	1303, 1958
BspMI	ACCTGC	1 cut(s)	835
BspPI	GGATC	6 cut(s)	500, 535, 539, 2267, 2871, 2877
BspT104I	TTCGAA	1 cut(s)	2838
BspT107I	GGYRCC	3 cut(s)	681, 869, 2709
BspTI	CTTAAG	2 cut(s)	1484, 1673
BspTNI	GGTCTC	3 cut(s)	1484, 2205, 2784
BsrBI	CCGCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	1896
BsrI	ACTGG	7 cut(s)	474, 951, 1222, 1718, 2138, 2400, 2738
BssECI	CCNNGG	5 cut(s)	143, 659, 990, 2208, 2725
BssNI	GRCGYC	1 cut(s)	682
BssSI	CACGAG	2 cut(s)	2688, 2829
BssT1I	CCWWGG	3 cut(s)	659, 2208, 2725
Bst2BI	CACGAG	2 cut(s)	2688, 2829
Bst2UI	CCWGG	2 cut(s)	144, 840
Bst4CI	ACNGT	6 cut(s)	877, 979, 1255, 2184, 2459, 2717
Bst6I	CTCTTC	5 cut(s)	54, 308, 375, 663, 2261
BstACI	GRCGYC	1 cut(s)	682
BstAFI	CTTAAG	2 cut(s)	1484, 1673
BstAPI	GCANNNNNTGC	1 cut(s)	2432
BstBAI	YACGTR	3 cut(s)	1012, 1376, 1738
BstBI	TTCGAA	1 cut(s)	2838
BstC8I	GCNNGC	4 cut(s)	732, 1313, 1752, 2437
BstDEI	CTNAG	8 cut(s)	309, 332, 1167, 1665, 1938, 2012, 2073, 2659
BstENI	CCTNNNNNAGG	1 cut(s)	2662
BstFNI	CGCG	1 cut(s)	2302
BstH2I	RGCGCY	1 cut(s)	685
BstHHI	GCGC	2 cut(s)	684, 2302
BstMWI	GCNNNNNNNGC	5 cut(s)	827, 1321, 1442, 1886, 2432
BstNI	CCWGG	2 cut(s)	144, 840
BstSCI	CCNGG	5 cut(s)	20, 142, 838, 2793, 2859
BstSFI	CTRYAG	2 cut(s)	1299, 1954
BstUI	CGCG	1 cut(s)	2302
BstV1I	GCAGC	7 cut(s)	1285, 1454, 1867, 1916, 1940, 2245, 2815
BstV2I	GAAGAC	2 cut(s)	35, 1919
Bsu15I	ATCGAT	1 cut(s)	366
BsuRI	GGCC	9 cut(s)	155, 631, 658, 851, 909, 1670, 2213, 2827, 2859
BsuTUI	ATCGAT	1 cut(s)	366
BtgZI	GCGATG	2 cut(s)	1824, 2334
BtsI	GCAGTG	1 cut(s)	1558
BtsIMutI	CAGTG	4 cut(s)	873, 1558, 2464, 2722
BveI	ACCTGC	1 cut(s)	835
Cac8I	GCNNGC	4 cut(s)	732, 1313, 1752, 2437
CciI	TCATGA	1 cut(s)	711
CfoI	GCGC	2 cut(s)	684, 2302
Cfr13I	GGNCC	9 cut(s)	629, 890, 899, 908, 1669, 1786, 2212, 2396, 2938
ClaI	ATCGAT	1 cut(s)	366
CseI	GACGC	1 cut(s)	1959
Csp6I	GTAC	2 cut(s)	1287, 2741
CspCI	CAANNNNNGTGG	2 cut(s)	267, 302
CviAII	CATG	5 cut(s)	440, 712, 1271, 2777, 2906
CviQI	GTAC	2 cut(s)	1287, 2741
DdeI	CTNAG	8 cut(s)	309, 332, 1167, 1665, 1938, 2012, 2073, 2659
DinI	GGCGCC	1 cut(s)	683
EaeI	YGGCCR	1 cut(s)	849
Eam1104I	CTCTTC	5 cut(s)	54, 308, 375, 663, 2261
EarI	CTCTTC	5 cut(s)	54, 308, 375, 663, 2261
EciI	GGCGGA	1 cut(s)	995
Eco130I	CCWWGG	3 cut(s)	659, 2208, 2725
Eco147I	AGGCCT	2 cut(s)	155, 2827
Eco31I	GGTCTC	3 cut(s)	1484, 2205, 2784
Eco47I	GGWCC	5 cut(s)	890, 899, 1786, 2396, 2938
Eco72I	CACGTG	1 cut(s)	1012
Eco88I	CYCGRG	2 cut(s)	989, 2343
EcoNI	CCTNNNNNAGG	1 cut(s)	2662
EcoO109I	RGGNCCY	1 cut(s)	1669
EcoRI	GAATTC	2 cut(s)	460, 937
EcoRII	CCWGG	2 cut(s)	142, 838
EcoT14I	CCWWGG	3 cut(s)	659, 2208, 2725
EcoT22I	ATGCAT	1 cut(s)	1573
EgeI	GGCGCC	1 cut(s)	683
EheI	GGCGCC	1 cut(s)	683
ErhI	CCWWGG	3 cut(s)	659, 2208, 2725
Esp3I	CGTCTC	1 cut(s)	2485
FaeI	CATG	5 cut(s)	443, 715, 1274, 2780, 2909
FaqI	GGGAC	5 cut(s)	1772, 2382, 2681, 2822, 2951
FatI	CATG	5 cut(s)	439, 711, 1270, 2776, 2905
FauI	CCCGC	4 cut(s)	1276, 1743, 2293, 2799
FauNDI	CATATG	2 cut(s)	846, 1294
FbaI	TGATCA	1 cut(s)	997
FspBI	CTAG	6 cut(s)	639, 660, 930, 1860, 1934, 2051
GlaI	GCGC	2 cut(s)	683, 2301
GsaI	CCCAGC	1 cut(s)	1449
GsuI	CTGGAG	2 cut(s)	822, 2618
HaeII	RGCGCY	1 cut(s)	685
HaeIII	GGCC	9 cut(s)	155, 631, 658, 851, 909, 1670, 2213, 2827, 2859
HapII	CCGG	5 cut(s)	22, 200, 2794, 2860, 2941
HgaI	GACGC	1 cut(s)	1959
HhaI	GCGC	2 cut(s)	684, 2302
Hin1I	GRCGYC	1 cut(s)	682
Hin1II	CATG	5 cut(s)	443, 715, 1274, 2780, 2909
Hin6I	GCGC	2 cut(s)	682, 2300
HinP1I	GCGC	2 cut(s)	682, 2300
HindIII	AAGCTT	3 cut(s)	518, 1596, 2247
HpaII	CCGG	5 cut(s)	22, 200, 2794, 2860, 2941
HphI	GGTGA	9 cut(s)	205, 224, 554, 992, 1184, 1865, 2402, 2741, 2855
HpyAV	CCTTC	8 cut(s)	145, 184, 241, 672, 1647, 2188, 2566, 2834
HpyCH4III	ACNGT	6 cut(s)	877, 979, 1255, 2184, 2459, 2717
HpyCH4IV	ACGT	6 cut(s)	567, 1011, 1375, 1385, 1737, 2494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	827, 1321, 1442, 1886, 2432
HpyF3I	CTNAG	8 cut(s)	309, 332, 1167, 1665, 1938, 2012, 2073, 2659
HpySE526I	ACGT	6 cut(s)	567, 1011, 1375, 1385, 1737, 2494
Hsp92I	GRCGYC	1 cut(s)	682
Hsp92II	CATG	5 cut(s)	443, 715, 1274, 2780, 2909
HspAI	GCGC	2 cut(s)	682, 2300
KasI	GGCGCC	1 cut(s)	681
Ksp22I	TGATCA	1 cut(s)	997
LmnI	GCTCC	6 cut(s)	673, 835, 1561, 1901, 2473, 2536
Lsp1109I	GCAGC	7 cut(s)	1285, 1454, 1867, 1916, 1940, 2245, 2815
MaeI	CTAG	6 cut(s)	639, 660, 930, 1860, 1934, 2051
MaeII	ACGT	6 cut(s)	567, 1011, 1375, 1385, 1737, 2494
MaeIII	GTNAC	2 cut(s)	916, 1371
MbiI	CCGCTC	1 cut(s)	80
MhlI	GDGCHC	2 cut(s)	1558, 2344
MlsI	TGGCCA	1 cut(s)	851
MluNI	TGGCCA	1 cut(s)	851
Mly113I	GGCGCC	1 cut(s)	682
MlyI	GAGTC	7 cut(s)	25, 128, 1405, 1474, 1481, 1933, 2609
MmeI	TCCRAC	3 cut(s)	550, 1689, 1923
Mox20I	TGGCCA	1 cut(s)	851
Mph1103I	ATGCAT	1 cut(s)	1573
MroXI	GAANNNNTTC	3 cut(s)	600, 948, 1683
MscI	TGGCCA	1 cut(s)	851
MseI	TTAA	5 cut(s)	1382, 1485, 1626, 1674, 2357
MslI	CAYNNNNRTG	1 cut(s)	2715
Msp20I	TGGCCA	1 cut(s)	851
MspA1I	CMGCKG	2 cut(s)	1445, 2806
MspCI	CTTAAG	2 cut(s)	1484, 1673
MspI	CCGG	5 cut(s)	22, 200, 2794, 2860, 2941
MspR9I	CCNGG	5 cut(s)	22, 144, 840, 2795, 2861
Mva1269I	GAATGC	3 cut(s)	1573, 2080, 2439
MvaI	CCWGG	2 cut(s)	144, 840
MvnI	CGCG	1 cut(s)	2302
MwoI	GCNNNNNNNGC	5 cut(s)	827, 1321, 1442, 1886, 2432
NarI	GGCGCC	1 cut(s)	682
NciI	CCSGG	3 cut(s)	22, 2795, 2861
NdeI	CATATG	2 cut(s)	846, 1294
NlaIII	CATG	5 cut(s)	443, 715, 1274, 2780, 2909
NlaIV	GGNNCC	6 cut(s)	683, 871, 1788, 2398, 2711, 2939
NmuCI	GTSAC	1 cut(s)	916
NsiI	ATGCAT	1 cut(s)	1573
NspV	TTCGAA	1 cut(s)	2838
OliI	CACNNNNGTG	1 cut(s)	2715
PagI	TCATGA	1 cut(s)	711
PceI	AGGCCT	2 cut(s)	155, 2827
PctI	GAATGC	3 cut(s)	1573, 2080, 2439
PdmI	GAANNNNTTC	3 cut(s)	600, 948, 1683
PfeI	GAWTC	8 cut(s)	203, 1090, 1234, 1343, 2158, 2227, 2525, 2621
PfoI	TCCNGGA	1 cut(s)	838
PleI	GAGTC	7 cut(s)	25, 127, 1404, 1474, 1480, 1932, 2608
PluTI	GGCGCC	1 cut(s)	685
PmaCI	CACGTG	1 cut(s)	1012
PmlI	CACGTG	1 cut(s)	1012
PpsI	GAGTC	7 cut(s)	25, 127, 1404, 1474, 1480, 1932, 2608
Ppu21I	YACGTR	3 cut(s)	1012, 1376, 1738
Psp1406I	AACGTT	1 cut(s)	1385
Psp6I	CCWGG	2 cut(s)	142, 838
PspCI	CACGTG	1 cut(s)	1012
PspFI	CCCAGC	1 cut(s)	1445
PspGI	CCWGG	2 cut(s)	142, 838
PspN4I	GGNNCC	6 cut(s)	683, 871, 1788, 2398, 2711, 2939
PspPI	GGNCC	9 cut(s)	629, 890, 899, 908, 1669, 1786, 2212, 2396, 2938
PstI	CTGCAG	2 cut(s)	1303, 1958
PvuII	CAGCTG	1 cut(s)	1445
RsaI	GTAC	2 cut(s)	1288, 2742
RsaNI	GTAC	2 cut(s)	1287, 2741
RseI	CAYNNNNRTG	1 cut(s)	2715
SaqAI	TTAA	5 cut(s)	1382, 1485, 1626, 1674, 2357
Sau96I	GGNCC	9 cut(s)	629, 890, 899, 908, 1669, 1786, 2212, 2396, 2938
SchI	GAGTC	7 cut(s)	25, 128, 1405, 1474, 1481, 1933, 2609
ScrFI	CCNGG	5 cut(s)	22, 144, 840, 2795, 2861
SduI	GDGCHC	2 cut(s)	1558, 2344
SfcI	CTRYAG	2 cut(s)	1299, 1954
SfoI	GGCGCC	1 cut(s)	683
SfuI	TTCGAA	1 cut(s)	2838
SinI	GGWCC	5 cut(s)	890, 899, 1786, 2396, 2938
SmiMI	CAYNNNNRTG	1 cut(s)	2715
SmlI	CTYRAG	4 cut(s)	1484, 1673, 2187, 2531
SmoI	CTYRAG	4 cut(s)	1484, 1673, 2187, 2531
SseBI	AGGCCT	2 cut(s)	155, 2827
SspDI	GGCGCC	1 cut(s)	681
SspI	AATATT	1 cut(s)	2125
SspMI	CTAG	6 cut(s)	639, 660, 930, 1860, 1934, 2051
StuI	AGGCCT	2 cut(s)	155, 2827
StyD4I	CCNGG	5 cut(s)	20, 142, 838, 2793, 2859
StyI	CCWWGG	3 cut(s)	659, 2208, 2725
TaaI	ACNGT	6 cut(s)	877, 979, 1255, 2184, 2459, 2717
TaiI	ACGT	6 cut(s)	570, 1014, 1378, 1388, 1740, 2497
TaqI	TCGA	5 cut(s)	14, 149, 358, 366, 2838
TaqII	GACCGA	1 cut(s)	1755
TatI	WGTACW	1 cut(s)	2740
TauI	GCSGC	4 cut(s)	451, 737, 2112, 2710
TfiI	GAWTC	8 cut(s)	203, 1090, 1234, 1343, 2158, 2227, 2525, 2621
Tru1I	TTAA	5 cut(s)	1382, 1485, 1626, 1674, 2357
Tru9I	TTAA	5 cut(s)	1382, 1485, 1626, 1674, 2357
TscAI	CASTG	4 cut(s)	880, 1558, 2464, 2722
TseFI	GTSAC	1 cut(s)	916
TseI	GCWGC	7 cut(s)	1298, 1442, 1880, 1904, 1953, 2233, 2803
Tsp45I	GTSAC	1 cut(s)	916
TspGWI	ACGGA	3 cut(s)	24, 255, 891
TspRI	CASTG	4 cut(s)	880, 1558, 2464, 2722
Vha464I	CTTAAG	2 cut(s)	1484, 1673
VpaK11BI	GGWCC	5 cut(s)	890, 899, 1786, 2396, 2938
XagI	CCTNNNNNAGG	1 cut(s)	2662
XapI	RAATTY	8 cut(s)	433, 460, 500, 598, 937, 1358, 1589, 2098
XcmI	CCANNNNNNNNNTGG	1 cut(s)	692
XmaJI	CCTAGG	1 cut(s)	659
XmnI	GAANNNNTTC	3 cut(s)	600, 948, 1683
XspI	CTAG	6 cut(s)	639, 660, 930, 1860, 1934, 2051
Zsp2I	ATGCAT	1 cut(s)	1573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.