Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013568

Physical Location & Seq

Genomic Coordinates Reverse (-)

8969215 .. 8972125

Gene Structure 2911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAATCGCCGATTACTCAACCCCAAATGTTTAGATTGCAGTTTCTTCGTCTTCTTCATAGTCGACGATCACCCCAAGTTCCATTAATAGCCGATTCTTCAAATCCTATCGAGAATCCTCTCTTTCAAGCTGATGTTCCTTCTACCACAGCAATAGAGTCTTGTCCAAAAGAAAACATTGGTAAGTTAAAAGATATGCTTAAAGAAGAAAACATTCATTTGCACACTGAGGATTCAGAGCAAGGGAAATTACCTTTGCTTATTTTAAGCTTGAAAGAGAGAAGTGAAGAAAAAAGGCCAGCGATTGTGTTTATGCATGGCACAAACACAAACAAAGAATGGTTAAGGCCATGGCTTGAAGCATATGCTTCGCGGGGATATGTAGCCATCGGTTTAGACTCTCGTTACCACGGTGAACGTGCTGATTGCAAAACTGCATATCGAGATGCTCTTATATCATCTTGGAGAAATGGAAACACTATGCCTTTTATCTTTGATACTGTATGGGATTTGATCAAACTAGCTGAATATCTTACTCAGAGGGATGATATAGACCCGAAAAAGATAGGAATCACCGGTATTTCGCTAGGAGGGATGCATGCTTGGTTTGCTGCTGCAGCTGACACTCGCTATTCCGTGGTTGTCCCATTAATCGGTGTTCAGGGTTTTAGATGGGCAATAGAGAATGATGAGTGGGAAGCAAGAGTCAACAGTATCAAACCTTTATTTGAAGAAGCAAGGATTGATCTCGGAAAGAACATAATCGACAAAGAACTAGTCGAGAAGGTGTGGAACAGAATAGCTCCTGGCCTAGCTTCGAAGTTTGATTCACCGTACTCATTACCAGTGATTGCTCCACGGCCTCTTTACATCCTTAACGGCGCAAATGATCCTCGATGTCCTCTTGGCGGACTAGAACTTGCGTTAAAGAGAGCTGAAAAGGCGTATAAGGAAACAGCTTCTCCTGGAAACTTCAAGTTCAAAGCAGAAGATGGAGTTGGACACGAAGCGACGAGTTTCATGATCAAAGAATCATCAGACTGGTTTGACAAATTCCTTAAACAAGAAGATATGACAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AXE1 Abhydrolase_6 Peptidase_S9

Protein Analysis

360

Amino Acids

40.81

Weight (kDa)

5.91

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AXE1	PF05448	93 - 217	3.4e-07	Acetyl xylan esterase (AXE1)
Abhydrolase_6	PF12697	102 - 339	1.5e-06	Alpha/beta hydrolase family
Peptidase_S9	PF00326	167 - 220	7.2e-07	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25770 AT5G25770 AT5G25770
fragaria_vesca	FvH4_2g35900
malus_domestica	MD08G1116700.v1.1
prunus_persica	Prupe.1G451100_v2.0.a1 Prupe.1G451100_v2.0.a1
pyrus_communis	pycom08g09720
rosa_chinensis	RchiOBHm_Chr6g0305921
rosa_laevigata	RLG00000010846
rosa_multiflora	Rmu_sc0001809.1_g000049
rosa_roxburghii	Rroxscaffold_7G00162220
rosa_rugosa	Rorug06G0345400
rosa_samantha	Rh6AG456900 Rh6BG444400 Rh6CG470800 Rh6DG457500
rosa_wichuraiana	Rw6G039860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	64
AccII	CGCG	1 cut(s)	373
AciI	CCGC	2 cut(s)	373, 909
AclWI	GGATC	1 cut(s)	884
AcsI	RAATTY	1 cut(s)	1052
AfaI	GTAC	1 cut(s)	836
AfiI	CCNNNNNNNGG	2 cut(s)	653, 908
AgeI	ACCGGT	1 cut(s)	575
AgsI	TTSAA	7 cut(s)	102, 128, 274, 359, 731, 976, 982
AhlI	ACTAGT	1 cut(s)	775
AjnI	CCWGG	2 cut(s)	805, 964
AjuI	GAANNNNNNNTTGG	2 cut(s)	981, 1013
AluBI	AGCT	8 cut(s)	131, 270, 524, 620, 803, 815, 935, 959
AluI	AGCT	8 cut(s)	131, 270, 524, 620, 803, 815, 935, 959
AlwI	GGATC	1 cut(s)	884
AoxI	GGCC	4 cut(s)	296, 347, 808, 860
ApeKI	GCWGC	3 cut(s)	611, 614, 617
ApoI	RAATTY	1 cut(s)	1052
ArsI	GACNNNNNNTTYG	2 cut(s)	762, 794
AseI	ATTAAT	2 cut(s)	86, 650
AsiGI	ACCGGT	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	884
AsuHPI	GGTGA	4 cut(s)	63, 425, 565, 822
AsuII	TTCGAA	1 cut(s)	818
BbsI	GAAGAC	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	598, 601, 629
BccI	CCATC	3 cut(s)	395, 666, 986
BceAI	ACGGC	2 cut(s)	875, 895
BcgI	CGANNNNNNTGC	4 cut(s)	29, 63, 351, 385
BciT130I	CCWGG	2 cut(s)	807, 966
BclI	TGATCA	2 cut(s)	513, 1023
BcuI	ACTAGT	1 cut(s)	775
BfaI	CTAG	5 cut(s)	521, 587, 776, 812, 914
BfmI	CTRYAG	1 cut(s)	615
BisI	GCNGC	3 cut(s)	612, 615, 618
BlsI	GCNGC	3 cut(s)	613, 616, 619
Bme1390I	CCNGG	2 cut(s)	807, 966
BmrFI	CCNGG	2 cut(s)	807, 966
BmsI	GCATC	2 cut(s)	436, 585
BpiI	GAAGAC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	818
BsaBI	GATNNNNATC	1 cut(s)	569
BsaJI	CCNNGG	4 cut(s)	350, 409, 636, 857
BsaWI	WCCGGW	1 cut(s)	575
BsaXI	ACNNNNNCTCC	2 cut(s)	946, 976
Bsc4I	CCNNNNNNNGG	2 cut(s)	653, 908
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	2 cut(s)	845, 1046
Bse8I	GATNNNNATC	1 cut(s)	569
BseBI	CCWGG	2 cut(s)	807, 966
BseDI	CCNNGG	4 cut(s)	350, 409, 636, 857
BseGI	GGATG	3 cut(s)	550, 600, 870
BseJI	GATNNNNATC	1 cut(s)	569
BseLI	CCNNNNNNNGG	2 cut(s)	653, 908
BseMII	CTCAG	2 cut(s)	219, 551
BseNI	ACTGG	2 cut(s)	845, 1046
BseXI	GCAGC	3 cut(s)	598, 601, 629
Bsh1236I	CGCG	1 cut(s)	373
BshFI	GGCC	4 cut(s)	298, 349, 810, 862
BshTI	ACCGGT	1 cut(s)	575
BsiSI	CCGG	1 cut(s)	576
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	2 cut(s)	653, 908
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	4 cut(s)	298, 349, 810, 862
Bsp119I	TTCGAA	1 cut(s)	818
Bsp143I	GATC	5 cut(s)	68, 513, 745, 889, 1023
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	2 cut(s)	373, 909
BspANI	GGCC	4 cut(s)	298, 349, 810, 862
BspCNI	CTCAG	2 cut(s)	220, 550
BspFNI	CGCG	1 cut(s)	373
BspHI	TCATGA	1 cut(s)	1020
BspMAI	CTGCAG	1 cut(s)	619
BspPI	GGATC	1 cut(s)	884
BspT104I	TTCGAA	1 cut(s)	818
BsrFI	RCCGGY	1 cut(s)	575
BsrI	ACTGG	2 cut(s)	845, 1046
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	4 cut(s)	350, 409, 636, 857
BssMI	GATC	5 cut(s)	68, 513, 745, 889, 1023
BssT1I	CCWWGG	1 cut(s)	350
Bst2UI	CCWGG	2 cut(s)	807, 966
Bst4CI	ACNGT	4 cut(s)	413, 502, 713, 834
BstBI	TTCGAA	1 cut(s)	818
BstC8I	GCNNGC	2 cut(s)	300, 600
BstDEI	CTNAG	2 cut(s)	228, 537
BstDSI	CCRYGG	4 cut(s)	350, 409, 636, 857
BstF5I	GGATG	3 cut(s)	550, 600, 870
BstFNI	CGCG	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	884
BstKTI	GATC	5 cut(s)	71, 516, 748, 892, 1026
BstMBI	GATC	5 cut(s)	68, 513, 745, 889, 1023
BstMWI	GCNNNNNNNGC	3 cut(s)	608, 617, 941
BstNI	CCWGG	2 cut(s)	807, 966
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	2 cut(s)	805, 964
BstSFI	CTRYAG	1 cut(s)	615
BstUI	CGCG	1 cut(s)	373
BstV1I	GCAGC	3 cut(s)	598, 601, 629
BstV2I	GAAGAC	1 cut(s)	44
BsuRI	GGCC	4 cut(s)	298, 349, 810, 862
BtgI	CCRYGG	4 cut(s)	350, 409, 636, 857
BtsCI	GGATG	3 cut(s)	550, 600, 870
BtsIMutI	CAGTG	2 cut(s)	225, 852
Cac8I	GCNNGC	2 cut(s)	300, 600
CciI	TCATGA	1 cut(s)	1020
CfoI	GCGC	1 cut(s)	884
Cfr10I	RCCGGY	1 cut(s)	575
Csp6I	GTAC	1 cut(s)	835
CspAI	ACCGGT	1 cut(s)	575
CviAII	CATG	4 cut(s)	317, 351, 599, 1021
CviQI	GTAC	1 cut(s)	835
DdeI	CTNAG	2 cut(s)	228, 537
DpnI	GATC	5 cut(s)	70, 515, 747, 891, 1025
DpnII	GATC	5 cut(s)	68, 513, 745, 889, 1023
EciI	GGCGGA	1 cut(s)	924
Eco130I	CCWWGG	1 cut(s)	350
EcoRII	CCWGG	2 cut(s)	805, 964
EcoT14I	CCWWGG	1 cut(s)	350
EcoT22I	ATGCAT	2 cut(s)	318, 600
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	4 cut(s)	320, 354, 602, 1024
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	4 cut(s)	316, 350, 598, 1020
FauI	CCCGC	1 cut(s)	366
FauNDI	CATATG	1 cut(s)	364
FbaI	TGATCA	2 cut(s)	513, 1023
FblI	GTMKAC	1 cut(s)	64
Fnu4HI	GCNGC	3 cut(s)	612, 615, 618
FokI	GGATG	3 cut(s)	557, 607, 857
Fsp4HI	GCNGC	3 cut(s)	612, 615, 618
FspBI	CTAG	5 cut(s)	521, 587, 776, 812, 914
GlaI	GCGC	1 cut(s)	883
GluI	GCNGC	3 cut(s)	612, 615, 618
HaeIII	GGCC	4 cut(s)	298, 349, 810, 862
HapII	CCGG	1 cut(s)	576
HhaI	GCGC	1 cut(s)	884
Hin1II	CATG	4 cut(s)	320, 354, 602, 1024
Hin6I	GCGC	1 cut(s)	882
HinP1I	GCGC	1 cut(s)	882
HincII	GTYRAC	2 cut(s)	65, 709
HindII	GTYRAC	2 cut(s)	65, 709
HindIII	AAGCTT	1 cut(s)	268
HpaII	CCGG	1 cut(s)	576
HphI	GGTGA	4 cut(s)	63, 425, 565, 822
Hpy166II	GTNNAC	3 cut(s)	65, 416, 709
Hpy188I	TCNGA	4 cut(s)	238, 540, 752, 1039
Hpy188III	TCNNGA	4 cut(s)	112, 443, 781, 1021
Hpy8I	GTNNAC	3 cut(s)	65, 416, 709
Hpy99I	CGWCG	2 cut(s)	69, 1015
HpyAV	CCTTC	2 cut(s)	150, 778
HpyCH4III	ACNGT	4 cut(s)	413, 502, 713, 834
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	7 cut(s)	40, 223, 316, 429, 437, 598, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	608, 617, 941
HpyF3I	CTNAG	2 cut(s)	228, 537
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	4 cut(s)	320, 354, 602, 1024
HspAI	GCGC	1 cut(s)	882
Ksp22I	TGATCA	2 cut(s)	513, 1023
Kzo9I	GATC	5 cut(s)	68, 513, 745, 889, 1023
LmnI	GCTCC	2 cut(s)	808, 859
LpnPI	CCDG	9 cut(s)	312, 589, 647, 792, 819, 858, 951, 978, 1027
Lsp1109I	GCAGC	3 cut(s)	598, 601, 629
LweI	GCATC	2 cut(s)	436, 585
MaeI	CTAG	5 cut(s)	521, 587, 776, 812, 914
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	5 cut(s)	70, 515, 747, 891, 1025
MboI	GATC	5 cut(s)	68, 513, 745, 889, 1023
MboII	GAAGA	9 cut(s)	38, 44, 47, 90, 218, 299, 743, 1001, 1079
MluCI	AATT	2 cut(s)	248, 1052
MlyI	GAGTC	3 cut(s)	167, 392, 714
MmeI	TCCRAC	1 cut(s)	979
MnlI	CCTC	7 cut(s)	129, 223, 534, 584, 873, 903, 912
Mph1103I	ATGCAT	2 cut(s)	318, 600
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	9 cut(s)	86, 188, 201, 266, 344, 650, 876, 926, 1059
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	1 cut(s)	576
MspR9I	CCNGG	2 cut(s)	807, 966
MvaI	CCWGG	2 cut(s)	807, 966
MvnI	CGCG	1 cut(s)	373
MwoI	GCNNNNNNNGC	3 cut(s)	608, 617, 941
NcoI	CCATGG	1 cut(s)	350
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	5 cut(s)	68, 513, 745, 889, 1023
NlaIII	CATG	4 cut(s)	320, 354, 602, 1024
NsiI	ATGCAT	2 cut(s)	318, 600
NspI	RCATGY	1 cut(s)	602
NspV	TTCGAA	1 cut(s)	818
PaeI	GCATGC	1 cut(s)	602
PagI	TCATGA	1 cut(s)	1020
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	7 cut(s)	5, 95, 115, 233, 570, 827, 1031
PfoI	TCCNGGA	1 cut(s)	964
PinAI	ACCGGT	1 cut(s)	575
PkrI	GCNGC	3 cut(s)	613, 616, 619
PleI	GAGTC	3 cut(s)	166, 392, 713
PpsI	GAGTC	3 cut(s)	166, 392, 713
PshBI	ATTAAT	2 cut(s)	86, 650
Psp6I	CCWGG	2 cut(s)	805, 964
PspGI	CCWGG	2 cut(s)	805, 964
PstI	CTGCAG	1 cut(s)	619
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	1 cut(s)	836
RsaNI	GTAC	1 cut(s)	835
SalI	GTCGAC	1 cut(s)	63
SaqAI	TTAA	9 cut(s)	86, 188, 201, 266, 344, 650, 876, 926, 1059
SatI	GCNGC	3 cut(s)	612, 615, 618
Sau3AI	GATC	5 cut(s)	68, 513, 745, 889, 1023
SchI	GAGTC	3 cut(s)	167, 392, 714
ScrFI	CCNGG	2 cut(s)	807, 966
SfaNI	GCATC	2 cut(s)	436, 585
SfcI	CTRYAG	1 cut(s)	615
SfuI	TTCGAA	1 cut(s)	818
SpeI	ACTAGT	1 cut(s)	775
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	2 cut(s)	248, 1052
SsiI	CCGC	2 cut(s)	373, 909
SspMI	CTAG	5 cut(s)	521, 587, 776, 812, 914
StyD4I	CCNGG	2 cut(s)	805, 964
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	4 cut(s)	413, 502, 713, 834
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	7 cut(s)	64, 111, 442, 765, 780, 818, 895
TasI	AATT	2 cut(s)	248, 1052
TfiI	GAWTC	7 cut(s)	5, 95, 115, 233, 570, 827, 1031
Tru1I	TTAA	9 cut(s)	86, 188, 201, 266, 344, 650, 876, 926, 1059
Tru9I	TTAA	9 cut(s)	86, 188, 201, 266, 344, 650, 876, 926, 1059
TscAI	CASTG	2 cut(s)	232, 852
TseI	GCWGC	3 cut(s)	611, 614, 617
TspDTI	ATGAA	3 cut(s)	47, 206, 1009
TspGWI	ACGGA	1 cut(s)	625
TspRI	CASTG	2 cut(s)	232, 852
VspI	ATTAAT	2 cut(s)	86, 650
XapI	RAATTY	1 cut(s)	1052
XceI	RCATGY	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	5 cut(s)	521, 587, 776, 812, 914
Zsp2I	ATGCAT	2 cut(s)	318, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.