Rmu_sc0001809.1_g000049

Prolyl oligopeptidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001809.1
OG0013568
Physical Location & Seq
Reverse (-)
250002 .. 252915
2914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001809.1_g000049.1.cds

Sequence Viewer

Length: 1284 bp
atgacccacgctctcatcatccatcttcctctgcagcactccactctatcatcaccatccaccaccctcccgcacgtgcgacctcccctggcccacacgtgggcacgccgagttccctccccgccaaaaatattcccctataaataccggtccctgtctcagtctcagtcgaccagacccagatcaaacactgacaccctagtaacccaaatggccgaggaagctgtagacgcccagaagcttcgttccgagttttacagagtcttgagtagcaggcgatgtggcgaagttccgttaacggtggagccggcgaaaccggtgaccaatcctttgtttcaggaggctaaccctccaagcttcagcgaggcaatgaacgcttgccccaaggctaacattaccaactttaaggagaggctacaagaggaaaatctttacctaattactgaggcaggagagcaggggaggttacctgtgttgattttgagcatgaaggaagaaaaacttacccagaaaaagcctgctgttgtttttctgcatagtactaacaagaacaaagagtggttgagaccattgcttgaggcctatgcttcaaggggatatgtagcgattgcgattgattctcgctaccatggtgaacgtgccactaatataaccacttaccgagatgctctcatatcagcatggaaaagaggaaatacaatgccattcttatttgatacggtctgggacttgataaaattggcagattatctaattcagagggaggatgtagatcctgctaggctaggcatcactggtgaatcactgggaggtatgcatgcatggttggctgctgctgctgacacccgctatgcagtggttgtccctataattggtgttcagggttttcgatgggcgatagacaatgataagtggcaggctcgagtcgacagtataaaacctgttttcgaagaagcacgaattgatctaaacaagagtgtgattgacaaagaagtagtggagaaggtgtgggataggattgctccaggtctggcctctcagtttgattctccttatacagtgccagctattgcaccacgtcctctattgattttaaatggtgcagaagatcctcgatgtccactcgctggtctggatgttcccaaagcgagagcactcaaggcttatgaagatgcagagagtgtagataaatttaagttaatagcagagcccggcatcggccaccaaataaccgctcttatggtaaaagaggcaagccactggtttgataaatttctccagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AXE1 Abhydrolase_6 Peptidase_S9

Protein Analysis

427

Amino Acids

47.99

Weight (kDa)

8.55

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25770 AT5G25770 AT5G25770
fragaria_vesca FvH4_2g35900
malus_domestica MD08G1116700.v1.1
prunus_persica Prupe.1G451100_v2.0.a1 Prupe.1G451100_v2.0.a1
pyrus_communis pycom08g09720
rosa_chinensis RchiOBHm_Chr6g0305921
rosa_laevigata RLG00000010846
rosa_multiflora Rmu_sc0001809.1_g000049
rosa_roxburghii Rroxscaffold_7G00162220
rosa_rugosa Rorug06G0345400
rosa_samantha Rh6AG456900 Rh6BG444400 Rh6CG470800 Rh6DG457500
rosa_wichuraiana Rw6G039860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1127
AccBSI CCGCTC 1 cut(s) 1235
AccI GTMKAC 3 cut(s) 170, 228, 927
AciI CCGC 4 cut(s) 71, 122, 847, 1233
AclWI GGATC 2 cut(s) 767, 1103
AcoI YGGCCR 2 cut(s) 213, 1219
AcsI RAATTY 2 cut(s) 1190, 1271
AcuI CTGAAG 1 cut(s) 343
AcvI CACGTG 2 cut(s) 76, 99
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 541
AfiI CCNNNNNNNGG 5 cut(s) 99, 100, 872, 1127, 1217
AflIII ACRYGT 1 cut(s) 96
AgeI ACCGGT 2 cut(s) 147, 316
AgsI TTSAA 1 cut(s) 591
AjiI CACGTC 1 cut(s) 1079
AjnI CCWGG 2 cut(s) 87, 1024
AluBI AGCT 4 cut(s) 224, 241, 357, 1067
AluI AGCT 4 cut(s) 224, 241, 357, 1067
Alw21I GWGCWC 1 cut(s) 1156
Alw26I GTCTC 3 cut(s) 162, 168, 559
AlwI GGATC 2 cut(s) 767, 1103
Ama87I CYCGRG 1 cut(s) 921
AoxI GGCC 5 cut(s) 90, 213, 579, 1032, 1219
ApeKI GCWGC 4 cut(s) 34, 830, 833, 836
ApoI RAATTY 2 cut(s) 1190, 1271
ArsI GACNNNNNNTTYG 2 cut(s) 313, 345
AsiGI ACCGGT 2 cut(s) 147, 316
AspS9I GGNCC 2 cut(s) 91, 150
AsuC2I CCSGG 1 cut(s) 1212
AsuHPI GGTGA 4 cut(s) 45, 331, 644, 809
AsuII TTCGAA 1 cut(s) 948
AvaI CYCGRG 1 cut(s) 921
AvaII GGWCC 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 1212
BbrPI CACGTG 2 cut(s) 76, 99
Bbv12I GWGCWC 1 cut(s) 1156
BbvI GCAGC 4 cut(s) 46, 817, 820, 823
BccI CCATC 3 cut(s) 30, 64, 885
BciT130I CCWGG 2 cut(s) 89, 1026
BcnI CCSGG 1 cut(s) 1212
BcoDI GTCTC 3 cut(s) 162, 168, 559
BfaI CTAG 3 cut(s) 200, 780, 785
BfmI CTRYAG 2 cut(s) 32, 225
BisI GCNGC 4 cut(s) 35, 831, 834, 837
BlsI GCNGC 4 cut(s) 36, 832, 835, 838
BmcAI AGTACT 1 cut(s) 541
Bme1390I CCNGG 3 cut(s) 89, 1026, 1212
Bme18I GGWCC 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 921
BmgBI CACGTC 1 cut(s) 1079
BmgT120I GGNCC 2 cut(s) 91, 150
BmiI GGNNCC 2 cut(s) 152, 306
BmrFI CCNGG 3 cut(s) 89, 1026, 1212
BmrI ACTGGG 1 cut(s) 815
BmsI GCATC 4 cut(s) 655, 798, 1162, 1224
BmuI ACTGGG 1 cut(s) 815
BplI GAGNNNNNCTC 2 cut(s) 654, 686
BpmI CTGGAG 2 cut(s) 1008, 1262
Bpu14I TTCGAA 1 cut(s) 948
BpuEI CTTGAG 3 cut(s) 286, 596, 1142
BpuMI CCSGG 1 cut(s) 1212
BsaAI YACGTR 2 cut(s) 76, 99
BsaBI GATNNNNATC 1 cut(s) 771
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 559
BsaJI CCNNGG 4 cut(s) 87, 216, 384, 628
BsaWI WCCGGW 2 cut(s) 147, 316
BsaXI ACNNNNNCTCC 2 cut(s) 992, 1022
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 100, 872, 1127, 1217
Bse118I RCCGGY 3 cut(s) 147, 307, 316
Bse1I ACTGG 4 cut(s) 799, 810, 1265, 1279
Bse3DI GCAATG 2 cut(s) 375, 569
Bse8I GATNNNNATC 1 cut(s) 771
BseBI CCWGG 2 cut(s) 89, 1026
BseDI CCNNGG 4 cut(s) 87, 216, 384, 628
BseGI GGATG 4 cut(s) 18, 56, 772, 1141
BseJI GATNNNNATC 1 cut(s) 771
BseLI CCNNNNNNNGG 5 cut(s) 99, 100, 872, 1127, 1217
BseMI GCAATG 2 cut(s) 375, 569
BseMII CTCAG 4 cut(s) 173, 179, 435, 1052
BseNI ACTGG 4 cut(s) 799, 810, 1265, 1279
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 4 cut(s) 46, 817, 820, 823
BsgI GTGCAG 1 cut(s) 1122
BshFI GGCC 5 cut(s) 92, 215, 581, 1034, 1221
BshTI ACCGGT 2 cut(s) 147, 316
BsiHKAI GWGCWC 1 cut(s) 1156
BsiHKCI CYCGRG 1 cut(s) 921
BsiSI CCGG 4 cut(s) 148, 308, 317, 1212
BslFI GGGAC 3 cut(s) 136, 740, 848
BslI CCNNNNNNNGG 5 cut(s) 99, 100, 872, 1127, 1217
BsmAI GTCTC 3 cut(s) 162, 168, 559
BsmFI GGGAC 3 cut(s) 136, 740, 848
BsnI GGCC 5 cut(s) 92, 215, 581, 1034, 1221
Bso31I GGTCTC 1 cut(s) 559
BsoBI CYCGRG 1 cut(s) 921
Bsp119I TTCGAA 1 cut(s) 948
Bsp1286I GDGCHC 3 cut(s) 106, 1156, 1212
Bsp143I GATC 4 cut(s) 182, 772, 964, 1108
Bsp19I CCATGG 1 cut(s) 628
BspACI CCGC 4 cut(s) 71, 122, 847, 1233
BspANI GGCC 5 cut(s) 92, 215, 581, 1034, 1221
BspCNI CTCAG 4 cut(s) 172, 178, 436, 1051
BspLI GGNNCC 2 cut(s) 152, 306
BspMAI CTGCAG 1 cut(s) 36
BspPI GGATC 2 cut(s) 767, 1103
BspT104I TTCGAA 1 cut(s) 948
BspTNI GGTCTC 1 cut(s) 559
BsrBI CCGCTC 1 cut(s) 1235
BsrDI GCAATG 2 cut(s) 375, 569
BsrFI RCCGGY 3 cut(s) 147, 307, 316
BsrI ACTGG 4 cut(s) 799, 810, 1265, 1279
BssAI RCCGGY 3 cut(s) 147, 307, 316
BssECI CCNNGG 4 cut(s) 87, 216, 384, 628
BssMI GATC 4 cut(s) 182, 772, 964, 1108
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 2 cut(s) 384, 628
Bst2UI CCWGG 2 cut(s) 89, 1026
Bst4CI ACNGT 4 cut(s) 301, 721, 932, 1060
BstACI GRCGYC 1 cut(s) 231
BstBAI YACGTR 2 cut(s) 76, 99
BstBI TTCGAA 1 cut(s) 948
BstC8I GCNNGC 9 cut(s) 106, 275, 309, 379, 519, 819, 918, 1065, 1255
BstDEI CTNAG 4 cut(s) 159, 165, 444, 1038
BstDSI CCRYGG 1 cut(s) 628
BstEII GGTNACC 2 cut(s) 319, 465
BstF5I GGATG 4 cut(s) 18, 56, 772, 1141
BstKTI GATC 4 cut(s) 185, 775, 967, 1111
BstMAI GTCTC 3 cut(s) 162, 168, 559
BstMBI GATC 4 cut(s) 182, 772, 964, 1108
BstMWI GCNNNNNNNGC 6 cut(s) 221, 230, 374, 827, 836, 1160
BstNI CCWGG 2 cut(s) 89, 1026
BstNSI RCATGY 1 cut(s) 821
BstPI GGTNACC 2 cut(s) 319, 465
BstSCI CCNGG 3 cut(s) 87, 1024, 1210
BstSFI CTRYAG 2 cut(s) 32, 225
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 4 cut(s) 46, 817, 820, 823
BstX2I RGATCY 2 cut(s) 772, 1108
BstYI RGATCY 2 cut(s) 772, 1108
BsuRI GGCC 5 cut(s) 92, 215, 581, 1034, 1221
BtgI CCRYGG 1 cut(s) 628
BtgZI GCGATG 1 cut(s) 292
BtrI CACGTC 1 cut(s) 1079
BtsCI GGATG 4 cut(s) 18, 56, 772, 1141
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 6 cut(s) 189, 792, 803, 861, 1065, 1258
Cac8I GCNNGC 9 cut(s) 106, 275, 309, 379, 519, 819, 918, 1065, 1255
Cfr10I RCCGGY 3 cut(s) 147, 307, 316
Cfr13I GGNCC 2 cut(s) 91, 150
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 540
CspAI ACCGGT 2 cut(s) 147, 316
CviAII CATG 5 cut(s) 487, 629, 681, 818, 822
CviQI GTAC 1 cut(s) 540
DdeI CTNAG 4 cut(s) 159, 165, 444, 1038
DpnI GATC 4 cut(s) 184, 774, 966, 1110
DpnII GATC 4 cut(s) 182, 772, 964, 1108
DraI TTTAAA 1 cut(s) 1095
EaeI YGGCCR 2 cut(s) 213, 1219
Eco130I CCWWGG 2 cut(s) 384, 628
Eco147I AGGCCT 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 1212
Eco31I GGTCTC 1 cut(s) 559
Eco47I GGWCC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 343
Eco72I CACGTG 2 cut(s) 76, 99
Eco88I CYCGRG 1 cut(s) 921
Eco91I GGTNACC 2 cut(s) 319, 465
EcoO65I GGTNACC 2 cut(s) 319, 465
EcoRII CCWGG 2 cut(s) 87, 1024
EcoT14I CCWWGG 2 cut(s) 384, 628
EcoT22I ATGCAT 2 cut(s) 819, 823
EcoT38I GRGCYC 1 cut(s) 1212
ErhI CCWWGG 2 cut(s) 384, 628
FaeI CATG 5 cut(s) 490, 632, 684, 821, 825
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 3 cut(s) 136, 740, 848
FatI CATG 5 cut(s) 486, 628, 680, 817, 821
FauI CCCGC 3 cut(s) 78, 129, 854
FblI GTMKAC 3 cut(s) 170, 228, 927
Fnu4HI GCNGC 4 cut(s) 35, 831, 834, 837
FokI GGATG 4 cut(s) 5, 43, 779, 1148
FriOI GRGCYC 1 cut(s) 1212
Fsp4HI GCNGC 4 cut(s) 35, 831, 834, 837
FspBI CTAG 3 cut(s) 200, 780, 785
GluI GCNGC 4 cut(s) 35, 831, 834, 837
GsuI CTGGAG 2 cut(s) 1008, 1262
HaeIII GGCC 5 cut(s) 92, 215, 581, 1034, 1221
HapII CCGG 4 cut(s) 148, 308, 317, 1212
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 5 cut(s) 490, 632, 684, 821, 825
HincII GTYRAC 3 cut(s) 171, 297, 928
HindII GTYRAC 3 cut(s) 171, 297, 928
HindIII AAGCTT 2 cut(s) 239, 355
HinfI GANTC 5 cut(s) 261, 617, 800, 924, 1046
HpaI GTTAAC 1 cut(s) 297
HpaII CCGG 4 cut(s) 148, 308, 317, 1212
HphI GGTGA 4 cut(s) 45, 331, 644, 809
Hpy166II GTNNAC 6 cut(s) 171, 229, 297, 635, 928, 1121
Hpy188I TCNGA 2 cut(s) 250, 759
Hpy188III TCNNGA 3 cut(s) 265, 338, 1133
Hpy8I GTNNAC 6 cut(s) 171, 229, 297, 635, 928, 1121
HpyAV CCTTC 2 cut(s) 484, 997
HpyCH4III ACNGT 4 cut(s) 301, 721, 932, 1060
HpyCH4IV ACGT 4 cut(s) 75, 98, 637, 1078
HpyCH4V TGCA 8 cut(s) 34, 535, 817, 821, 854, 1073, 1103, 1175
HpyF10VI GCNNNNNNNGC 6 cut(s) 221, 230, 374, 827, 836, 1160
HpyF3I CTNAG 4 cut(s) 159, 165, 444, 1038
HpySE526I ACGT 4 cut(s) 75, 98, 637, 1078
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 5 cut(s) 490, 632, 684, 821, 825
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
KspAI GTTAAC 1 cut(s) 297
Kzo9I GATC 4 cut(s) 182, 772, 964, 1108
LmnI GCTCC 2 cut(s) 304, 1027
Lsp1109I GCAGC 4 cut(s) 46, 817, 820, 823
LweI GCATC 4 cut(s) 655, 798, 1162, 1224
MaeI CTAG 3 cut(s) 200, 780, 785
MaeII ACGT 4 cut(s) 75, 98, 637, 1078
MaeIII GTNAC 3 cut(s) 202, 319, 465
MalI GATC 4 cut(s) 184, 774, 966, 1110
MbiI CCGCTC 1 cut(s) 1235
MboI GATC 4 cut(s) 182, 772, 964, 1108
MboII GAAGA 5 cut(s) 17, 506, 962, 1118, 1181
MflI RGATCY 2 cut(s) 772, 1108
MhlI GDGCHC 3 cut(s) 106, 1156, 1212
MluCI AATT 7 cut(s) 438, 737, 753, 870, 960, 1190, 1271
MlyI GAGTC 2 cut(s) 270, 933
Mph1103I ATGCAT 2 cut(s) 819, 823
MroNI GCCGGC 1 cut(s) 307
MseI TTAA 5 cut(s) 296, 405, 1094, 1194, 1199
MspI CCGG 4 cut(s) 148, 308, 317, 1212
MspR9I CCNGG 3 cut(s) 89, 1026, 1212
MvaI CCWGG 2 cut(s) 89, 1026
MwoI GCNNNNNNNGC 6 cut(s) 221, 230, 374, 827, 836, 1160
NaeI GCCGGC 1 cut(s) 309
NciI CCSGG 1 cut(s) 1212
NcoI CCATGG 1 cut(s) 628
NdeII GATC 4 cut(s) 182, 772, 964, 1108
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 5 cut(s) 490, 632, 684, 821, 825
NlaIV GGNNCC 2 cut(s) 152, 306
NmeAIII GCCGAG 2 cut(s) 134, 241
NmuCI GTSAC 1 cut(s) 319
NsiI ATGCAT 2 cut(s) 819, 823
NspI RCATGY 1 cut(s) 821
NspV TTCGAA 1 cut(s) 948
PaeI GCATGC 1 cut(s) 821
PaeR7I CTCGAG 1 cut(s) 921
PceI AGGCCT 1 cut(s) 581
PdiI GCCGGC 1 cut(s) 309
PfeI GAWTC 3 cut(s) 617, 800, 1046
PflMI CCANNNNNTGG 1 cut(s) 1127
PinAI ACCGGT 2 cut(s) 147, 316
PkrI GCNGC 4 cut(s) 36, 832, 835, 838
PleI GAGTC 2 cut(s) 269, 932
PmaCI CACGTG 2 cut(s) 76, 99
PmlI CACGTG 2 cut(s) 76, 99
PpsI GAGTC 2 cut(s) 269, 932
Ppu21I YACGTR 2 cut(s) 76, 99
Psp6I CCWGG 2 cut(s) 87, 1024
PspCI CACGTG 2 cut(s) 76, 99
PspEI GGTNACC 2 cut(s) 319, 465
PspGI CCWGG 2 cut(s) 87, 1024
PspN4I GGNNCC 2 cut(s) 152, 306
PspPI GGNCC 2 cut(s) 91, 150
PspXI VCTCGAGB 1 cut(s) 921
PstI CTGCAG 1 cut(s) 36
PsuI RGATCY 2 cut(s) 772, 1108
RsaI GTAC 1 cut(s) 541
RsaNI GTAC 1 cut(s) 540
SalI GTCGAC 2 cut(s) 169, 926
SaqAI TTAA 5 cut(s) 296, 405, 1094, 1194, 1199
SatI GCNGC 4 cut(s) 35, 831, 834, 837
Sau3AI GATC 4 cut(s) 182, 772, 964, 1108
Sau96I GGNCC 2 cut(s) 91, 150
ScaI AGTACT 1 cut(s) 541
SchI GAGTC 2 cut(s) 270, 933
ScrFI CCNGG 3 cut(s) 89, 1026, 1212
SduI GDGCHC 3 cut(s) 106, 1156, 1212
SfaNI GCATC 4 cut(s) 655, 798, 1162, 1224
SfcI CTRYAG 2 cut(s) 32, 225
Sfr274I CTCGAG 1 cut(s) 921
SfuI TTCGAA 1 cut(s) 948
SinI GGWCC 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 921
SmlI CTYRAG 4 cut(s) 265, 575, 921, 1157
SmoI CTYRAG 4 cut(s) 265, 575, 921, 1157
SphI GCATGC 1 cut(s) 821
Sse9I AATT 7 cut(s) 438, 737, 753, 870, 960, 1190, 1271
SseBI AGGCCT 1 cut(s) 581
SsiI CCGC 4 cut(s) 71, 122, 847, 1233
SspI AATATT 1 cut(s) 132
SspMI CTAG 3 cut(s) 200, 780, 785
StuI AGGCCT 1 cut(s) 581
StyD4I CCNGG 3 cut(s) 87, 1024, 1210
StyI CCWWGG 2 cut(s) 384, 628
TaaI ACNGT 4 cut(s) 301, 721, 932, 1060
TaiI ACGT 4 cut(s) 78, 101, 640, 1081
TaqI TCGA 6 cut(s) 170, 889, 922, 927, 948, 1114
TasI AATT 7 cut(s) 438, 737, 753, 870, 960, 1190, 1271
TatI WGTACW 1 cut(s) 539
TfiI GAWTC 3 cut(s) 617, 800, 1046
Tru1I TTAA 5 cut(s) 296, 405, 1094, 1194, 1199
Tru9I TTAA 5 cut(s) 296, 405, 1094, 1194, 1199
TscAI CASTG 6 cut(s) 196, 799, 810, 861, 1065, 1265
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 4 cut(s) 34, 830, 833, 836
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 3 cut(s) 386, 503, 1182
TspGWI ACGGA 1 cut(s) 282
TspRI CASTG 6 cut(s) 196, 799, 810, 861, 1065, 1265
Van91I CCANNNNNTGG 1 cut(s) 1127
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 2 cut(s) 1190, 1271
XceI RCATGY 1 cut(s) 821
XhoI CTCGAG 1 cut(s) 921
XmiI GTMKAC 3 cut(s) 170, 228, 927
XspI CTAG 3 cut(s) 200, 780, 785
ZrmI AGTACT 1 cut(s) 541
Zsp2I ATGCAT 2 cut(s) 819, 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.