Rh6DG457500

Prolyl oligopeptidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013568
Physical Location & Seq
Reverse (-)
62756954 .. 62760052
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG457500.1

Sequence Viewer

Length: 939 bp
ATGGCCGAGGAAGCTGTAGACGCCCAGAAGCTTCGTTCCGAGTTTTACAGAGTCTTGAATAGCAGGCGATGTGGCGAAGTTCCGTTAACGGTGGAGCCGGCGAAACCGGTGACCAATCCTTTGTTTCAGGAGGCTAACCCTCCAAGCTTCAGCGAGGCAATGAACGCTTGCCCCAAGGCTAACATTACCAACTTTAAGGAGAAGCTACAAGAGGAAAATCTTTACCTAATTACTGAGGCAGGAGAGCAGGGGAGGTTACCTGTGTTGATTTTGAGCATGAAGGAAGAAAAAAGTACCCAGAAAAAGCCTGCTGTTGTTTTTCTGCATAGTACTAACAAGAACAAAGAGTGGTTGAGACCATTGCTTGAGGCCTATGCTTCAAGGGGATATGTAGCGATTGCGATTGATTCTCGCTACCATGGTGAACGTGCCACTAATATAACCACTTACCGAGATGCCCTCATATCAGCATGGAAAAGAGGAAATACAATGCCATTCTTATTTGATACGGTCTGGGACTTGATAAAATTGGCAGATTATCTAACACAGAGGGAGGATGTTGATCCTGCTAGGCTAGGAATCACTGGTGAATCACTGGGAGGTATGCATGCATGGTTGGCTGCTGCTGCTGACACCCGCTATGCAGTGGTTGTCCCTATAATTGGTGTTCAGGGGTTTCGATGGGCGATAGACAATGATAAGTGGCAGGCTCGAGTGGACAGTATAAAACCTGTTTTCGAAGAAGCACGAATTGATCTAAACAAGAGTGCGATTGACAAAGAAGTAGTGGAGAAGGTGTGGGATAGGATTGCTCCAGGTCTGGCCTCTCAGTTTGATTCTCCTTATACAGTGCCAGCTATTGCACCGCGTCCTCTATTGATTTTTAATGGTAAAATCCTTGTTTGCAGTAAACCGTTAATAATCCTATCCAAATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AXE1 Abhydrolase_6 Peptidase_S9

Protein Analysis

312

Amino Acids

35.02

Weight (kDa)

7.65

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AXE1 PF05448 52 - 220 2.6e-07 Acetyl xylan esterase (AXE1)
Abhydrolase_6 PF12697 105 - 294 2.1e-06 Alpha/beta hydrolase family
Peptidase_S9 PF00326 125 - 223 3.9e-08 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25770 AT5G25770 AT5G25770
fragaria_vesca FvH4_2g35900
malus_domestica MD08G1116700.v1.1
prunus_persica Prupe.1G451100_v2.0.a1 Prupe.1G451100_v2.0.a1
pyrus_communis pycom08g09720
rosa_chinensis RchiOBHm_Chr6g0305921
rosa_laevigata RLG00000010846
rosa_multiflora Rmu_sc0001809.1_g000049
rosa_roxburghii Rroxscaffold_7G00162220
rosa_rugosa Rorug06G0345400
rosa_samantha Rh6AG456900 Rh6BG444400 Rh6CG470800 Rh6DG457500
rosa_wichuraiana Rw6G039860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 18
AccII CGCG 1 cut(s) 868
AciI CCGC 2 cut(s) 637, 866
AclWI GGATC 1 cut(s) 557
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 2 cut(s) 295, 331
AfiI CCNNNNNNNGG 1 cut(s) 662
AgeI ACCGGT 1 cut(s) 106
AgsI TTSAA 2 cut(s) 58, 381
AjnI CCWGG 1 cut(s) 814
AluBI AGCT 5 cut(s) 14, 31, 147, 205, 857
AluI AGCT 5 cut(s) 14, 31, 147, 205, 857
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 1 cut(s) 557
Ama87I CYCGRG 1 cut(s) 711
AoxI GGCC 3 cut(s) 3, 369, 822
ApeKI GCWGC 3 cut(s) 620, 623, 626
ArsI GACNNNNNNTTYG 2 cut(s) 103, 135
AsiGI ACCGGT 1 cut(s) 106
AsuHPI GGTGA 3 cut(s) 121, 434, 599
AsuII TTCGAA 1 cut(s) 738
AvaI CYCGRG 1 cut(s) 711
BbvI GCAGC 3 cut(s) 607, 610, 613
BccI CCATC 1 cut(s) 675
BciT130I CCWGG 1 cut(s) 816
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 2 cut(s) 570, 575
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 3 cut(s) 621, 624, 627
BlsI GCNGC 3 cut(s) 622, 625, 628
BmcAI AGTACT 1 cut(s) 331
Bme1390I CCNGG 1 cut(s) 816
BmeT110I CYCGRG 1 cut(s) 711
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 816
BmrI ACTGGG 1 cut(s) 605
BmsI GCATC 1 cut(s) 445
BmuI ACTGGG 1 cut(s) 605
BplI GAGNNNNNCTC 2 cut(s) 444, 476
BpmI CTGGAG 1 cut(s) 798
Bpu14I TTCGAA 1 cut(s) 738
BpuEI CTTGAG 1 cut(s) 386
BsaBI GATNNNNATC 1 cut(s) 561
BsaHI GRCGYC 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 349
BsaJI CCNNGG 3 cut(s) 6, 174, 418
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 782, 812
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse118I RCCGGY 2 cut(s) 97, 106
Bse1I ACTGG 2 cut(s) 589, 600
Bse3DI GCAATG 2 cut(s) 165, 359
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 1 cut(s) 816
BseDI CCNNGG 3 cut(s) 6, 174, 418
BseGI GGATG 1 cut(s) 562
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 1 cut(s) 662
BseMI GCAATG 2 cut(s) 165, 359
BseMII CTCAG 2 cut(s) 225, 842
BseNI ACTGG 2 cut(s) 589, 600
BseXI GCAGC 3 cut(s) 607, 610, 613
Bsh1236I CGCG 1 cut(s) 868
BshFI GGCC 3 cut(s) 5, 371, 824
BshTI ACCGGT 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 711
BsiSI CCGG 2 cut(s) 98, 107
BslFI GGGAC 2 cut(s) 530, 638
BslI CCNNNNNNNGG 1 cut(s) 662
BsmAI GTCTC 1 cut(s) 349
BsmFI GGGAC 2 cut(s) 530, 638
BsnI GGCC 3 cut(s) 5, 371, 824
Bso31I GGTCTC 1 cut(s) 349
BsoBI CYCGRG 1 cut(s) 711
Bsp119I TTCGAA 1 cut(s) 738
Bsp143I GATC 2 cut(s) 562, 754
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 2 cut(s) 637, 866
BspANI GGCC 3 cut(s) 5, 371, 824
BspCNI CTCAG 2 cut(s) 226, 841
BspFNI CGCG 1 cut(s) 868
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 1 cut(s) 557
BspT104I TTCGAA 1 cut(s) 738
BspTNI GGTCTC 1 cut(s) 349
BsrDI GCAATG 2 cut(s) 165, 359
BsrFI RCCGGY 2 cut(s) 97, 106
BsrI ACTGG 2 cut(s) 589, 600
BssAI RCCGGY 2 cut(s) 97, 106
BssECI CCNNGG 3 cut(s) 6, 174, 418
BssMI GATC 2 cut(s) 562, 754
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 2 cut(s) 174, 418
Bst2UI CCWGG 1 cut(s) 816
Bst4CI ACNGT 5 cut(s) 91, 511, 722, 850, 915
BstACI GRCGYC 1 cut(s) 21
BstBI TTCGAA 1 cut(s) 738
BstC8I GCNNGC 7 cut(s) 65, 99, 169, 309, 609, 708, 855
BstDEI CTNAG 2 cut(s) 234, 828
BstDSI CCRYGG 1 cut(s) 418
BstEII GGTNACC 2 cut(s) 109, 255
BstF5I GGATG 1 cut(s) 562
BstFNI CGCG 1 cut(s) 868
BstKTI GATC 2 cut(s) 565, 757
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 2 cut(s) 562, 754
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 164, 617, 626
BstNI CCWGG 1 cut(s) 816
BstNSI RCATGY 1 cut(s) 611
BstPI GGTNACC 2 cut(s) 109, 255
BstSCI CCNGG 1 cut(s) 814
BstSFI CTRYAG 1 cut(s) 15
BstUI CGCG 1 cut(s) 868
BstV1I GCAGC 3 cut(s) 607, 610, 613
BsuRI GGCC 3 cut(s) 5, 371, 824
BtgI CCRYGG 1 cut(s) 418
BtgZI GCGATG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 562
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 4 cut(s) 582, 593, 651, 855
Cac8I GCNNGC 7 cut(s) 65, 99, 169, 309, 609, 708, 855
Cfr10I RCCGGY 2 cut(s) 97, 106
CseI GACGC 2 cut(s) 29, 857
Csp6I GTAC 2 cut(s) 294, 330
CspAI ACCGGT 1 cut(s) 106
CviAII CATG 5 cut(s) 277, 419, 471, 608, 612
CviQI GTAC 2 cut(s) 294, 330
DdeI CTNAG 2 cut(s) 234, 828
DpnI GATC 2 cut(s) 564, 756
DpnII GATC 2 cut(s) 562, 754
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 174, 418
Eco147I AGGCCT 1 cut(s) 371
Eco31I GGTCTC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 711
Eco91I GGTNACC 2 cut(s) 109, 255
EcoO65I GGTNACC 2 cut(s) 109, 255
EcoRII CCWGG 1 cut(s) 814
EcoT14I CCWWGG 2 cut(s) 174, 418
EcoT22I ATGCAT 2 cut(s) 609, 613
ErhI CCWWGG 2 cut(s) 174, 418
FaeI CATG 5 cut(s) 280, 422, 474, 611, 615
FaqI GGGAC 2 cut(s) 530, 638
FatI CATG 5 cut(s) 276, 418, 470, 607, 611
FauI CCCGC 1 cut(s) 644
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 3 cut(s) 621, 624, 627
FokI GGATG 1 cut(s) 569
Fsp4HI GCNGC 3 cut(s) 621, 624, 627
FspBI CTAG 2 cut(s) 570, 575
GluI GCNGC 3 cut(s) 621, 624, 627
GsuI CTGGAG 1 cut(s) 798
HaeIII GGCC 3 cut(s) 5, 371, 824
HapII CCGG 2 cut(s) 98, 107
HgaI GACGC 2 cut(s) 29, 857
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 5 cut(s) 280, 422, 474, 611, 615
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HindIII AAGCTT 2 cut(s) 29, 145
HinfI GANTC 5 cut(s) 51, 407, 579, 590, 836
HpaI GTTAAC 1 cut(s) 87
HpaII CCGG 2 cut(s) 98, 107
HphI GGTGA 3 cut(s) 121, 434, 599
Hpy166II GTNNAC 5 cut(s) 19, 87, 425, 718, 911
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 2 cut(s) 55, 128
Hpy8I GTNNAC 5 cut(s) 19, 87, 425, 718, 911
HpyAV CCTTC 2 cut(s) 274, 787
HpyCH4III ACNGT 5 cut(s) 91, 511, 722, 850, 915
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 6 cut(s) 325, 607, 611, 644, 863, 906
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 164, 617, 626
HpyF3I CTNAG 2 cut(s) 234, 828
HpySE526I ACGT 1 cut(s) 427
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 5 cut(s) 280, 422, 474, 611, 615
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
KspAI GTTAAC 1 cut(s) 87
Kzo9I GATC 2 cut(s) 562, 754
LmnI GCTCC 2 cut(s) 94, 817
Lsp1109I GCAGC 3 cut(s) 607, 610, 613
LweI GCATC 1 cut(s) 445
MaeI CTAG 2 cut(s) 570, 575
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 2 cut(s) 109, 255
MalI GATC 2 cut(s) 564, 756
MboI GATC 2 cut(s) 562, 754
MboII GAAGA 2 cut(s) 296, 752
MluCI AATT 4 cut(s) 228, 527, 660, 750
MlyI GAGTC 1 cut(s) 60
Mph1103I ATGCAT 2 cut(s) 609, 613
MroNI GCCGGC 1 cut(s) 97
MseI TTAA 4 cut(s) 86, 195, 885, 917
MspI CCGG 2 cut(s) 98, 107
MspR9I CCNGG 1 cut(s) 816
MvaI CCWGG 1 cut(s) 816
MvnI CGCG 1 cut(s) 868
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 164, 617, 626
NaeI GCCGGC 1 cut(s) 99
NcoI CCATGG 1 cut(s) 418
NdeII GATC 2 cut(s) 562, 754
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 5 cut(s) 280, 422, 474, 611, 615
NlaIV GGNNCC 1 cut(s) 96
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 2 cut(s) 609, 613
NspI RCATGY 1 cut(s) 611
NspV TTCGAA 1 cut(s) 738
PaeI GCATGC 1 cut(s) 611
PaeR7I CTCGAG 1 cut(s) 711
PceI AGGCCT 1 cut(s) 371
PdiI GCCGGC 1 cut(s) 99
PfeI GAWTC 4 cut(s) 407, 579, 590, 836
PinAI ACCGGT 1 cut(s) 106
PkrI GCNGC 3 cut(s) 622, 625, 628
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 814
PspEI GGTNACC 2 cut(s) 109, 255
PspGI CCWGG 1 cut(s) 814
PspN4I GGNNCC 1 cut(s) 96
PspXI VCTCGAGB 1 cut(s) 711
RsaI GTAC 2 cut(s) 295, 331
RsaNI GTAC 2 cut(s) 294, 330
SaqAI TTAA 4 cut(s) 86, 195, 885, 917
SatI GCNGC 3 cut(s) 621, 624, 627
Sau3AI GATC 2 cut(s) 562, 754
ScaI AGTACT 1 cut(s) 331
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 816
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 1 cut(s) 15
Sfr274I CTCGAG 1 cut(s) 711
SfuI TTCGAA 1 cut(s) 738
SlaI CTCGAG 1 cut(s) 711
SmlI CTYRAG 2 cut(s) 365, 711
SmoI CTYRAG 2 cut(s) 365, 711
SphI GCATGC 1 cut(s) 611
Sse9I AATT 4 cut(s) 228, 527, 660, 750
SseBI AGGCCT 1 cut(s) 371
SsiI CCGC 2 cut(s) 637, 866
SspMI CTAG 2 cut(s) 570, 575
StuI AGGCCT 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 814
StyI CCWWGG 2 cut(s) 174, 418
TaaI ACNGT 5 cut(s) 91, 511, 722, 850, 915
TaiI ACGT 1 cut(s) 430
TaqI TCGA 3 cut(s) 679, 712, 738
TasI AATT 4 cut(s) 228, 527, 660, 750
TatI WGTACW 1 cut(s) 329
TfiI GAWTC 4 cut(s) 407, 579, 590, 836
Tru1I TTAA 4 cut(s) 86, 195, 885, 917
Tru9I TTAA 4 cut(s) 86, 195, 885, 917
TscAI CASTG 4 cut(s) 589, 600, 651, 855
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 3 cut(s) 620, 623, 626
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 176, 293
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 4 cut(s) 589, 600, 651, 855
XceI RCATGY 1 cut(s) 611
XhoI CTCGAG 1 cut(s) 711
XmiI GTMKAC 1 cut(s) 18
XspI CTAG 2 cut(s) 570, 575
ZrmI AGTACT 1 cut(s) 331
Zsp2I ATGCAT 2 cut(s) 609, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.