MD08G1116700.v1.1

Prolyl oligopeptidase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
10667310 .. 10671136
3827 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1116700.v1.1.491

Sequence Viewer

Length: 1263 bp
ATGAGGACCCACTCACTCATCGCTGCTCGTCAACAACCTCTGCAATCCAATTCACCAAGCACCACGCTCTCACACGTGGCACCTCCTCCGTCCCACACGTGTCTCTCCGTACCTCCCTCCCCGCCAAAACTGTCCTATAAATACCGGACCAAGTCGCAGGCCAGAAGCAGCAGATCAAAACTCAGTGACTGTGAAGTGAGCGAAATGGACGCTCAGAAGCTTCGCTCGGAGTTCCTCCAAGTTCTGCGCAGCAGACGATCGGGCGAAGTTCCAATGTTGGTTGAGCAGGCGAAACCGGTGGCGAATCCGTTGTTTCAGGAGGATAATCCAGCAAGCTTCAGTGAGGCAATGAACGCTTGTCCGAAAGCCAGCATCCCCGATTTCAAGGATAAGCTGCAGGAAGAAAACCTTTACTTAATTACTGAGGCTGGAGAGCAAGGGCGGTTGCCCGTGTTAATTTTGAGCATGAAGGAAAATTGTACCCAGAAAAGGCCTGCTGTTGTATTTCTGCATAGTACAAACAAGAACAAAGAATGGTTAAGACCATTGCTTGAGGCCTATGCTTCAAGGGGATACGTAGCAATTGCCATTGATTCCCGCTACCATGGCGAACGTGCCAGAAATATCTCCACTTACAGAGATGCTCTCGTATCAGCATGGAAAAAAGGTGATACAATGCCATTCTTATTTGATACGGTCTGGGACTTGATAAAATTGGCAGATTATTTAACACAGAGGGAGGATATAGACCCTACTAGGGTAGGAATCACCGGTGAATCACTTGGAGGGATGCATGCATGGTTTGCTGCTGCTGCTGACACCCGTTATGCAGTAGTGGTTCCTATAATTGGTGTTCAGGGATTTCGATGGGCCATAGACAACGATAAGTGGCAGGCTCGAGTTGACAGTATAAAACCTGTTTTTGAGGAAGCACGAATTGATCTTAGGAAGAGTGTGATTGACAAAGAAGTGGTGGAGAAGGTCTGGGATAGGATTGCTCCCGGTCTGGCCTCCCAGTTTGATTCTCCTTACTCGATTCCAGCTATCGCACCTCGTCCTCTGTTGATTTTAAACGGTGCCGAAGATCCTCGATGTCCGCTTGCTGGTCTGGAAGTTCCCAACTCCAAAGCATGCAAGGCTTATGCAGATGCGCACGCCATAGACAACTTCAAGTTCATAGCGCAGCCAGGAATCGGGCACCAAATGACCCCGCTCATGGTAGTCGAGGCCAGTGACTGGTTCGACCAGTTTCTGAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

421

Amino Acids

46.99

Weight (kDa)

8.11

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AXE1 PF05448 157 - 282 7e-06 Acetyl xylan esterase (AXE1)
Abhydrolase_6 PF12697 167 - 403 1.1e-08 Alpha/beta hydrolase family
Peptidase_S9 PF00326 187 - 368 6.5e-09 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013568)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 248, 1152
AccB1I GGYRCC 3 cut(s) 79, 1076, 1197
AccB7I CCANNNNNTGG 1 cut(s) 1236
AccBSI CCGCTC 1 cut(s) 1213
AciI CCGC 5 cut(s) 122, 442, 598, 1097, 1211
AclWI GGATC 1 cut(s) 1079
AcuI CTGAAG 1 cut(s) 322
AcvI CACGTG 2 cut(s) 76, 99
AfaI GTAC 3 cut(s) 111, 481, 517
AfiI CCNNNNNNNGG 7 cut(s) 489, 757, 848, 1103, 1193, 1216, 1236
AflIII ACRYGT 3 cut(s) 73, 96, 98
AgeI ACCGGT 2 cut(s) 295, 770
AgsI TTSAA 3 cut(s) 385, 567, 1171
AjnI CCWGG 1 cut(s) 1186
AluBI AGCT 4 cut(s) 220, 336, 394, 1043
AluI AGCT 4 cut(s) 220, 336, 394, 1043
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 1079
AlwNI CAGNNNCTG 3 cut(s) 189, 1236, 1252
Ama87I CYCGRG 1 cut(s) 897
AoxI GGCC 6 cut(s) 159, 491, 555, 870, 1008, 1227
ApeKI GCWGC 8 cut(s) 23, 168, 249, 394, 806, 809, 812, 1183
AsiGI ACCGGT 2 cut(s) 295, 770
AspLEI GCGC 3 cut(s) 249, 1153, 1183
AspS9I GGNCC 3 cut(s) 6, 147, 870
AsuC2I CCSGG 1 cut(s) 1002
AsuHPI GGTGA 4 cut(s) 45, 680, 760, 785
AvaI CYCGRG 1 cut(s) 897
AvaII GGWCC 2 cut(s) 6, 147
BaeGI GKGCMC 1 cut(s) 1200
BanI GGYRCC 3 cut(s) 79, 1076, 1197
BbrPI CACGTG 2 cut(s) 76, 99
BbvI GCAGC 8 cut(s) 10, 180, 261, 381, 793, 796, 799, 1195
BccI CCATC 1 cut(s) 861
BciT130I CCWGG 1 cut(s) 1188
BciVI GTATCC 1 cut(s) 566
BcnI CCSGG 1 cut(s) 1002
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 756
BfmI CTRYAG 1 cut(s) 395
BfuI GTATCC 1 cut(s) 566
BisI GCNGC 8 cut(s) 24, 169, 250, 395, 807, 810, 813, 1184
BlsI GCNGC 8 cut(s) 25, 170, 251, 396, 808, 811, 814, 1185
Bme1390I CCNGG 2 cut(s) 1002, 1188
Bme18I GGWCC 2 cut(s) 6, 147
BmeT110I CYCGRG 1 cut(s) 897
BmgT120I GGNCC 3 cut(s) 6, 147, 870
BmiI GGNNCC 5 cut(s) 8, 81, 840, 1078, 1199
BmrFI CCNGG 2 cut(s) 1002, 1188
BmrI ACTGGG 1 cut(s) 1009
BmsI GCATC 4 cut(s) 381, 631, 780, 1138
BmuI ACTGGG 1 cut(s) 1009
BplI GAGNNNNNCTC 2 cut(s) 630, 662
BpmI CTGGAG 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 1002
BsaAI YACGTR 3 cut(s) 76, 99, 577
BsaJI CCNNGG 1 cut(s) 604
BsaWI WCCGGW 3 cut(s) 144, 295, 770
Bsc4I CCNNNNNNNGG 7 cut(s) 489, 757, 848, 1103, 1193, 1216, 1236
Bse118I RCCGGY 2 cut(s) 295, 770
Bse1I ACTGG 4 cut(s) 1015, 1230, 1241, 1246
Bse3DI GCAATG 2 cut(s) 354, 545
BseBI CCWGG 1 cut(s) 1188
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 2 cut(s) 372, 795
BseLI CCNNNNNNNGG 7 cut(s) 489, 757, 848, 1103, 1193, 1216, 1236
BseMI GCAATG 2 cut(s) 354, 545
BseMII CTCAG 3 cut(s) 196, 227, 414
BseNI ACTGG 4 cut(s) 1015, 1230, 1241, 1246
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 1 cut(s) 1200
BseXI GCAGC 8 cut(s) 10, 180, 261, 381, 793, 796, 799, 1195
Bsh1285I CGRYCG 1 cut(s) 260
BshFI GGCC 6 cut(s) 161, 493, 557, 872, 1010, 1229
BshNI GGYRCC 3 cut(s) 79, 1076, 1197
BshTI ACCGGT 2 cut(s) 295, 770
BsiEI CGRYCG 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 897
BsiSI CCGG 4 cut(s) 145, 296, 771, 1002
BslFI GGGAC 2 cut(s) 76, 716
BslI CCNNNNNNNGG 7 cut(s) 489, 757, 848, 1103, 1193, 1216, 1236
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 2 cut(s) 76, 716
BsnI GGCC 6 cut(s) 161, 493, 557, 872, 1010, 1229
BsoBI CYCGRG 1 cut(s) 897
Bsp1286I GDGCHC 1 cut(s) 1200
Bsp143I GATC 4 cut(s) 173, 257, 940, 1084
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 5 cut(s) 122, 442, 598, 1097, 1211
BspANI GGCC 6 cut(s) 161, 493, 557, 872, 1010, 1229
BspCNI CTCAG 3 cut(s) 195, 226, 415
BspLI GGNNCC 5 cut(s) 8, 81, 840, 1078, 1199
BspMAI CTGCAG 1 cut(s) 399
BspPI GGATC 1 cut(s) 1079
BspT107I GGYRCC 3 cut(s) 79, 1076, 1197
BsrBI CCGCTC 1 cut(s) 1213
BsrDI GCAATG 2 cut(s) 354, 545
BsrFI RCCGGY 2 cut(s) 295, 770
BsrI ACTGG 4 cut(s) 1015, 1230, 1241, 1246
BssAI RCCGGY 2 cut(s) 295, 770
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 4 cut(s) 173, 257, 940, 1084
BssT1I CCWWGG 1 cut(s) 604
Bst2UI CCWGG 1 cut(s) 1188
Bst4CI ACNGT 5 cut(s) 132, 191, 697, 908, 1076
Bst6I CTCTTC 1 cut(s) 944
BstAPI GCANNNNNTGC 1 cut(s) 803
BstBAI YACGTR 3 cut(s) 76, 99, 577
BstDEI CTNAG 4 cut(s) 182, 213, 423, 944
BstDSI CCRYGG 1 cut(s) 604
BstF5I GGATG 2 cut(s) 372, 795
BstHHI GCGC 3 cut(s) 249, 1153, 1183
BstKTI GATC 4 cut(s) 176, 260, 943, 1087
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 4 cut(s) 173, 257, 940, 1084
BstMCI CGRYCG 1 cut(s) 260
BstMWI GCNNNNNNNGC 5 cut(s) 353, 606, 803, 812, 1136
BstNI CCWGG 1 cut(s) 1188
BstNSI RCATGY 2 cut(s) 797, 1134
BstSCI CCNGG 2 cut(s) 1000, 1186
BstSFI CTRYAG 1 cut(s) 395
BstSLI GKGCMC 1 cut(s) 1200
BstSNI TACGTA 1 cut(s) 577
BstV1I GCAGC 8 cut(s) 10, 180, 261, 381, 793, 796, 799, 1195
BstX2I RGATCY 1 cut(s) 1084
BstYI RGATCY 1 cut(s) 1084
BsuI GTATCC 1 cut(s) 566
BsuRI GGCC 6 cut(s) 161, 493, 557, 872, 1010, 1229
BtgI CCRYGG 1 cut(s) 604
BtgZI GCGATG 1 cut(s) 4
BtsCI GGATG 2 cut(s) 372, 795
BtsIMutI CAGTG 3 cut(s) 190, 346, 1237
CaiI CAGNNNCTG 3 cut(s) 189, 1236, 1252
CfoI GCGC 3 cut(s) 249, 1153, 1183
Cfr10I RCCGGY 2 cut(s) 295, 770
Cfr13I GGNCC 3 cut(s) 6, 147, 870
CseI GACGC 1 cut(s) 218
Csp6I GTAC 3 cut(s) 110, 480, 516
CspAI ACCGGT 2 cut(s) 295, 770
CviAII CATG 7 cut(s) 466, 605, 657, 794, 798, 1131, 1216
CviQI GTAC 3 cut(s) 110, 480, 516
DdeI CTNAG 4 cut(s) 182, 213, 423, 944
DpnI GATC 4 cut(s) 175, 259, 942, 1086
DpnII GATC 4 cut(s) 173, 257, 940, 1084
DraI TTTAAA 1 cut(s) 1071
Eam1104I CTCTTC 1 cut(s) 944
EarI CTCTTC 1 cut(s) 944
Eco105I TACGTA 1 cut(s) 577
Eco130I CCWWGG 1 cut(s) 604
Eco147I AGGCCT 2 cut(s) 493, 557
Eco47I GGWCC 2 cut(s) 6, 147
Eco57I CTGAAG 1 cut(s) 322
Eco72I CACGTG 2 cut(s) 76, 99
Eco88I CYCGRG 1 cut(s) 897
EcoO109I RGGNCCY 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 1186
EcoT14I CCWWGG 1 cut(s) 604
EcoT22I ATGCAT 2 cut(s) 795, 799
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 7 cut(s) 469, 608, 660, 797, 801, 1134, 1219
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 2 cut(s) 76, 716
FatI CATG 7 cut(s) 465, 604, 656, 793, 797, 1130, 1215
FauI CCCGC 3 cut(s) 129, 605, 1218
Fnu4HI GCNGC 8 cut(s) 24, 169, 250, 395, 807, 810, 813, 1184
FokI GGATG 2 cut(s) 359, 802
Fsp4HI GCNGC 8 cut(s) 24, 169, 250, 395, 807, 810, 813, 1184
FspAI RTGCGCAY 1 cut(s) 1152
FspBI CTAG 1 cut(s) 756
FspI TGCGCA 2 cut(s) 248, 1152
GlaI GCGC 3 cut(s) 248, 1152, 1182
GluI GCNGC 8 cut(s) 24, 169, 250, 395, 807, 810, 813, 1184
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 6 cut(s) 161, 493, 557, 872, 1010, 1229
HapII CCGG 4 cut(s) 145, 296, 771, 1002
HgaI GACGC 1 cut(s) 218
HhaI GCGC 3 cut(s) 249, 1153, 1183
Hin1II CATG 7 cut(s) 469, 608, 660, 797, 801, 1134, 1219
Hin6I GCGC 3 cut(s) 247, 1151, 1181
HinP1I GCGC 3 cut(s) 247, 1151, 1181
HincII GTYRAC 2 cut(s) 32, 904
HindII GTYRAC 2 cut(s) 32, 904
HindIII AAGCTT 2 cut(s) 218, 334
HinfI GANTC 7 cut(s) 304, 593, 765, 776, 1022, 1036, 1191
HpaII CCGG 4 cut(s) 145, 296, 771, 1002
HphI GGTGA 4 cut(s) 45, 680, 760, 785
Hpy166II GTNNAC 2 cut(s) 32, 904
Hpy188I TCNGA 4 cut(s) 216, 229, 363, 1254
Hpy188III TCNNGA 2 cut(s) 317, 1109
Hpy8I GTNNAC 2 cut(s) 32, 904
HpyAV CCTTC 2 cut(s) 463, 973
HpyCH4III ACNGT 5 cut(s) 132, 191, 697, 908, 1076
HpyCH4IV ACGT 4 cut(s) 75, 98, 576, 613
HpyCH4V TGCA 8 cut(s) 43, 397, 511, 793, 797, 830, 1134, 1145
HpyF10VI GCNNNNNNNGC 5 cut(s) 353, 606, 803, 812, 1136
HpyF3I CTNAG 4 cut(s) 182, 213, 423, 944
HpySE526I ACGT 4 cut(s) 75, 98, 576, 613
Hsp92II CATG 7 cut(s) 469, 608, 660, 797, 801, 1134, 1219
HspAI GCGC 3 cut(s) 247, 1151, 1181
Kzo9I GATC 4 cut(s) 173, 257, 940, 1084
LmnI GCTCC 1 cut(s) 1003
Lsp1109I GCAGC 8 cut(s) 10, 180, 261, 381, 793, 796, 799, 1195
LweI GCATC 4 cut(s) 381, 631, 780, 1138
MaeI CTAG 1 cut(s) 756
MaeII ACGT 4 cut(s) 75, 98, 576, 613
MaeIII GTNAC 2 cut(s) 185, 1232
MalI GATC 4 cut(s) 175, 259, 942, 1086
MbiI CCGCTC 1 cut(s) 1213
MboI GATC 4 cut(s) 173, 257, 940, 1084
MboII GAAGA 3 cut(s) 413, 961, 1094
MfeI CAATTG 1 cut(s) 582
MflI RGATCY 1 cut(s) 1084
MhlI GDGCHC 1 cut(s) 1200
MluCI AATT 8 cut(s) 49, 417, 456, 475, 582, 713, 846, 936
Mph1103I ATGCAT 2 cut(s) 795, 799
MseI TTAA 5 cut(s) 416, 455, 539, 728, 1070
MspI CCGG 4 cut(s) 145, 296, 771, 1002
MspR9I CCNGG 2 cut(s) 1002, 1188
MunI CAATTG 1 cut(s) 582
MvaI CCWGG 1 cut(s) 1188
MwoI GCNNNNNNNGC 5 cut(s) 353, 606, 803, 812, 1136
NciI CCSGG 1 cut(s) 1002
NcoI CCATGG 1 cut(s) 604
NdeII GATC 4 cut(s) 173, 257, 940, 1084
NlaIII CATG 7 cut(s) 469, 608, 660, 797, 801, 1134, 1219
NlaIV GGNNCC 5 cut(s) 8, 81, 840, 1078, 1199
NmuCI GTSAC 2 cut(s) 185, 1232
NsbI TGCGCA 2 cut(s) 248, 1152
NsiI ATGCAT 2 cut(s) 795, 799
NspI RCATGY 2 cut(s) 797, 1134
PaeI GCATGC 2 cut(s) 797, 1134
PaeR7I CTCGAG 1 cut(s) 897
PceI AGGCCT 2 cut(s) 493, 557
PfeI GAWTC 7 cut(s) 304, 593, 765, 776, 1022, 1036, 1191
PflFI GACNNNGTC 1 cut(s) 151
PflMI CCANNNNNTGG 1 cut(s) 1236
PinAI ACCGGT 2 cut(s) 295, 770
PkrI GCNGC 8 cut(s) 25, 170, 251, 396, 808, 811, 814, 1185
Ple19I CGATCG 1 cut(s) 260
PmaCI CACGTG 2 cut(s) 76, 99
PmlI CACGTG 2 cut(s) 76, 99
Ppu21I YACGTR 3 cut(s) 76, 99, 577
PpuMI RGGWCCY 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 1186
PspCI CACGTG 2 cut(s) 76, 99
PspGI CCWGG 1 cut(s) 1186
PspN4I GGNNCC 5 cut(s) 8, 81, 840, 1078, 1199
PspPI GGNCC 3 cut(s) 6, 147, 870
PspPPI RGGWCCY 1 cut(s) 6
PspXI VCTCGAGB 1 cut(s) 897
PstI CTGCAG 1 cut(s) 399
PstNI CAGNNNCTG 3 cut(s) 189, 1236, 1252
PsuI RGATCY 1 cut(s) 1084
PsyI GACNNNGTC 1 cut(s) 151
PvuI CGATCG 1 cut(s) 260
RsaI GTAC 3 cut(s) 111, 481, 517
RsaNI GTAC 3 cut(s) 110, 480, 516
SaqAI TTAA 5 cut(s) 416, 455, 539, 728, 1070
SatI GCNGC 8 cut(s) 24, 169, 250, 395, 807, 810, 813, 1184
Sau3AI GATC 4 cut(s) 173, 257, 940, 1084
Sau96I GGNCC 3 cut(s) 6, 147, 870
ScrFI CCNGG 2 cut(s) 1002, 1188
SduI GDGCHC 1 cut(s) 1200
SfaNI GCATC 4 cut(s) 381, 631, 780, 1138
SfcI CTRYAG 1 cut(s) 395
Sfr274I CTCGAG 1 cut(s) 897
SgrAI CRCCGGYG 1 cut(s) 770
SinI GGWCC 2 cut(s) 6, 147
SlaI CTCGAG 1 cut(s) 897
SmlI CTYRAG 2 cut(s) 551, 897
SmoI CTYRAG 2 cut(s) 551, 897
SnaBI TACGTA 1 cut(s) 577
SphI GCATGC 2 cut(s) 797, 1134
Sse9I AATT 8 cut(s) 49, 417, 456, 475, 582, 713, 846, 936
SseBI AGGCCT 2 cut(s) 493, 557
SsiI CCGC 5 cut(s) 122, 442, 598, 1097, 1211
SspMI CTAG 1 cut(s) 756
StuI AGGCCT 2 cut(s) 493, 557
StyD4I CCNGG 2 cut(s) 1000, 1186
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 5 cut(s) 132, 191, 697, 908, 1076
TaiI ACGT 4 cut(s) 78, 101, 579, 616
TaqI TCGA 6 cut(s) 865, 898, 1034, 1090, 1224, 1242
TasI AATT 8 cut(s) 49, 417, 456, 475, 582, 713, 846, 936
TatI WGTACW 1 cut(s) 515
TfiI GAWTC 7 cut(s) 304, 593, 765, 776, 1022, 1036, 1191
Tru1I TTAA 5 cut(s) 416, 455, 539, 728, 1070
Tru9I TTAA 5 cut(s) 416, 455, 539, 728, 1070
TscAI CASTG 3 cut(s) 190, 346, 1237
TseFI GTSAC 2 cut(s) 185, 1232
TseI GCWGC 8 cut(s) 23, 168, 249, 394, 806, 809, 812, 1183
Tsp45I GTSAC 2 cut(s) 185, 1232
TspDTI ATGAA 3 cut(s) 365, 482, 1165
TspGWI ACGGA 3 cut(s) 78, 97, 297
TspRI CASTG 3 cut(s) 190, 346, 1237
Tth111I GACNNNGTC 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 1236
VpaK11BI GGWCC 2 cut(s) 6, 147
XceI RCATGY 2 cut(s) 797, 1134
XhoI CTCGAG 1 cut(s) 897
XspI CTAG 1 cut(s) 756
Zsp2I ATGCAT 2 cut(s) 795, 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.