Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009660

Physical Location & Seq

Genomic Coordinates Forward (+)

49609532 .. 49616131

Gene Structure 6600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0345400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2799 bp

ATGGTGGGGAGGAGGAAGCCACTGGTACTCACTTCCACCAAAACTCTCATCAAATCCGTACTGACTTCGCCGCCGGGAGAACTCACTTCCGACGACGATCACCGACTCTCCGCCGTCGCCGCTGATGACGTGTCTACTAGTTTGCAGCTGCTGCCGCCGGGAATTCTCCGGTTCTCCATCGGTCGGAGCCCCAAATTGGCTTCTCTCGACGACTCTGCTCTCGTCGGCCTCTCCACTTCTCTCCTCAAACGCCTCTGCCTCACCTCCGGCTCCCTGGTGATTGTGAAGAATATGGAGACAAAAATAGAAAGAATTGCTCATGCCATTGTTGTGGATCCTCCGGACCGCTCCGAGAACACTGGACTATCTGCTGCCCAATCTTCCCAGGCAATGCTTATTCTGCCTTGTTGCACTTTCCCTGAAAATGGCCACATGTTGTTAGACCGGGAAGTTGCCTATATATCACCTCTGTTGGCATTTAACATTGACTTGCATACATTGTGCTTGAAATCGCTTGTCCATAGAGGGGAAGCGGCGTTGGCATCTTATTTCGGGGATAGAGTGGACGAAGAGGTGAGTGGGAAAGGCGTCGGGGCTTCTGTGATTGGAATACAACCTCAGTCGGAGTTGCCAAGATATGCTTCGCACTTGAGGGCTTCCTTTGTGAGGATACCAGAATGTGGTAGTCTTGACTCTCTTAGAGGAAATTCGGCTGTTGAACATGAAGATCGTCAAGAAATGATAGATTTGGCACTACATAGCTACTTTGAAGTTGATAGGTATCTAGCAAGAGGTGATGTTTTCAGTATTTGTATAAAATGGAATTGCAAGTCAACGATTTGCGTTCCTTGCAACCAAAGTTTGGAAAATGGGGTTGATAACACTATCTATTTCAAGGTTGTGGCTATGGAACCTTTGGACGAACCAATTCTCCGAGTTAACCGTTCTCAAACTGCCCTTGTGCTTGGAGGAAGTGTCTCTTCTGCTGTGCCCCCTGATTTATTGATTTCTGGACAAAAAGGTTTCACACCCTTGCAAGGGGACACAGTGAAAATATTGGCCTCCATACTTACACCTCTTCTGTGCCCCTCAGCACTATCTTCAAAATTCAGAGTTTCTGTTCTGTTGTATGGATTGGCAGGATGTGGGAAGAGAACAGTTGTTAGATACATTGCTCGTCGATTGGGCCTGCATGTAGTTGAATATAGCTGTCATAATCTGACGATGTCATCTGAAAAAAAGATGTCTGTTGCACTAGCCCAAACCTTGAATGCAGCTCAAAGATACTCGCCAACTATACTTCTTCTCCGCCATTTTGATGTTTTCCGGAATTTGCACGAAGGTTCACCAAATGATCAAGTTGGCATCACTTCTGAAGTTGCATCACTTATAAGGGAATTCACTGAGCCAATCTCTGATTATGGAGACATTGATTCTGAACAAAAACAAAATGGTGATGTTGATTCTGGGAAGATAGGTAGGCATCAAGTGCTGTTCATTGCAGCTGCTGACAGTTCAGAAGGTCTACCGCCAACTATTAGACGTTGCTTTAGCCATGAAATAAGTATGGGTCCTTTGACTGAAGAACAAAGGGTTAGAATGGTCTCACAGTCTTTGCAGAAGGCTTCTGAATTCCTTTCTAATACTAATTCGGAGGATCTTATAAAGGATATAGTTGCGCAGACATCTGGTTTCATGCCTAGAGATATCTGTGCATTGGTTGCTGATGCTGGTGCAAACTTGATTCCCAAAGGCAATGCTCAGATTGATACAGTGAAGTCTGAAGAATCAGATGCTTCTCTCACAAATAATGTTGAATCAGACAGTAAGTCCTCTGAAGTTGCATCTCCGATTCTGGGGAAAGAAAGCTTGACAAAAGCATTGGAAAGATCAAAGAAAAGGAATGCATCAGCCCTCGGTACTCCAAAGGTTCCTGATGTGAAATGGGAAGATGTTGGTGGTCTTGAGGATGTGAAGAAATCAATCCTGGATACTGTTCAGTTACCTCTTCTGCACAAGGACTTGTTTTCATCTGGCTTACGAAAGCGTTCTGGTGTTCTTCTGTATGGTCCTCCTGGAACAGGGAAAACTCTACTGGCAAAAGCTGTTGCAACTGAGTGCTCCCTGAATTTTCTCAGTGTAAAAGGACCTGAACTAATTAATATGTACATAGGAGAGTCAGAAAAGAATATCAGAGACATTTTCCAGAAGGCCAGATCAGCACGCCCATGTGTTATATTTTTTGATGAACTTGATTCTCTTGCTCCAGCCCGAGGTGCATCTGGGGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCCTAAATGATTCGAGTCAGGACTTGTTTATAATTGGAGCAAGTAACAGACCAGATCTAATTGACCCAGCACTTCTACGACCTGGCCGATTTGATAAGTTGCTTTACGTTGGAGTTGTCTCTGATCCATCTTACAGAGAACGGGTTCTCAAAGCTCTTACCCGAAAGTTTAAGTTACATCAAGATGTTTCACTTTATGCAATAGCGAAGAAATGTCCCCCAACCTTCACTGGTGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTTAGCGCAGCTAAGCGTAAGGTTTTGAGTTCAGGCTCAGAATCTTCTTCCATGGACGACCAACCTGACTCTGTTGTTGTCGAGTATGATGATTTTTTCAAGGTCTTAAGGGAGCTATCTCCCTCGCTCTCTACGGCTGAGCTTAGGAAGTATGAGTTGCTGCGAGATCAGTTTGAAGGATCTTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AXE1 Abhydrolase_6 Peptidase_S9

Protein Analysis

932

Amino Acids

101.37

Weight (kDa)

5.99

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	374 - 523	6.3e-13	ATPase family associated with various cellular activities (AAA)
AAA	PF00004	686 - 818	4.2e-46	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35890 FvH4_2g35890 FvH4_2g35890 FvH4_2g35890
malus_domestica	MD08G1116500.v1.1 MD15G1096100.v1.1
prunus_persica	Prupe.1G451000_v2.0.a1 Prupe.1G451000_v2.0.a1
pyrus_communis	pycom08g09710 pycom15g08830
rosa_chinensis	RchiOBHm_Chr6g0305931
rosa_laevigata	RLG00000010845
rosa_multiflora	Rmu_sc0001809.1_g000050 Rmu_sc0039000.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162210
rosa_rugosa	Rorug06G0345400
rosa_samantha	Rh6AG457000 Rh6AG457100 Rh6BG444300 Rh6CG470900 Rh6DG457600
rosa_wichuraiana	Rw6G039870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1391, 1664, 2372
Acc16I	TGCGCA	1 cut(s)	1680
AccB7I	CCANNNNNTGG	2 cut(s)	680, 862
AccBSI	CCGCTC	1 cut(s)	348
AccI	GTMKAC	2 cut(s)	134, 1525
AccIII	TCCGGA	2 cut(s)	340, 1326
AciI	CCGC	8 cut(s)	71, 111, 120, 155, 346, 533, 1309, 1529
AclWI	GGATC	5 cut(s)	329, 342, 1665, 2459, 2794
AcoI	YGGCCR	2 cut(s)	427, 2425
AcsI	RAATTY	7 cut(s)	162, 706, 1106, 1330, 1397, 1631, 2128
AcuI	CTGAAG	4 cut(s)	1395, 1602, 1803, 1857
AcyI	GRCGYC	1 cut(s)	588
AfaI	GTAC	4 cut(s)	27, 60, 1921, 2168
AflII	CTTAAG	1 cut(s)	2713
AflIII	ACRYGT	3 cut(s)	129, 432, 2580
AhdI	GACNNNNNGTC	1 cut(s)	1828
AhlI	ACTAGT	1 cut(s)	137
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	5 cut(s)	273, 384, 1986, 2074, 2422
AjuI	GAANNNNNNNTTGG	2 cut(s)	625, 657
AloI	GAACNNNNNNTCC	2 cut(s)	915, 947
Alw21I	GWGCWC	1 cut(s)	2123
Alw26I	GTCTC	6 cut(s)	290, 982, 1419, 1609, 2190, 2464
AlwI	GGATC	5 cut(s)	329, 342, 1665, 2459, 2794
AlwNI	CAGNNNCTG	2 cut(s)	151, 1508
Ama87I	CYCGRG	1 cut(s)	2271
Aor13HI	TCCGGA	2 cut(s)	340, 1326
AoxI	GGCC	7 cut(s)	226, 427, 1059, 1186, 2211, 2341, 2425
ApeKI	GCWGC	9 cut(s)	145, 148, 151, 371, 1274, 1502, 1505, 2615, 2767
ApoI	RAATTY	7 cut(s)	162, 706, 1106, 1330, 1397, 1631, 2128
AseI	ATTAAT	1 cut(s)	2160
Asp700I	GAANNNNTTC	3 cut(s)	927, 2047, 2484
AspLEI	GCGC	2 cut(s)	1681, 2615
AspS9I	GGNCC	5 cut(s)	343, 1186, 1571, 2069, 2147
AsuC2I	CCSGG	3 cut(s)	75, 159, 446
AsuHPI	GGTGA	8 cut(s)	92, 253, 289, 456, 586, 806, 1338, 1466
AvaI	CYCGRG	1 cut(s)	2271
AvaII	GGWCC	4 cut(s)	343, 1571, 2069, 2147
BaeGI	GKGCMC	2 cut(s)	993, 1088
BalI	TGGCCA	1 cut(s)	429
BamHI	GGATCC	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	2123
BbvCI	CCTCAGC	1 cut(s)	1090
BbvI	GCAGC	9 cut(s)	135, 138, 157, 358, 1286, 1492, 1514, 2627, 2754
BccI	CCATC	3 cut(s)	185, 2333, 2476
BceAI	ACGGC	2 cut(s)	98, 2757
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	5 cut(s)	275, 386, 1988, 2076, 2424
BciVI	GTATCC	2 cut(s)	663, 1984
BclI	TGATCA	1 cut(s)	1354
BcnI	CCSGG	3 cut(s)	75, 159, 446
BcoDI	GTCTC	6 cut(s)	290, 982, 1419, 1609, 2190, 2464
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	4 cut(s)	138, 785, 1256, 1701
BfrI	CTTAAG	1 cut(s)	2713
BfuI	GTATCC	2 cut(s)	663, 1984
BglII	AGATCT	1 cut(s)	2395
BlpI	GCTNAGC	2 cut(s)	2619, 2745
Bme1390I	CCNGG	8 cut(s)	75, 159, 275, 386, 446, 1988, 2076, 2424
Bme18I	GGWCC	4 cut(s)	343, 1571, 2069, 2147
BmeRI	GACNNNNNGTC	1 cut(s)	1828
BmeT110I	CYCGRG	1 cut(s)	2271
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	5 cut(s)	343, 1186, 1571, 2069, 2147
BmiI	GGNNCC	6 cut(s)	188, 271, 336, 912, 1572, 1932
BmrFI	CCNGG	8 cut(s)	75, 159, 275, 386, 446, 1988, 2076, 2424
BplI	GAGNNNNNCTC	2 cut(s)	1397, 1429
BpmI	CTGGAG	1 cut(s)	2250
Bpu10I	CCTNAGC	2 cut(s)	1090, 2750
Bpu1102I	GCTNAGC	2 cut(s)	2619, 2745
BpuEI	CTTGAG	2 cut(s)	670, 1985
BpuMI	CCSGG	3 cut(s)	75, 159, 446
BsaBI	GATNNNNATC	1 cut(s)	780
BsaHI	GRCGYC	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	1609
BsaJI	CCNNGG	5 cut(s)	273, 384, 1915, 2272, 2658
BsaWI	WCCGGW	3 cut(s)	168, 340, 1326
BsaXI	ACNNNNNCTCC	8 cut(s)	92, 122, 915, 945, 960, 990, 1290, 1320
Bse1I	ACTGG	4 cut(s)	27, 364, 2100, 2575
Bse3DI	GCAATG	4 cut(s)	396, 1170, 1497, 1762
Bse8I	GATNNNNATC	1 cut(s)	780
BseAI	TCCGGA	2 cut(s)	340, 1326
BseBI	CCWGG	5 cut(s)	275, 386, 1988, 2076, 2424
BseDI	CCNNGG	5 cut(s)	273, 384, 1915, 2272, 2658
BseGI	GGATG	2 cut(s)	1148, 1975
BseJI	GATNNNNATC	1 cut(s)	780
BseMI	GCAATG	4 cut(s)	396, 1170, 1497, 1762
BseMII	CTCAG	9 cut(s)	632, 1104, 1395, 1775, 2106, 2149, 2333, 2658, 2736
BseNI	ACTGG	4 cut(s)	27, 364, 2100, 2575
BseRI	GAGGAG	2 cut(s)	25, 233
BseSI	GKGCMC	2 cut(s)	993, 1088
BseXI	GCAGC	9 cut(s)	135, 138, 157, 358, 1286, 1492, 1514, 2627, 2754
BseYI	CCCAGC	1 cut(s)	2407
BsgI	GTGCAG	3 cut(s)	1997, 2595, 2616
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	7 cut(s)	228, 429, 1061, 1188, 2213, 2343, 2427
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	2123
BsiHKCI	CYCGRG	1 cut(s)	2271
BsiSI	CCGG	7 cut(s)	74, 158, 169, 267, 341, 445, 1327
BslFI	GGGAC	2 cut(s)	1055, 2541
BsmAI	GTCTC	6 cut(s)	290, 982, 1419, 1609, 2190, 2464
BsmFI	GGGAC	2 cut(s)	1055, 2541
BsmI	GAATGC	2 cut(s)	1276, 1909
BsnI	GGCC	7 cut(s)	228, 429, 1061, 1188, 2213, 2343, 2427
Bso31I	GGTCTC	1 cut(s)	1609
BsoBI	CYCGRG	1 cut(s)	2271
Bsp1286I	GDGCHC	4 cut(s)	191, 993, 1088, 2123
Bsp13I	TCCGGA	2 cut(s)	340, 1326
Bsp1407I	TGTACA	1 cut(s)	2166
Bsp1720I	GCTNAGC	2 cut(s)	2619, 2745
Bsp19I	CCATGG	1 cut(s)	2658
BspACI	CCGC	8 cut(s)	71, 111, 120, 155, 346, 533, 1309, 1529
BspANI	GGCC	7 cut(s)	228, 429, 1061, 1188, 2213, 2343, 2427
BspCNI	CTCAG	9 cut(s)	631, 1103, 1396, 1774, 2107, 2148, 2332, 2657, 2737
BspEI	TCCGGA	2 cut(s)	340, 1326
BspLI	GGNNCC	6 cut(s)	188, 271, 336, 912, 1572, 1932
BspPI	GGATC	5 cut(s)	329, 342, 1665, 2459, 2794
BspTI	CTTAAG	1 cut(s)	2713
BspTNI	GGTCTC	1 cut(s)	1609
BsrBI	CCGCTC	1 cut(s)	348
BsrDI	GCAATG	4 cut(s)	396, 1170, 1497, 1762
BsrGI	TGTACA	1 cut(s)	2166
BsrI	ACTGG	4 cut(s)	27, 364, 2100, 2575
BssECI	CCNNGG	5 cut(s)	273, 384, 1915, 2272, 2658
BssNI	GRCGYC	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	2658
Bst2UI	CCWGG	5 cut(s)	275, 386, 1988, 2076, 2424
Bst4CI	ACNGT	8 cut(s)	944, 1048, 1159, 1514, 1611, 1774, 1826, 1996
Bst6I	CTCTTC	5 cut(s)	564, 985, 1083, 1145, 2013
BstACI	GRCGYC	1 cut(s)	588
BstAFI	CTTAAG	1 cut(s)	2713
BstAPI	GCANNNNNTGC	3 cut(s)	151, 1489, 1721
BstAUI	TGTACA	1 cut(s)	2166
BstC8I	GCNNGC	3 cut(s)	1190, 2224, 2328
BstDSI	CCRYGG	1 cut(s)	2658
BstENI	CCTNNNNNAGG	2 cut(s)	664, 2079
BstF5I	GGATG	2 cut(s)	1148, 1975
BstHHI	GCGC	2 cut(s)	1681, 2615
BstMAI	GTCTC	6 cut(s)	290, 982, 1419, 1609, 2190, 2464
BstMCI	CGRYCG	1 cut(s)	184
BstNI	CCWGG	5 cut(s)	275, 386, 1988, 2076, 2424
BstNSI	RCATGY	3 cut(s)	436, 1196, 2584
BstSCI	CCNGG	8 cut(s)	73, 157, 273, 384, 444, 1986, 2074, 2422
BstSLI	GKGCMC	2 cut(s)	993, 1088
BstV1I	GCAGC	9 cut(s)	135, 138, 157, 358, 1286, 1492, 1514, 2627, 2754
BstX2I	RGATCY	4 cut(s)	334, 1657, 2395, 2786
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstYI	RGATCY	4 cut(s)	334, 1657, 2395, 2786
BsuI	GTATCC	2 cut(s)	663, 1984
BsuRI	GGCC	7 cut(s)	228, 429, 1061, 1188, 2213, 2343, 2427
BtgI	CCRYGG	1 cut(s)	2658
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	1148, 1975
BtsIMutI	CAGTG	7 cut(s)	20, 357, 1053, 1401, 1779, 2143, 2568
Cac8I	GCNNGC	3 cut(s)	1190, 2224, 2328
CaiI	CAGNNNCTG	2 cut(s)	151, 1508
CfoI	GCGC	2 cut(s)	1681, 2615
Cfr13I	GGNCC	5 cut(s)	343, 1186, 1571, 2069, 2147
CpoI	CGGWCCG	1 cut(s)	343
CseI	GACGC	1 cut(s)	577
Csp6I	GTAC	4 cut(s)	26, 59, 1920, 2167
CspI	CGGWCCG	1 cut(s)	343
CviAII	CATG	9 cut(s)	320, 433, 722, 1193, 1556, 1696, 2229, 2581, 2659
CviQI	GTAC	4 cut(s)	26, 59, 1920, 2167
DriI	GACNNNNNGTC	1 cut(s)	1828
EaeI	YGGCCR	2 cut(s)	427, 2425
Eam1104I	CTCTTC	5 cut(s)	564, 985, 1083, 1145, 2013
Eam1105I	GACNNNNNGTC	1 cut(s)	1828
EarI	CTCTTC	5 cut(s)	564, 985, 1083, 1145, 2013
EciI	GGCGGA	2 cut(s)	100, 1298
Eco130I	CCWWGG	1 cut(s)	2658
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	1609
Eco32I	GATATC	1 cut(s)	1708
Eco47I	GGWCC	4 cut(s)	343, 1571, 2069, 2147
Eco57I	CTGAAG	4 cut(s)	1395, 1602, 1803, 1857
Eco88I	CYCGRG	1 cut(s)	2271
EcoNI	CCTNNNNNAGG	2 cut(s)	664, 2079
EcoO109I	RGGNCCY	2 cut(s)	1571, 2147
EcoRI	GAATTC	3 cut(s)	162, 1397, 1631
EcoRII	CCWGG	5 cut(s)	273, 384, 1986, 2074, 2422
EcoRV	GATATC	1 cut(s)	1708
EcoT14I	CCWWGG	1 cut(s)	2658
EcoT22I	ATGCAT	1 cut(s)	1909
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	2658
FaeI	CATG	9 cut(s)	323, 436, 725, 1196, 1559, 1699, 2232, 2584, 2662
FalI	AAGNNNNNCTT	4 cut(s)	625, 657, 964, 996
FaqI	GGGAC	2 cut(s)	1055, 2541
FatI	CATG	9 cut(s)	319, 432, 721, 1192, 1555, 1695, 2228, 2580, 2658
FbaI	TGATCA	1 cut(s)	1354
FblI	GTMKAC	2 cut(s)	134, 1525
FokI	GGATG	2 cut(s)	1155, 1982
FriOI	GRGCYC	1 cut(s)	191
FspBI	CTAG	4 cut(s)	138, 785, 1256, 1701
FspI	TGCGCA	1 cut(s)	1680
GlaI	GCGC	2 cut(s)	1680, 2614
GsaI	CCCAGC	1 cut(s)	2411
GsuI	CTGGAG	1 cut(s)	2250
HaeIII	GGCC	7 cut(s)	228, 429, 1061, 1188, 2213, 2343, 2427
HapII	CCGG	7 cut(s)	74, 158, 169, 267, 341, 445, 1327
HgaI	GACGC	1 cut(s)	577
HhaI	GCGC	2 cut(s)	1681, 2615
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	9 cut(s)	323, 436, 725, 1196, 1559, 1699, 2232, 2584, 2662
Hin6I	GCGC	2 cut(s)	1679, 2613
HinP1I	GCGC	2 cut(s)	1679, 2613
HincII	GTYRAC	2 cut(s)	834, 940
HindII	GTYRAC	2 cut(s)	834, 940
HindIII	AAGCTT	1 cut(s)	1867
HpaI	GTTAAC	1 cut(s)	940
HpaII	CCGG	7 cut(s)	74, 158, 169, 267, 341, 445, 1327
HphI	GGTGA	8 cut(s)	92, 253, 289, 456, 586, 806, 1338, 1466
Hpy166II	GTNNAC	6 cut(s)	135, 565, 834, 940, 1346, 1526
Hpy8I	GTNNAC	6 cut(s)	135, 565, 834, 940, 1346, 1526
Hpy99I	CGWCG	7 cut(s)	95, 98, 119, 212, 227, 593, 1182
HpyAV	CCTTC	6 cut(s)	1334, 1514, 1615, 2203, 2575, 2777
HpyCH4III	ACNGT	8 cut(s)	944, 1048, 1159, 1514, 1611, 1774, 1826, 1996
HpyCH4IV	ACGT	3 cut(s)	129, 1543, 2448
HpySE526I	ACGT	3 cut(s)	129, 1543, 2448
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	9 cut(s)	323, 436, 725, 1196, 1559, 1699, 2232, 2584, 2662
HspAI	GCGC	2 cut(s)	1679, 2613
Kpn2I	TCCGGA	2 cut(s)	340, 1326
Ksp22I	TGATCA	1 cut(s)	1354
KspAI	GTTAAC	1 cut(s)	940
LmnI	GCTCC	7 cut(s)	186, 275, 353, 2126, 2269, 2378, 2719
Lsp1109I	GCAGC	9 cut(s)	135, 138, 157, 358, 1286, 1492, 1514, 2627, 2754
MaeI	CTAG	4 cut(s)	138, 785, 1256, 1701
MaeII	ACGT	3 cut(s)	129, 1543, 2448
MaeIII	GTNAC	3 cut(s)	2001, 2384, 2514
MbiI	CCGCTC	1 cut(s)	348
MflI	RGATCY	4 cut(s)	334, 1657, 2395, 2786
MhlI	GDGCHC	4 cut(s)	191, 993, 1088, 2123
MlsI	TGGCCA	1 cut(s)	429
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	6 cut(s)	99, 206, 686, 2186, 2365, 2669
MmeI	TCCRAC	4 cut(s)	114, 164, 603, 2431
Mox20I	TGGCCA	1 cut(s)	429
Mph1103I	ATGCAT	1 cut(s)	1909
MroI	TCCGGA	2 cut(s)	340, 1326
MroXI	GAANNNNTTC	3 cut(s)	927, 2047, 2484
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	5 cut(s)	480, 939, 2160, 2511, 2714
MslI	CAYNNNNRTG	4 cut(s)	329, 1317, 2227, 2523
Msp20I	TGGCCA	1 cut(s)	429
MspA1I	CMGCKG	3 cut(s)	122, 148, 1505
MspCI	CTTAAG	1 cut(s)	2713
MspI	CCGG	7 cut(s)	74, 158, 169, 267, 341, 445, 1327
MspR9I	CCNGG	8 cut(s)	75, 159, 275, 386, 446, 1988, 2076, 2424
Mva1269I	GAATGC	2 cut(s)	1276, 1909
MvaI	CCWGG	5 cut(s)	275, 386, 1988, 2076, 2424
NciI	CCSGG	3 cut(s)	75, 159, 446
NcoI	CCATGG	1 cut(s)	2658
NlaIII	CATG	9 cut(s)	323, 436, 725, 1196, 1559, 1699, 2232, 2584, 2662
NlaIV	GGNNCC	6 cut(s)	188, 271, 336, 912, 1572, 1932
NsbI	TGCGCA	1 cut(s)	1680
NsiI	ATGCAT	1 cut(s)	1909
NspI	RCATGY	3 cut(s)	436, 1196, 2584
PciI	ACATGT	2 cut(s)	432, 2580
PcsI	WCGNNNNNNNCGW	1 cut(s)	2425
PctI	GAATGC	2 cut(s)	1276, 1909
PdmI	GAANNNNTTC	3 cut(s)	927, 2047, 2484
PflFI	GACNNNGTC	1 cut(s)	1225
PflMI	CCANNNNNTGG	2 cut(s)	680, 862
PfoI	TCCNGGA	2 cut(s)	1986, 2074
PleI	GAGTC	6 cut(s)	99, 206, 686, 2185, 2364, 2669
PpsI	GAGTC	6 cut(s)	99, 206, 686, 2185, 2364, 2669
PpuMI	RGGWCCY	2 cut(s)	1571, 2147
PscI	ACATGT	2 cut(s)	432, 2580
PshBI	ATTAAT	1 cut(s)	2160
PsiI	TTATAA	3 cut(s)	1391, 1664, 2372
Psp5II	RGGWCCY	2 cut(s)	1571, 2147
Psp6I	CCWGG	5 cut(s)	273, 384, 1986, 2074, 2422
PspFI	CCCAGC	1 cut(s)	2407
PspGI	CCWGG	5 cut(s)	273, 384, 1986, 2074, 2422
PspN4I	GGNNCC	6 cut(s)	188, 271, 336, 912, 1572, 1932
PspPI	GGNCC	5 cut(s)	343, 1186, 1571, 2069, 2147
PspPPI	RGGWCCY	2 cut(s)	1571, 2147
PstNI	CAGNNNCTG	2 cut(s)	151, 1508
PsuI	RGATCY	4 cut(s)	334, 1657, 2395, 2786
PsyI	GACNNNGTC	1 cut(s)	1225
PvuII	CAGCTG	2 cut(s)	148, 1505
RsaI	GTAC	4 cut(s)	27, 60, 1921, 2168
RsaNI	GTAC	4 cut(s)	26, 59, 1920, 2167
RseI	CAYNNNNRTG	4 cut(s)	329, 1317, 2227, 2523
Rsr2I	CGGWCCG	1 cut(s)	343
RsrII	CGGWCCG	1 cut(s)	343
SaqAI	TTAA	5 cut(s)	480, 939, 2160, 2511, 2714
Sau96I	GGNCC	5 cut(s)	343, 1186, 1571, 2069, 2147
SchI	GAGTC	6 cut(s)	99, 206, 686, 2186, 2365, 2669
ScrFI	CCNGG	8 cut(s)	75, 159, 275, 386, 446, 1988, 2076, 2424
SduI	GDGCHC	4 cut(s)	191, 993, 1088, 2123
SinI	GGWCC	4 cut(s)	343, 1571, 2069, 2147
SmiMI	CAYNNNNRTG	4 cut(s)	329, 1317, 2227, 2523
SmlI	CTYRAG	3 cut(s)	649, 1964, 2713
SmoI	CTYRAG	3 cut(s)	649, 1964, 2713
SpeI	ACTAGT	1 cut(s)	137
SsiI	CCGC	8 cut(s)	71, 111, 120, 155, 346, 533, 1309, 1529
SspI	AATATT	1 cut(s)	1056
SspMI	CTAG	4 cut(s)	138, 785, 1256, 1701
StyD4I	CCNGG	8 cut(s)	73, 157, 273, 384, 444, 1986, 2074, 2422
StyI	CCWWGG	1 cut(s)	2658
TaaI	ACNGT	8 cut(s)	944, 1048, 1159, 1514, 1611, 1774, 1826, 1996
TaiI	ACGT	3 cut(s)	132, 1546, 2451
TaqI	TCGA	4 cut(s)	207, 1180, 2354, 2688
TaqII	GACCGA	1 cut(s)	170
TatI	WGTACW	1 cut(s)	2166
TauI	GCSGC	4 cut(s)	73, 122, 157, 536
Tru1I	TTAA	5 cut(s)	480, 939, 2160, 2511, 2714
Tru9I	TTAA	5 cut(s)	480, 939, 2160, 2511, 2714
TscAI	CASTG	7 cut(s)	27, 364, 1053, 1408, 1779, 2143, 2575
TseI	GCWGC	9 cut(s)	145, 148, 151, 371, 1274, 1502, 1505, 2615, 2767
TspDTI	ATGAA	6 cut(s)	738, 1486, 1572, 1684, 2019, 2262
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	7 cut(s)	27, 364, 1053, 1408, 1779, 2143, 2575
Tth111I	GACNNNGTC	1 cut(s)	1225
Van91I	CCANNNNNTGG	2 cut(s)	680, 862
Vha464I	CTTAAG	1 cut(s)	2713
VpaK11BI	GGWCC	4 cut(s)	343, 1571, 2069, 2147
VspI	ATTAAT	1 cut(s)	2160
XagI	CCTNNNNNAGG	2 cut(s)	664, 2079
XapI	RAATTY	7 cut(s)	162, 706, 1106, 1330, 1397, 1631, 2128
XceI	RCATGY	3 cut(s)	436, 1196, 2584
XmiI	GTMKAC	2 cut(s)	134, 1525
XmnI	GAANNNNTTC	3 cut(s)	927, 2047, 2484
XspI	CTAG	4 cut(s)	138, 785, 1256, 1701
Zsp2I	ATGCAT	1 cut(s)	1909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.