Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009660

Physical Location & Seq

Genomic Coordinates Reverse (-)

62760915 .. 62767093

Gene Structure 6179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG457600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1848 bp

ATGGAGCAGAGCGAAACGGTTTCCGGTACGGCGCCTAAGAAATTGGCGAGGCAATTGGATTTCACGGCGCCGGTTCAGCCGTCCGTTAACTCTGCGTTGCCGGAGCGGTCTGGACCGGCGGCGGTTCAAGTACAGTCGCAGTCGCAGCCACAGCCGCATCTGCGGGCGCATCCACAGACGCAGCCGTGGTCACAGCCACAGCTACAGCTACAGTCACAGTCACAGTCACAGTCACAGCCACAGCAGCTGCATAACTCGCCGGCACAGTTGGCGTTACAGTCACAACAGCAGGGGACGGTGGTGCAATCGCCGAAGCCGTATTTGACGCAGGCGGTCTTGCACTTTCAGGCGAGGCCGGTGGGGCCGACGATGCCCGTGAACGGCCGGATTGCGCACTTGCCACCGAAATTGGGAAAACACGAGTCTCCTAAACCACGCGCACGCAGCGAAGCGAAAGAAAGTACTCCAAAGAAACAAAAGCTGTGCAATTGTAAAAATTCACGGTGCCTCAAGTTGTACTGTGAGTGCTTTGCAGCTGGAATTTATTGTAAAGGATGCAACTGCATAAATTGTCATAATAATGTGGACAATGAAGCTGCTAGGCAGGATGCGGTTGGAGCAATTTTAGAGCGTAACCCAAAAGCATTCAGACCAAAGATTGCTAGCAGTCCACATGAATCTCGCGATTCTTGGGAAGATGCTGGGGAGGTTCAAAAGCACCACAAAGGATGTGCTTGCAGGAAGTCTGGGTGTCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAATGTTCTGTGTTCTGAAAACTGTAAATGCATGGACTGCAAAAACTTTGATGGAAGTGAAGAAAGAAGGGCTATCTTTCATGAAGATCACAATACGATAGCCAACATGCAACAGGCAAATGCTGCCATTAGTGGGGCCATTGGATCCTCTGGGTTTGGGCCCCTGGTGTCCAGACAAAGACCGAGCGATGAACTTTTTTCTGGCATTGGAGCCAGAGATCAATCAGTTCACCGGATTACACAGGCTCAGCAGGAAAATCACTTAAGACCTCCTATGGCCTCTTCTTCTCTGTTATCTGTTCCTACTTTTGGTACTCCTAATGCTGCAGTATCAGGATCTTCAAAACCCACATACAGATCTATGTTGGCAAATATCATCCAACCTGAGAACATAAAGGATCTGTGTTCACGTCTGGTTGTAGTTTCAGGAGAAGCTGCAAAGGCACTTGCAGAAAATAGGCAAAAAGAGATGATTGATAAGACTACTACCATCTCAGCCACTCGAGAGGGGAAAGAAAGTAAAAGGAAACAAGATCAAAATTATGCGCATGGTGACCGTTTGGGAATGAATCAAGCAGATAGAGATGGCAGCAGTGGTTCTGGATCAGATGGAGGCGATGTGCAAAATAGTAGACCAATGTCCCCTGGAACACTTGCCCTGATGTGTGATGAACAAGATAAGATGTTTATGGCAGCTGAGCTGCCAAATGGGATAACAACGAATAGTCCAAGCACAACTCAGAATCCATCTCAGGAAATAGGTTGCACGGAGGTTTATGAAGAGCAGGAAAGAGTTGTCCTCACAGGATTCAGGGATTTCCTAAACCTTCTTATTACTCGTGGTAGTATAAAAGAAACAATGTGTTCTCCCATAGCCAAAAGGGAGAGGGAAATCCAAAAGGATTCTGTAGAGGGTGGAACCCCAAAGAAACCCAGGTGCGAGAAAGCAACATACAGCAATGACATTGGGAAATCTCCTGCTTCAACAAATGGTAAAGTGCTTCAGTCAGTAGTCACTTATGTCTCTGAAGTTGGATTGCCCTTGAAAAATAATACTGGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

615

Amino Acids

67.02

Weight (kDa)

8.81

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCR	PF03638	160 - 194	2.7e-11	Tesmin/TSO1-like CXC domain, cysteine-rich domain
TCR	PF03638	242 - 276	2.5e-12	Tesmin/TSO1-like CXC domain, cysteine-rich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35890 FvH4_2g35890 FvH4_2g35890 FvH4_2g35890
malus_domestica	MD08G1116500.v1.1 MD15G1096100.v1.1
prunus_persica	Prupe.1G451000_v2.0.a1 Prupe.1G451000_v2.0.a1
pyrus_communis	pycom08g09710 pycom15g08830
rosa_chinensis	RchiOBHm_Chr6g0305931
rosa_laevigata	RLG00000010845
rosa_multiflora	Rmu_sc0001809.1_g000050 Rmu_sc0039000.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162210
rosa_rugosa	Rorug06G0345400
rosa_samantha	Rh6AG457000 Rh6AG457100 Rh6BG444300 Rh6CG470900 Rh6DG457600
rosa_wichuraiana	Rw6G039870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	393, 1329
AccB1I	GGYRCC	3 cut(s)	31, 67, 504
AccBSI	CCGCTC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	1414
AccII	CGCG	2 cut(s)	438, 684
AciI	CCGC	7 cut(s)	106, 119, 122, 155, 163, 332, 611
AclWI	GGATC	5 cut(s)	921, 934, 1126, 1188, 1393
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	2 cut(s)	496, 540
AcuI	CTGAAG	2 cut(s)	1769, 1830
AcyI	GRCGYC	2 cut(s)	32, 68
AfaI	GTAC	6 cut(s)	28, 132, 463, 518, 764, 1096
AfiI	CCNNNNNNNGG	4 cut(s)	380, 410, 915, 1091
AflII	CTTAAG	1 cut(s)	1045
AgsI	TTSAA	5 cut(s)	128, 713, 1125, 1767, 1828
AjiI	CACGTC	1 cut(s)	1193
AjnI	CCWGG	3 cut(s)	945, 1426, 1715
AjuI	GAANNNNNNNTTGG	2 cut(s)	771, 803
AluBI	AGCT	9 cut(s)	202, 208, 247, 481, 536, 596, 1217, 1478, 1483
AluI	AGCT	9 cut(s)	202, 208, 247, 481, 536, 596, 1217, 1478, 1483
Alw26I	GTCTC	3 cut(s)	429, 758, 1810
AlwI	GGATC	5 cut(s)	921, 934, 1126, 1188, 1393
AlwNI	CAGNNNCTG	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	1284
AoxI	GGCC	6 cut(s)	353, 362, 382, 918, 941, 1059
ApaI	GGGCCC	1 cut(s)	945
ApoI	RAATTY	2 cut(s)	496, 540
AspLEI	GCGC	6 cut(s)	34, 70, 169, 394, 440, 1330
AspS9I	GGNCC	5 cut(s)	113, 362, 918, 941, 942
AsuHPI	GGTGA	2 cut(s)	1004, 1346
AsuNHI	GCTAGC	1 cut(s)	662
AvaI	CYCGRG	1 cut(s)	1284
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	945
BamHI	GGATCC	1 cut(s)	926
BanI	GGYRCC	3 cut(s)	31, 67, 504
BanII	GRGCYC	1 cut(s)	945
BauI	CACGAG	2 cut(s)	419, 1620
BccI	CCATC	5 cut(s)	827, 1280, 1361, 1385, 1537
BceAI	ACGGC	6 cut(s)	45, 64, 81, 169, 301, 397
BciT130I	CCWGG	3 cut(s)	947, 1428, 1717
BcoDI	GTCTC	3 cut(s)	429, 758, 1810
BfaI	CTAG	2 cut(s)	600, 663
BfmI	CTRYAG	4 cut(s)	203, 209, 1107, 1689
BfoI	RGCGCY	2 cut(s)	35, 71
BfrI	CTTAAG	1 cut(s)	1045
BglI	GCCNNNNNGGC	1 cut(s)	361
BglII	AGATCT	1 cut(s)	1139
BlpI	GCTNAGC	2 cut(s)	1029, 1479
BmcAI	AGTACT	2 cut(s)	463, 764
Bme1390I	CCNGG	3 cut(s)	947, 1428, 1717
Bme18I	GGWCC	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	1284
BmgBI	CACGTC	1 cut(s)	1193
BmgT120I	GGNCC	5 cut(s)	113, 362, 918, 941, 942
BmrFI	CCNGG	3 cut(s)	947, 1428, 1717
BmrI	ACTGGG	1 cut(s)	1848
BmsI	GCATC	6 cut(s)	166, 178, 360, 545, 598, 688
BmtI	GCTAGC	1 cut(s)	666
BmuI	ACTGGG	1 cut(s)	1848
BoxI	GACNNNNGTC	1 cut(s)	1420
BplI	GAGNNNNNCTC	2 cut(s)	1566, 1598
Bpu1102I	GCTNAGC	2 cut(s)	1029, 1479
BpuEI	CTTGAG	2 cut(s)	494, 740
BsaHI	GRCGYC	2 cut(s)	32, 68
BsaJI	CCNNGG	4 cut(s)	185, 945, 1426, 1715
BsaWI	WCCGGW	2 cut(s)	23, 1014
BsaXI	ACNNNNNCTCC	2 cut(s)	1386, 1416
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 410, 915, 1091
Bse118I	RCCGGY	4 cut(s)	70, 115, 259, 355
Bse1I	ACTGG	1 cut(s)	1843
Bse3DI	GCAATG	1 cut(s)	1747
BseBI	CCWGG	3 cut(s)	947, 1428, 1717
BseDI	CCNNGG	4 cut(s)	185, 945, 1426, 1715
BseGI	GGATG	5 cut(s)	169, 560, 613, 734, 1158
BseLI	CCNNNNNNNGG	4 cut(s)	380, 410, 915, 1091
BseMI	GCAATG	1 cut(s)	1747
BseMII	CTCAG	6 cut(s)	1043, 1158, 1290, 1470, 1535, 1547
BseNI	ACTGG	1 cut(s)	1843
BseSI	GKGCMC	1 cut(s)	945
BseX3I	CGGCCG	1 cut(s)	382
BseYI	CCCAGC	1 cut(s)	701
Bsh1236I	CGCG	2 cut(s)	438, 684
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	6 cut(s)	355, 364, 384, 920, 943, 1061
BshNI	GGYRCC	3 cut(s)	31, 67, 504
BsiEI	CGRYCG	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	1284
BsiSI	CCGG	8 cut(s)	24, 71, 101, 116, 260, 356, 385, 1015
BslFI	GGGAC	2 cut(s)	307, 1408
BslI	CCNNNNNNNGG	4 cut(s)	380, 410, 915, 1091
BsmAI	GTCTC	3 cut(s)	429, 758, 1810
BsmFI	GGGAC	2 cut(s)	307, 1408
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	6 cut(s)	355, 364, 384, 920, 943, 1061
BsoBI	CYCGRG	1 cut(s)	1284
Bsp120I	GGGCCC	1 cut(s)	941
Bsp1286I	GDGCHC	1 cut(s)	945
Bsp143I	GATC	8 cut(s)	868, 926, 1000, 1118, 1139, 1180, 1315, 1385
Bsp1720I	GCTNAGC	2 cut(s)	1029, 1479
Bsp68I	TCGCGA	1 cut(s)	684
BspACI	CCGC	7 cut(s)	106, 119, 122, 155, 163, 332, 611
BspANI	GGCC	6 cut(s)	355, 364, 384, 920, 943, 1061
BspCNI	CTCAG	6 cut(s)	1042, 1159, 1289, 1471, 1534, 1546
BspFNI	CGCG	2 cut(s)	438, 684
BspHI	TCATGA	1 cut(s)	862
BspMAI	CTGCAG	1 cut(s)	1111
BspOI	GCTAGC	1 cut(s)	666
BspPI	GGATC	5 cut(s)	921, 934, 1126, 1188, 1393
BspQI	GCTCTTC	1 cut(s)	1557
BspT107I	GGYRCC	3 cut(s)	31, 67, 504
BspTI	CTTAAG	1 cut(s)	1045
BsrBI	CCGCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	1747
BsrFI	RCCGGY	4 cut(s)	70, 115, 259, 355
BsrI	ACTGG	1 cut(s)	1843
BssAI	RCCGGY	4 cut(s)	70, 115, 259, 355
BssECI	CCNNGG	4 cut(s)	185, 945, 1426, 1715
BssMI	GATC	8 cut(s)	868, 926, 1000, 1118, 1139, 1180, 1315, 1385
BssNI	GRCGYC	2 cut(s)	32, 68
BssSI	CACGAG	2 cut(s)	419, 1620
Bst2BI	CACGAG	2 cut(s)	419, 1620
Bst2UI	CCWGG	3 cut(s)	947, 1428, 1717
Bst6I	CTCTTC	2 cut(s)	1069, 1557
BstACI	GRCGYC	2 cut(s)	32, 68
BstAFI	CTTAAG	1 cut(s)	1045
BstAPI	GCANNNNNTGC	2 cut(s)	819, 905
BstC8I	GCNNGC	6 cut(s)	165, 261, 330, 442, 664, 736
BstDEI	CTNAG	7 cut(s)	36, 1029, 1167, 1276, 1479, 1521, 1533
BstDSI	CCRYGG	1 cut(s)	185
BstEII	GGTNACC	1 cut(s)	1334
BstF5I	GGATG	5 cut(s)	169, 560, 613, 734, 1158
BstFNI	CGCG	2 cut(s)	438, 684
BstH2I	RGCGCY	2 cut(s)	35, 71
BstHHI	GCGC	6 cut(s)	34, 70, 169, 394, 440, 1330
BstKTI	GATC	8 cut(s)	871, 929, 1003, 1121, 1142, 1183, 1318, 1388
BstMAI	GTCTC	3 cut(s)	429, 758, 1810
BstMBI	GATC	8 cut(s)	868, 926, 1000, 1118, 1139, 1180, 1315, 1385
BstMCI	CGRYCG	1 cut(s)	385
BstNI	CCWGG	3 cut(s)	947, 1428, 1717
BstNSI	RCATGY	1 cut(s)	892
BstPAI	GACNNNNGTC	1 cut(s)	1420
BstPI	GGTNACC	1 cut(s)	1334
BstSCI	CCNGG	3 cut(s)	945, 1426, 1715
BstSFI	CTRYAG	4 cut(s)	203, 209, 1107, 1689
BstSLI	GKGCMC	1 cut(s)	945
BstUI	CGCG	2 cut(s)	438, 684
BstX2I	RGATCY	4 cut(s)	926, 1118, 1139, 1180
BstYI	RGATCY	4 cut(s)	926, 1118, 1139, 1180
BstZI	CGGCCG	1 cut(s)	382
BsuRI	GGCC	6 cut(s)	355, 364, 384, 920, 943, 1061
BtgI	CCRYGG	1 cut(s)	185
BtgZI	GCGATG	2 cut(s)	984, 1413
BtrI	CACGTC	1 cut(s)	1193
BtsCI	GGATG	5 cut(s)	169, 560, 613, 734, 1158
BtsI	GCAGTG	1 cut(s)	1381
BtsIMutI	CAGTG	1 cut(s)	1381
BtuMI	TCGCGA	1 cut(s)	684
Cac8I	GCNNGC	6 cut(s)	165, 261, 330, 442, 664, 736
CaiI	CAGNNNCTG	1 cut(s)	247
CciI	TCATGA	1 cut(s)	862
CfoI	GCGC	6 cut(s)	34, 70, 169, 394, 440, 1330
Cfr10I	RCCGGY	4 cut(s)	70, 115, 259, 355
Cfr13I	GGNCC	5 cut(s)	113, 362, 918, 941, 942
CseI	GACGC	2 cut(s)	187, 334
Csp6I	GTAC	6 cut(s)	27, 131, 462, 517, 763, 1095
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	5 cut(s)	674, 814, 863, 889, 1331
CviQI	GTAC	6 cut(s)	27, 131, 462, 517, 763, 1095
DdeI	CTNAG	7 cut(s)	36, 1029, 1167, 1276, 1479, 1521, 1533
DinI	GGCGCC	2 cut(s)	33, 69
DpnI	GATC	8 cut(s)	870, 928, 1002, 1120, 1141, 1182, 1317, 1387
DpnII	GATC	8 cut(s)	868, 926, 1000, 1118, 1139, 1180, 1315, 1385
EaeI	YGGCCR	1 cut(s)	382
EagI	CGGCCG	1 cut(s)	382
Eam1104I	CTCTTC	2 cut(s)	1069, 1557
EarI	CTCTTC	2 cut(s)	1069, 1557
EclXI	CGGCCG	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	945
Eco47I	GGWCC	1 cut(s)	113
Eco52I	CGGCCG	1 cut(s)	382
Eco57I	CTGAAG	2 cut(s)	1769, 1830
Eco88I	CYCGRG	1 cut(s)	1284
Eco91I	GGTNACC	1 cut(s)	1334
EcoO109I	RGGNCCY	1 cut(s)	942
EcoO65I	GGTNACC	1 cut(s)	1334
EcoRII	CCWGG	3 cut(s)	945, 1426, 1715
EcoT22I	ATGCAT	1 cut(s)	815
EcoT38I	GRGCYC	1 cut(s)	945
EgeI	GGCGCC	2 cut(s)	33, 69
EheI	GGCGCC	2 cut(s)	33, 69
FaeI	CATG	5 cut(s)	677, 817, 866, 892, 1334
FaqI	GGGAC	2 cut(s)	307, 1408
FatI	CATG	5 cut(s)	673, 813, 862, 888, 1330
FauI	CCCGC	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	1414
FokI	GGATG	5 cut(s)	156, 567, 620, 741, 1145
FriOI	GRGCYC	1 cut(s)	945
FspAI	RTGCGCAY	1 cut(s)	1329
FspBI	CTAG	2 cut(s)	600, 663
FspI	TGCGCA	2 cut(s)	393, 1329
GlaI	GCGC	6 cut(s)	33, 69, 168, 393, 439, 1329
GsaI	CCCAGC	1 cut(s)	705
HaeII	RGCGCY	2 cut(s)	35, 71
HaeIII	GGCC	6 cut(s)	355, 364, 384, 920, 943, 1061
HapII	CCGG	8 cut(s)	24, 71, 101, 116, 260, 356, 385, 1015
HgaI	GACGC	2 cut(s)	187, 334
HhaI	GCGC	6 cut(s)	34, 70, 169, 394, 440, 1330
Hin1I	GRCGYC	2 cut(s)	32, 68
Hin1II	CATG	5 cut(s)	677, 817, 866, 892, 1334
Hin6I	GCGC	6 cut(s)	32, 68, 167, 392, 438, 1328
HinP1I	GCGC	6 cut(s)	32, 68, 167, 392, 438, 1328
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	7 cut(s)	422, 677, 686, 1351, 1525, 1590, 1685
HpaI	GTTAAC	1 cut(s)	88
HpaII	CCGG	8 cut(s)	24, 71, 101, 116, 260, 356, 385, 1015
HphI	GGTGA	2 cut(s)	1004, 1346
Hpy166II	GTNNAC	7 cut(s)	88, 379, 586, 671, 1012, 1190, 1415
Hpy188I	TCNGA	5 cut(s)	650, 799, 1390, 1524, 1810
Hpy8I	GTNNAC	7 cut(s)	88, 379, 586, 671, 1012, 1190, 1415
Hpy99I	CGWCG	1 cut(s)	370
HpyAV	CCTTC	2 cut(s)	843, 1619
HpyCH4IV	ACGT	1 cut(s)	1192
HpyF3I	CTNAG	7 cut(s)	36, 1029, 1167, 1276, 1479, 1521, 1533
HpySE526I	ACGT	1 cut(s)	1192
Hsp92I	GRCGYC	2 cut(s)	32, 68
Hsp92II	CATG	5 cut(s)	677, 817, 866, 892, 1334
HspAI	GCGC	6 cut(s)	32, 68, 167, 392, 438, 1328
KasI	GGCGCC	2 cut(s)	31, 67
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	8 cut(s)	868, 926, 1000, 1118, 1139, 1180, 1315, 1385
LguI	GCTCTTC	1 cut(s)	1557
LmnI	GCTCC	4 cut(s)	4, 103, 617, 992
LweI	GCATC	6 cut(s)	166, 178, 360, 545, 598, 688
MaeI	CTAG	2 cut(s)	600, 663
MaeII	ACGT	1 cut(s)	1192
MalI	GATC	8 cut(s)	870, 928, 1002, 1120, 1141, 1182, 1317, 1387
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	8 cut(s)	868, 926, 1000, 1118, 1139, 1180, 1315, 1385
MboII	GAAGA	7 cut(s)	707, 854, 878, 1056, 1059, 1113, 1574
MfeI	CAATTG	2 cut(s)	53, 487
MflI	RGATCY	4 cut(s)	926, 1118, 1139, 1180
MhlI	GDGCHC	1 cut(s)	945
MluCI	AATT	9 cut(s)	41, 53, 407, 487, 496, 540, 568, 621, 1321
Mly113I	GGCGCC	2 cut(s)	32, 68
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	3 cut(s)	595, 1186, 1795
Mph1103I	ATGCAT	1 cut(s)	815
MroNI	GCCGGC	1 cut(s)	259
MseI	TTAA	2 cut(s)	87, 1046
MslI	CAYNNNNRTG	1 cut(s)	579
MspA1I	CMGCKG	3 cut(s)	247, 536, 1478
MspCI	CTTAAG	1 cut(s)	1045
MspI	CCGG	8 cut(s)	24, 71, 101, 116, 260, 356, 385, 1015
MspR9I	CCNGG	3 cut(s)	947, 1428, 1717
MunI	CAATTG	2 cut(s)	53, 487
Mva1269I	GAATGC	1 cut(s)	644
MvaI	CCWGG	3 cut(s)	947, 1428, 1717
MvnI	CGCG	2 cut(s)	438, 684
NaeI	GCCGGC	1 cut(s)	261
NarI	GGCGCC	2 cut(s)	32, 68
NdeII	GATC	8 cut(s)	868, 926, 1000, 1118, 1139, 1180, 1315, 1385
NgoMIV	GCCGGC	1 cut(s)	259
NheI	GCTAGC	1 cut(s)	662
NlaIII	CATG	5 cut(s)	677, 817, 866, 892, 1334
NmuCI	GTSAC	8 cut(s)	189, 213, 219, 225, 231, 279, 1334, 1795
NruI	TCGCGA	1 cut(s)	684
NsbI	TGCGCA	2 cut(s)	393, 1329
NsiI	ATGCAT	1 cut(s)	815
NspI	RCATGY	1 cut(s)	892
PaeR7I	CTCGAG	1 cut(s)	1284
PagI	TCATGA	1 cut(s)	862
PciSI	GCTCTTC	1 cut(s)	1557
PcsI	WCGNNNNNNNCGW	1 cut(s)	314
PctI	GAATGC	1 cut(s)	644
PdiI	GCCGGC	1 cut(s)	261
PfeI	GAWTC	6 cut(s)	677, 686, 1351, 1525, 1590, 1685
PleI	GAGTC	1 cut(s)	430
PluTI	GGCGCC	2 cut(s)	35, 71
PpsI	GAGTC	1 cut(s)	430
PshAI	GACNNNNGTC	1 cut(s)	1420
Psp6I	CCWGG	3 cut(s)	945, 1426, 1715
PspEI	GGTNACC	1 cut(s)	1334
PspFI	CCCAGC	1 cut(s)	701
PspGI	CCWGG	3 cut(s)	945, 1426, 1715
PspOMI	GGGCCC	1 cut(s)	941
PspPI	GGNCC	5 cut(s)	113, 362, 918, 941, 942
PstI	CTGCAG	1 cut(s)	1111
PstNI	CAGNNNCTG	1 cut(s)	247
PsuI	RGATCY	4 cut(s)	926, 1118, 1139, 1180
PvuII	CAGCTG	3 cut(s)	247, 536, 1478
RruI	TCGCGA	1 cut(s)	684
RsaI	GTAC	6 cut(s)	28, 132, 463, 518, 764, 1096
RsaNI	GTAC	6 cut(s)	27, 131, 462, 517, 763, 1095
RseI	CAYNNNNRTG	1 cut(s)	579
SapI	GCTCTTC	1 cut(s)	1557
SaqAI	TTAA	2 cut(s)	87, 1046
Sau3AI	GATC	8 cut(s)	868, 926, 1000, 1118, 1139, 1180, 1315, 1385
Sau96I	GGNCC	5 cut(s)	113, 362, 918, 941, 942
ScaI	AGTACT	2 cut(s)	463, 764
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	3 cut(s)	947, 1428, 1717
SduI	GDGCHC	1 cut(s)	945
SfaNI	GCATC	6 cut(s)	166, 178, 360, 545, 598, 688
SfcI	CTRYAG	4 cut(s)	203, 209, 1107, 1689
SfiI	GGCCNNNNNGGCC	1 cut(s)	361
SfoI	GGCGCC	2 cut(s)	33, 69
Sfr274I	CTCGAG	1 cut(s)	1284
SinI	GGWCC	1 cut(s)	113
SlaI	CTCGAG	1 cut(s)	1284
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	4 cut(s)	509, 755, 1045, 1284
SmoI	CTYRAG	4 cut(s)	509, 755, 1045, 1284
Sse9I	AATT	9 cut(s)	41, 53, 407, 487, 496, 540, 568, 621, 1321
SsiI	CCGC	7 cut(s)	106, 119, 122, 155, 163, 332, 611
SspDI	GGCGCC	2 cut(s)	31, 67
SspMI	CTAG	2 cut(s)	600, 663
StyD4I	CCNGG	3 cut(s)	945, 1426, 1715
TaiI	ACGT	1 cut(s)	1195
TaqI	TCGA	1 cut(s)	1285
TaqII	GACCGA	1 cut(s)	979
TasI	AATT	9 cut(s)	41, 53, 407, 487, 496, 540, 568, 621, 1321
TatI	WGTACW	4 cut(s)	130, 461, 516, 762
TauI	GCSGC	2 cut(s)	122, 157
TfiI	GAWTC	6 cut(s)	677, 686, 1351, 1525, 1590, 1685
Tru1I	TTAA	2 cut(s)	87, 1046
Tru9I	TTAA	2 cut(s)	87, 1046
TscAI	CASTG	1 cut(s)	1381
TseFI	GTSAC	8 cut(s)	189, 213, 219, 225, 231, 279, 1334, 1795
Tsp45I	GTSAC	8 cut(s)	189, 213, 219, 225, 231, 279, 1334, 1795
TspDTI	ATGAA	8 cut(s)	606, 690, 851, 879, 987, 1364, 1467, 1575
TspGWI	ACGGA	2 cut(s)	73, 1565
TspRI	CASTG	1 cut(s)	1381
Vha464I	CTTAAG	1 cut(s)	1045
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	2 cut(s)	496, 540
XceI	RCATGY	1 cut(s)	892
XhoI	CTCGAG	1 cut(s)	1284
XmiI	GTMKAC	1 cut(s)	1414
XspI	CTAG	2 cut(s)	600, 663
ZrmI	AGTACT	2 cut(s)	463, 764
Zsp2I	ATGCAT	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.