Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039000.1

Orthogroup ID

OG0009660

Physical Location & Seq

Genomic Coordinates Reverse (-)

232 .. 1677

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039000.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgtttggccatttggtaggtactgatgctgttggagcaattttagagcgtaacccaaaagcattcagaccaaagattgctagcagtccacatgaatctcgcgattcttgggaagatgctggggaggttcaaaagcaccacaaaggatgtgcttgcaggaagtctgggtgtctcaagaagtactgtgagtgcttccaagccaatgttctgtgttctgaaaactgtaaatgcatggactgcaagaactttgatggaagtgaagaaagaagggctatctttcatgaagatcacaatacgatagccaacatgcaacaggcaaatgccgccattagtggggccattggatcctctgggtttgggcctctagtgtccagacaaagaccgagcgatgaacttttttctggcattgccagagatcaatcagttcaccggattacacaggctcagcaggaaaatcacttaagacctcctatggcctcttcttctctgttatctgttcctacttttggtactcctaatgctgcagtatcaggatcttcaaaacccacatacagatctatgttggcaaatatcatccaacctgagaacataaaggatctgtgttcacgtctggttgtagtttcaggagaagctgcaaaggcacttgcaggtttggttatatacagacctccatctttcttttctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

229

Amino Acids

24.81

Weight (kDa)

8.53

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35890 FvH4_2g35890 FvH4_2g35890 FvH4_2g35890
malus_domestica	MD08G1116500.v1.1 MD15G1096100.v1.1
prunus_persica	Prupe.1G451000_v2.0.a1 Prupe.1G451000_v2.0.a1
pyrus_communis	pycom08g09710 pycom15g08830
rosa_chinensis	RchiOBHm_Chr6g0305931
rosa_laevigata	RLG00000010845
rosa_multiflora	Rmu_sc0001809.1_g000050 Rmu_sc0039000.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162210
rosa_rugosa	Rorug06G0345400
rosa_samantha	Rh6AG457000 Rh6AG457100 Rh6BG444300 Rh6CG470900 Rh6DG457600
rosa_wichuraiana	Rw6G039870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	638
AccII	CGCG	1 cut(s)	102
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	4 cut(s)	339, 352, 541, 603
AcoI	YGGCCR	1 cut(s)	7
AfaI	GTAC	3 cut(s)	22, 182, 511
AfiI	CCNNNNNNNGG	2 cut(s)	333, 506
AflII	CTTAAG	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	131, 540
AjiI	CACGTC	1 cut(s)	608
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	1 cut(s)	632
AluI	AGCT	1 cut(s)	632
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	4 cut(s)	339, 352, 541, 603
AoxI	GGCC	4 cut(s)	7, 336, 359, 474
ApeKI	GCWGC	2 cut(s)	521, 632
AspS9I	GGNCC	2 cut(s)	336, 359
AsuHPI	GGTGA	1 cut(s)	419
AsuNHI	GCTAGC	1 cut(s)	80
BalI	TGGCCA	1 cut(s)	9
BamHI	GGATCC	1 cut(s)	344
BbvI	GCAGC	2 cut(s)	508, 619
BccI	CCATC	2 cut(s)	245, 679
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	2 cut(s)	81, 365
BfmI	CTRYAG	1 cut(s)	522
BfrI	CTTAAG	1 cut(s)	460
BfuAI	ACCTGC	1 cut(s)	638
BglII	AGATCT	1 cut(s)	554
BisI	GCNGC	3 cut(s)	324, 522, 633
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	3 cut(s)	325, 523, 634
BmcAI	AGTACT	1 cut(s)	182
BmgBI	CACGTC	1 cut(s)	608
BmgT120I	GGNCC	2 cut(s)	336, 359
BmiI	GGNNCC	2 cut(s)	337, 346
BmsI	GCATC	2 cut(s)	16, 106
BmtI	GCTAGC	1 cut(s)	84
Bpu1102I	GCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 506
Bse3DI	GCAATG	1 cut(s)	405
BseGI	GGATG	2 cut(s)	152, 573
BseLI	CCNNNNNNNGG	2 cut(s)	333, 506
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	458, 573
BseXI	GCAGC	2 cut(s)	508, 619
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	4 cut(s)	9, 338, 361, 476
BsiSI	CCGG	1 cut(s)	430
BslI	CCNNNNNNNGG	2 cut(s)	333, 506
BsmAI	GTCTC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	62
BsnI	GGCC	4 cut(s)	9, 338, 361, 476
Bsp143I	GATC	6 cut(s)	286, 344, 415, 533, 554, 595
Bsp1720I	GCTNAGC	1 cut(s)	444
Bsp68I	TCGCGA	1 cut(s)	102
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	4 cut(s)	9, 338, 361, 476
BspCNI	CTCAG	2 cut(s)	457, 574
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	337, 346
BspMAI	CTGCAG	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	638
BspOI	GCTAGC	1 cut(s)	84
BspPI	GGATC	4 cut(s)	339, 352, 541, 603
BspTI	CTTAAG	1 cut(s)	460
BsrDI	GCAATG	1 cut(s)	405
BssMI	GATC	6 cut(s)	286, 344, 415, 533, 554, 595
Bst4CI	ACNGT	2 cut(s)	185, 224
Bst6I	CTCTTC	1 cut(s)	484
BstAFI	CTTAAG	1 cut(s)	460
BstAPI	GCANNNNNTGC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	82, 154
BstDEI	CTNAG	2 cut(s)	444, 582
BstF5I	GGATG	2 cut(s)	152, 573
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	6 cut(s)	289, 347, 418, 536, 557, 598
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	6 cut(s)	286, 344, 415, 533, 554, 595
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 237, 323, 638
BstNSI	RCATGY	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	522
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	508, 619
BstX2I	RGATCY	4 cut(s)	344, 533, 554, 595
BstYI	RGATCY	4 cut(s)	344, 533, 554, 595
BsuRI	GGCC	4 cut(s)	9, 338, 361, 476
BtgZI	GCGATG	1 cut(s)	402
BtrI	CACGTC	1 cut(s)	608
BtsCI	GGATG	2 cut(s)	152, 573
BtuMI	TCGCGA	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	638
Cac8I	GCNNGC	2 cut(s)	82, 154
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	336, 359
Csp6I	GTAC	3 cut(s)	21, 181, 510
CviAII	CATG	5 cut(s)	92, 232, 281, 307, 687
CviJI	RGCY	9 cut(s)	9, 200, 272, 302, 338, 361, 443, 476, 632
CviKI_1	RGCY	9 cut(s)	9, 200, 272, 302, 338, 361, 443, 476, 632
CviQI	GTAC	3 cut(s)	21, 181, 510
DdeI	CTNAG	2 cut(s)	444, 582
DpnI	GATC	6 cut(s)	288, 346, 417, 535, 556, 597
DpnII	GATC	6 cut(s)	286, 344, 415, 533, 554, 595
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
EcoT22I	ATGCAT	1 cut(s)	233
FaeI	CATG	5 cut(s)	95, 235, 284, 310, 690
FatI	CATG	5 cut(s)	91, 231, 280, 306, 686
Fnu4HI	GCNGC	3 cut(s)	324, 522, 633
FokI	GGATG	2 cut(s)	159, 560
Fsp4HI	GCNGC	3 cut(s)	324, 522, 633
FspBI	CTAG	2 cut(s)	81, 365
GluI	GCNGC	3 cut(s)	324, 522, 633
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	9, 338, 361, 476
HapII	CCGG	1 cut(s)	430
Hin1II	CATG	5 cut(s)	95, 235, 284, 310, 690
HinfI	GANTC	2 cut(s)	95, 104
HpaII	CCGG	1 cut(s)	430
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	3 cut(s)	89, 427, 605
Hpy188I	TCNGA	2 cut(s)	68, 217
Hpy188III	TCNNGA	6 cut(s)	101, 175, 281, 372, 531, 624
Hpy8I	GTNNAC	3 cut(s)	89, 427, 605
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	2 cut(s)	185, 224
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	8 cut(s)	156, 231, 240, 310, 524, 635, 647, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 237, 323, 638
HpyF3I	CTNAG	2 cut(s)	444, 582
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	5 cut(s)	95, 235, 284, 310, 690
Kzo9I	GATC	6 cut(s)	286, 344, 415, 533, 554, 595
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	2 cut(s)	508, 619
LweI	GCATC	2 cut(s)	16, 106
MaeI	CTAG	2 cut(s)	81, 365
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	6 cut(s)	288, 346, 417, 535, 556, 597
MboI	GATC	6 cut(s)	286, 344, 415, 533, 554, 595
MboII	GAAGA	6 cut(s)	125, 272, 296, 471, 474, 528
MflI	RGATCY	4 cut(s)	344, 533, 554, 595
MlsI	TGGCCA	1 cut(s)	9
MluCI	AATT	1 cut(s)	39
MluNI	TGGCCA	1 cut(s)	9
MmeI	TCCRAC	2 cut(s)	13, 601
MnlI	CCTC	6 cut(s)	118, 358, 372, 477, 487, 678
Mox20I	TGGCCA	1 cut(s)	9
Mph1103I	ATGCAT	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	9
MseI	TTAA	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	9
MspCI	CTTAAG	1 cut(s)	460
MspI	CCGG	1 cut(s)	430
Mva1269I	GAATGC	1 cut(s)	62
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	4 cut(s)	35, 237, 323, 638
NdeII	GATC	6 cut(s)	286, 344, 415, 533, 554, 595
NheI	GCTAGC	1 cut(s)	80
NlaIII	CATG	5 cut(s)	95, 235, 284, 310, 690
NlaIV	GGNNCC	2 cut(s)	337, 346
NruI	TCGCGA	1 cut(s)	102
NsiI	ATGCAT	1 cut(s)	233
NspI	RCATGY	1 cut(s)	310
PagI	TCATGA	1 cut(s)	280
PctI	GAATGC	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	95, 104
PkrI	GCNGC	3 cut(s)	325, 523, 634
PspFI	CCCAGC	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	337, 346
PspPI	GGNCC	2 cut(s)	336, 359
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	4 cut(s)	344, 533, 554, 595
RruI	TCGCGA	1 cut(s)	102
RsaI	GTAC	3 cut(s)	22, 182, 511
RsaNI	GTAC	3 cut(s)	21, 181, 510
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	3 cut(s)	324, 522, 633
Sau3AI	GATC	6 cut(s)	286, 344, 415, 533, 554, 595
Sau96I	GGNCC	2 cut(s)	336, 359
ScaI	AGTACT	1 cut(s)	182
SetI	ASST	8 cut(s)	22, 129, 469, 583, 610, 634, 652, 670
SfaNI	GCATC	2 cut(s)	16, 106
SfcI	CTRYAG	1 cut(s)	522
SmlI	CTYRAG	2 cut(s)	173, 460
SmoI	CTYRAG	2 cut(s)	173, 460
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	324
SspMI	CTAG	2 cut(s)	81, 365
TaaI	ACNGT	2 cut(s)	185, 224
TaiI	ACGT	1 cut(s)	610
TaqII	GACCGA	1 cut(s)	397
TasI	AATT	1 cut(s)	39
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	2 cut(s)	95, 104
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TseI	GCWGC	2 cut(s)	521, 632
TspDTI	ATGAA	4 cut(s)	108, 269, 297, 405
Vha464I	CTTAAG	1 cut(s)	460
XceI	RCATGY	1 cut(s)	310
XspI	CTAG	2 cut(s)	81, 365
ZrmI	AGTACT	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.