Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009660

Physical Location & Seq

Genomic Coordinates Reverse (-)

64092560 .. 64094618

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG457000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCCTCTTCTTCTCTGTTATCTGTTCCTACTTTTGGTACTCCTAATACTGCAGTATCAGGATCTTCAAAACCCACATACAGATCTATGTTGGCAAATATCATCCAACCTGAGAACATAAAGGATCTGTGTTCACGTCTGGTTGTAGTTTCAGGAGAAGCTGCAAAGGCACTTGCAGAAAATAGGCAAAAAGAGATGATTGATAAGACTACTACCATCTCAGCCACTCGAGAGGGGAAAGAAAGTAAAAGGGAACAAGTTCAAAATCTTGCGCATGGTGACCGTTTGGGAATGAATCAAGCAGATAGAGATGGCAGCAGTGGTTCTGGATCAGATGGAGGCGATGTGCAAAATAGTAGGCCAATGTCCCCTGGAACACTTGCCCTGATGTGTGATGAACAAGATAAGATGTTTATGGCAGCTGAGCTGCCAAATGGGATAACAACGAATAGTCAAAGCACAACTCAGAATCCATCTCAGGAAATAGGTTGCACGGAGGTTTATGAAGAGCAGGAAAGAGTTATCCTCACAGGATTCAGGGATTTCCTAAACCTGCTTATTACTCGTGGTAGTATAAAAGAAACAATGTGTTCTCCCATAGCCAAAAGGGAGAGGGAAATCCAAAAGGATTCTGTAGAAGGTGGAACCCCAAAGAAACCCAGGTGCGAGAAAGCAACATACAGCAATGACATTGGGAAATCTCCTGCTTCAACAAATGGTAAAGTGCTTCAGTCAGTAGTCACTTATGTCTCTGAAGTTGGATTGCCCTTGAAAAATAATACTGGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

263

Amino Acids

28.33

Weight (kDa)

6.03

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35890 FvH4_2g35890 FvH4_2g35890 FvH4_2g35890
malus_domestica	MD08G1116500.v1.1 MD15G1096100.v1.1
prunus_persica	Prupe.1G451000_v2.0.a1 Prupe.1G451000_v2.0.a1
pyrus_communis	pycom08g09710 pycom15g08830
rosa_chinensis	RchiOBHm_Chr6g0305931
rosa_laevigata	RLG00000010845
rosa_multiflora	Rmu_sc0001809.1_g000050 Rmu_sc0039000.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162210
rosa_rugosa	Rorug06G0345400
rosa_samantha	Rh6AG457000 Rh6AG457100 Rh6BG444300 Rh6CG470900 Rh6DG457600
rosa_wichuraiana	Rw6G039870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	273
Acc36I	ACCTGC	1 cut(s)	561
AclWI	GGATC	3 cut(s)	70, 132, 337
AcuI	CTGAAG	2 cut(s)	713, 774
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	4 cut(s)	69, 263, 711, 772
AjiI	CACGTC	1 cut(s)	137
AjnI	CCWGG	2 cut(s)	370, 659
AluBI	AGCT	3 cut(s)	161, 422, 427
AluI	AGCT	3 cut(s)	161, 422, 427
Alw26I	GTCTC	1 cut(s)	754
AlwI	GGATC	3 cut(s)	70, 132, 337
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	2 cut(s)	3, 359
ApeKI	GCWGC	4 cut(s)	161, 315, 419, 427
Asp700I	GAANNNNTTC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	228
BaeI	ACNNNNGTAYC	2 cut(s)	39, 72
BauI	CACGAG	1 cut(s)	564
BbvI	GCAGC	4 cut(s)	148, 327, 414, 431
BccI	CCATC	4 cut(s)	224, 305, 329, 481
BciT130I	CCWGG	2 cut(s)	372, 661
BcoDI	GTCTC	1 cut(s)	754
BfmI	CTRYAG	2 cut(s)	51, 633
BfuAI	ACCTGC	1 cut(s)	561
BglII	AGATCT	1 cut(s)	83
BisI	GCNGC	4 cut(s)	162, 316, 420, 428
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	4 cut(s)	163, 317, 421, 429
Bme1390I	CCNGG	2 cut(s)	372, 661
BmeT110I	CYCGRG	1 cut(s)	228
BmgBI	CACGTC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	646
BmrFI	CCNGG	2 cut(s)	372, 661
BmrI	ACTGGG	1 cut(s)	792
BmuI	ACTGGG	1 cut(s)	792
BplI	GAGNNNNNCTC	2 cut(s)	510, 542
Bpu1102I	GCTNAGC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	370, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	787
Bse3DI	GCAATG	1 cut(s)	691
BseBI	CCWGG	2 cut(s)	372, 661
BseDI	CCNNGG	2 cut(s)	370, 659
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	691
BseMII	CTCAG	5 cut(s)	102, 234, 414, 479, 491
BseNI	ACTGG	1 cut(s)	787
BseXI	GCAGC	4 cut(s)	148, 327, 414, 431
BshFI	GGCC	2 cut(s)	5, 361
BsiHKCI	CYCGRG	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	754
BsmFI	GGGAC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	5, 361
BsoBI	CYCGRG	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	62, 83, 124, 329
Bsp1720I	GCTNAGC	1 cut(s)	423
BspANI	GGCC	2 cut(s)	5, 361
BspCNI	CTCAG	5 cut(s)	103, 233, 415, 478, 490
BspLI	GGNNCC	1 cut(s)	646
BspMAI	CTGCAG	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	561
BspPI	GGATC	3 cut(s)	70, 132, 337
BspQI	GCTCTTC	1 cut(s)	501
BsrDI	GCAATG	1 cut(s)	691
BsrI	ACTGG	1 cut(s)	787
BssECI	CCNNGG	2 cut(s)	370, 659
BssMI	GATC	4 cut(s)	62, 83, 124, 329
BssSI	CACGAG	1 cut(s)	564
Bst2BI	CACGAG	1 cut(s)	564
Bst2UI	CCWGG	2 cut(s)	372, 661
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	13, 501
BstDEI	CTNAG	5 cut(s)	111, 220, 423, 465, 477
BstEII	GGTNACC	1 cut(s)	278
BstF5I	GGATG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	4 cut(s)	65, 86, 127, 332
BstMAI	GTCTC	1 cut(s)	754
BstMBI	GATC	4 cut(s)	62, 83, 124, 329
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	2 cut(s)	372, 661
BstPI	GGTNACC	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	370, 659
BstSFI	CTRYAG	2 cut(s)	51, 633
BstV1I	GCAGC	4 cut(s)	148, 327, 414, 431
BstX2I	RGATCY	3 cut(s)	62, 83, 124
BstYI	RGATCY	3 cut(s)	62, 83, 124
BsuRI	GGCC	2 cut(s)	5, 361
BtgZI	GCGATG	1 cut(s)	357
BtrI	CACGTC	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	325
BveI	ACCTGC	1 cut(s)	561
CfoI	GCGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	7 cut(s)	5, 161, 224, 361, 422, 427, 602
CviKI_1	RGCY	7 cut(s)	5, 161, 224, 361, 422, 427, 602
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	5 cut(s)	111, 220, 423, 465, 477
DpnI	GATC	4 cut(s)	64, 85, 126, 331
DpnII	GATC	4 cut(s)	62, 83, 124, 329
Eam1104I	CTCTTC	2 cut(s)	13, 501
EarI	CTCTTC	2 cut(s)	13, 501
Eco57I	CTGAAG	2 cut(s)	713, 774
Eco88I	CYCGRG	1 cut(s)	228
Eco91I	GGTNACC	1 cut(s)	278
EcoO65I	GGTNACC	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	370, 659
FaeI	CATG	1 cut(s)	278
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	1 cut(s)	274
Fnu4HI	GCNGC	4 cut(s)	162, 316, 420, 428
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	4 cut(s)	162, 316, 420, 428
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	4 cut(s)	162, 316, 420, 428
HaeIII	GGCC	2 cut(s)	5, 361
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	4 cut(s)	295, 469, 534, 629
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	334, 468, 754
Hpy188III	TCNNGA	5 cut(s)	60, 153, 230, 327, 479
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	632
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	5 cut(s)	53, 164, 176, 349, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	5 cut(s)	111, 220, 423, 465, 477
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	4 cut(s)	62, 83, 124, 329
LguI	GCTCTTC	1 cut(s)	501
Lsp1109I	GCAGC	4 cut(s)	148, 327, 414, 431
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	2 cut(s)	278, 739
MalI	GATC	4 cut(s)	64, 85, 126, 331
MboI	GATC	4 cut(s)	62, 83, 124, 329
MboII	GAAGA	3 cut(s)	3, 57, 518
MflI	RGATCY	3 cut(s)	62, 83, 124
MmeI	TCCRAC	2 cut(s)	130, 739
MnlI	CCTC	6 cut(s)	16, 226, 332, 490, 536, 606
MroXI	GAANNNNTTC	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	422
MspR9I	CCNGG	2 cut(s)	372, 661
MvaI	CCWGG	2 cut(s)	372, 661
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	4 cut(s)	62, 83, 124, 329
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	1 cut(s)	646
NmuCI	GTSAC	2 cut(s)	278, 739
NsbI	TGCGCA	1 cut(s)	273
PaeR7I	CTCGAG	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	4 cut(s)	295, 469, 534, 629
PkrI	GCNGC	4 cut(s)	163, 317, 421, 429
Psp6I	CCWGG	2 cut(s)	370, 659
PspEI	GGTNACC	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	370, 659
PspN4I	GGNNCC	1 cut(s)	646
PstI	CTGCAG	1 cut(s)	55
PsuI	RGATCY	3 cut(s)	62, 83, 124
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	501
SatI	GCNGC	4 cut(s)	162, 316, 420, 428
Sau3AI	GATC	4 cut(s)	62, 83, 124, 329
ScrFI	CCNGG	2 cut(s)	372, 661
SfcI	CTRYAG	2 cut(s)	51, 633
Sfr274I	CTCGAG	1 cut(s)	228
SlaI	CTCGAG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	370, 659
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	229
TfiI	GAWTC	4 cut(s)	295, 469, 534, 629
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	2 cut(s)	278, 739
TseI	GCWGC	4 cut(s)	161, 315, 419, 427
Tsp45I	GTSAC	2 cut(s)	278, 739
TspDTI	ATGAA	3 cut(s)	308, 411, 519
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	325
XhoI	CTCGAG	1 cut(s)	228
XmnI	GAANNNNTTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.