Rh6AG457100

Protein tesmin TSO1-like CXC

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
64094963 .. 64097301
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG457100.1

Sequence Viewer

Length: 1053 bp
ATGGAGCAGAGCGAAACGGTTTCCGGTACGGCGCCGAAGAAATTGGCCAGGCAGTTGGATTTCACAGCGCCGGTTCAGCCGTCCGTTTACTCTGCGTTGCCGGAGCGGTCTGGACCGGCGGCGGTTCAAGTTCAGTCGCAGCCACAGCCGCATCTGCGGGCGCATCCACAGACGCAGCCGTGGTCACAGCCACAGCTACAGCTGCAGTCACAGTCACAGCCACAGCAGTTGCATAACTCGCCGGCACAGTTGGCGTTACAGTCACAACAGCAGGGGACGGTGGCGCAATCGCCGAAGCCGTATCTGACGCAGGCGGTCTTGCACTTTCAGGCGAGGCCGGTGGGCCCGACGATGCCCGTGAACGGCCGGATTGCGCACTTGCCACCGAAATTGGGAAAACACGAGTCTCCTAAACCACGCGCACGCAGCGAAGCGAAAGAAAGCACTCCAAAGAAACAAAAGCTGTGCAATTGTAAAAATTCACGGTGCCTCAAGTTGTACTGTGAGTGCTTTGCAGCTGGAATTTATTGTAAAGGATGCAACTGCATAAATTGTCATAATAATGTGGACAATGAAGCTGCTAGGCAGGATGCGGTTGGAGCAATTTTAGAGCGTAACCCAAAAGCATTCAGACCAAAGATTGCTAGCAGTCCACATGAATCTCGCGATTCTTGGGAAGATGCTGGGGAGGTTCAAAAGCACCACAAAGGATGTGCTTGCAGGAAGTCTGGGTGTCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAATGTTCTGTGTTCTGAAAACTGTAAATGCATGGACTGCAAGAACTTTGATGGAAGTGAAGAAAGAAGGGCTATCTTTCACGAAGATCACAATACGATAGCCAACATGCAACAGGCAAATGCCGCCATTAGTGGGGCCATCGGATCCTCTGGGTTTGGGCCTCTAGTGTCCAGACAAAGACCGAGCGATGAGCTTTTTTCTGGCATTGCCAGAGATCAATCAGTTCACCGGATTACACAGGCTCAGCAGGTACAATTTGTCAGAATACTTGAATATATTAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

350

Amino Acids

38.75

Weight (kDa)

9.08

Isoelectric Point (pI)

65.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCR PF03638 154 - 188 1.3e-11 Tesmin/TSO1-like CXC domain, cysteine-rich domain
TCR PF03638 236 - 270 1.2e-12 Tesmin/TSO1-like CXC domain, cysteine-rich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 375
Acc36I ACCTGC 1 cut(s) 1003
AccB1I GGYRCC 2 cut(s) 31, 486
AccBSI CCGCTC 1 cut(s) 106
AccII CGCG 2 cut(s) 420, 666
AciI CCGC 8 cut(s) 106, 119, 122, 149, 157, 314, 593, 888
AclWI GGATC 2 cut(s) 903, 916
AcoI YGGCCR 2 cut(s) 45, 364
AcsI RAATTY 2 cut(s) 478, 522
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 4 cut(s) 28, 500, 746, 1017
AfiI CCNNNNNNNGG 3 cut(s) 362, 392, 897
AgsI TTSAA 3 cut(s) 128, 695, 1037
AjnI CCWGG 1 cut(s) 47
AjuI GAANNNNNNNTTGG 2 cut(s) 753, 785
AluBI AGCT 6 cut(s) 196, 202, 463, 518, 578, 958
AluI AGCT 6 cut(s) 196, 202, 463, 518, 578, 958
Alw26I GTCTC 2 cut(s) 411, 740
AlwI GGATC 2 cut(s) 903, 916
AoxI GGCC 6 cut(s) 45, 335, 343, 364, 900, 923
ApaI GGGCCC 1 cut(s) 347
ApeKI GCWGC 6 cut(s) 139, 175, 202, 426, 515, 578
ApoI RAATTY 2 cut(s) 478, 522
AspLEI GCGC 6 cut(s) 34, 70, 163, 286, 376, 422
AspS9I GGNCC 5 cut(s) 113, 343, 344, 900, 923
AsuHPI GGTGA 1 cut(s) 983
AsuNHI GCTAGC 1 cut(s) 644
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 347
BalI TGGCCA 1 cut(s) 47
BamHI GGATCC 1 cut(s) 908
BanI GGYRCC 2 cut(s) 31, 486
BanII GRGCYC 1 cut(s) 347
BauI CACGAG 1 cut(s) 401
BbvI GCAGC 6 cut(s) 151, 187, 189, 438, 527, 565
BccI CCATC 2 cut(s) 809, 911
BceAI ACGGC 5 cut(s) 45, 64, 163, 283, 379
BciT130I CCWGG 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 411, 740
BfaI CTAG 3 cut(s) 582, 645, 929
BfmI CTRYAG 2 cut(s) 197, 203
BfoI RGCGCY 2 cut(s) 35, 71
BfuAI ACCTGC 1 cut(s) 1003
BisI GCNGC 9 cut(s) 120, 140, 149, 176, 203, 427, 516, 579, 888
BlpI GCTNAGC 1 cut(s) 1008
BlsI GCNGC 9 cut(s) 121, 141, 150, 177, 204, 428, 517, 580, 889
BmcAI AGTACT 1 cut(s) 746
Bme1390I CCNGG 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 5 cut(s) 113, 343, 344, 900, 923
BmiI GGNNCC 5 cut(s) 33, 345, 488, 901, 910
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 6 cut(s) 160, 172, 342, 527, 580, 670
BmtI GCTAGC 1 cut(s) 648
Bpu1102I GCTNAGC 1 cut(s) 1008
BpuEI CTTGAG 2 cut(s) 476, 722
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 179
BsaWI WCCGGW 2 cut(s) 23, 993
Bsc4I CCNNNNNNNGG 3 cut(s) 362, 392, 897
Bse118I RCCGGY 4 cut(s) 70, 115, 241, 337
Bse3DI GCAATG 1 cut(s) 969
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 4 cut(s) 163, 542, 595, 716
BseLI CCNNNNNNNGG 3 cut(s) 362, 392, 897
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 1 cut(s) 1022
BseSI GKGCMC 1 cut(s) 347
BseX3I CGGCCG 1 cut(s) 364
BseXI GCAGC 6 cut(s) 151, 187, 189, 438, 527, 565
BseYI CCCAGC 1 cut(s) 683
Bsh1236I CGCG 2 cut(s) 420, 666
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 6 cut(s) 47, 337, 345, 366, 902, 925
BshNI GGYRCC 2 cut(s) 31, 486
BsiEI CGRYCG 1 cut(s) 367
BsiSI CCGG 8 cut(s) 24, 71, 101, 116, 242, 338, 367, 994
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 3 cut(s) 362, 392, 897
BsmAI GTCTC 2 cut(s) 411, 740
BsmFI GGGAC 1 cut(s) 289
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 6 cut(s) 47, 337, 345, 366, 902, 925
Bsp120I GGGCCC 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 3 cut(s) 850, 908, 979
Bsp1720I GCTNAGC 1 cut(s) 1008
Bsp68I TCGCGA 1 cut(s) 666
BspACI CCGC 8 cut(s) 106, 119, 122, 149, 157, 314, 593, 888
BspANI GGCC 6 cut(s) 47, 337, 345, 366, 902, 925
BspCNI CTCAG 1 cut(s) 1021
BspFNI CGCG 2 cut(s) 420, 666
BspLI GGNNCC 5 cut(s) 33, 345, 488, 901, 910
BspMAI CTGCAG 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 1003
BspOI GCTAGC 1 cut(s) 648
BspPI GGATC 2 cut(s) 903, 916
BspT107I GGYRCC 2 cut(s) 31, 486
BsrBI CCGCTC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 969
BsrFI RCCGGY 4 cut(s) 70, 115, 241, 337
BssAI RCCGGY 4 cut(s) 70, 115, 241, 337
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 3 cut(s) 850, 908, 979
BssNI GRCGYC 1 cut(s) 32
BssSI CACGAG 1 cut(s) 401
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 9 cut(s) 19, 213, 249, 261, 280, 486, 503, 749, 788
BstACI GRCGYC 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 801
BstC8I GCNNGC 6 cut(s) 159, 243, 312, 424, 646, 718
BstDEI CTNAG 1 cut(s) 1008
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 4 cut(s) 163, 542, 595, 716
BstFNI CGCG 2 cut(s) 420, 666
BstH2I RGCGCY 2 cut(s) 35, 71
BstHHI GCGC 6 cut(s) 34, 70, 163, 286, 376, 422
BstKTI GATC 3 cut(s) 853, 911, 982
BstMAI GTCTC 2 cut(s) 411, 740
BstMBI GATC 3 cut(s) 850, 908, 979
BstMCI CGRYCG 1 cut(s) 367
BstNI CCWGG 1 cut(s) 49
BstNSI RCATGY 1 cut(s) 874
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 2 cut(s) 197, 203
BstSLI GKGCMC 1 cut(s) 347
BstUI CGCG 2 cut(s) 420, 666
BstV1I GCAGC 6 cut(s) 151, 187, 189, 438, 527, 565
BstX2I RGATCY 1 cut(s) 908
BstXI CCANNNNNNTGG 1 cut(s) 55
BstYI RGATCY 1 cut(s) 908
BstZI CGGCCG 1 cut(s) 364
BsuRI GGCC 6 cut(s) 47, 337, 345, 366, 902, 925
BtgI CCRYGG 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 966
BtsCI GGATG 4 cut(s) 163, 542, 595, 716
BtuMI TCGCGA 1 cut(s) 666
BveI ACCTGC 1 cut(s) 1003
Cac8I GCNNGC 6 cut(s) 159, 243, 312, 424, 646, 718
CfoI GCGC 6 cut(s) 34, 70, 163, 286, 376, 422
Cfr10I RCCGGY 4 cut(s) 70, 115, 241, 337
Cfr13I GGNCC 5 cut(s) 113, 343, 344, 900, 923
CseI GACGC 2 cut(s) 181, 316
Csp6I GTAC 4 cut(s) 27, 499, 745, 1016
CspCI CAANNNNNGTGG 4 cut(s) 210, 245, 372, 407
CviAII CATG 3 cut(s) 656, 796, 871
CviQI GTAC 4 cut(s) 27, 499, 745, 1016
DdeI CTNAG 1 cut(s) 1008
DinI GGCGCC 1 cut(s) 33
DpnI GATC 3 cut(s) 852, 910, 981
DpnII GATC 3 cut(s) 850, 908, 979
EaeI YGGCCR 2 cut(s) 45, 364
EagI CGGCCG 1 cut(s) 364
EclXI CGGCCG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 113
Eco52I CGGCCG 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 797
EcoT38I GRGCYC 1 cut(s) 347
EgeI GGCGCC 1 cut(s) 33
EheI GGCGCC 1 cut(s) 33
FaeI CATG 3 cut(s) 659, 799, 874
FaiI YATR 7 cut(s) 234, 548, 558, 657, 797, 872, 1041
FaqI GGGAC 1 cut(s) 289
FatI CATG 3 cut(s) 655, 795, 870
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 9 cut(s) 120, 140, 149, 176, 203, 427, 516, 579, 888
FokI GGATG 4 cut(s) 150, 549, 602, 723
FriOI GRGCYC 1 cut(s) 347
Fsp4HI GCNGC 9 cut(s) 120, 140, 149, 176, 203, 427, 516, 579, 888
FspBI CTAG 3 cut(s) 582, 645, 929
FspI TGCGCA 1 cut(s) 375
GlaI GCGC 6 cut(s) 33, 69, 162, 285, 375, 421
GluI GCNGC 9 cut(s) 120, 140, 149, 176, 203, 427, 516, 579, 888
GsaI CCCAGC 1 cut(s) 687
HaeII RGCGCY 2 cut(s) 35, 71
HaeIII GGCC 6 cut(s) 47, 337, 345, 366, 902, 925
HapII CCGG 8 cut(s) 24, 71, 101, 116, 242, 338, 367, 994
HgaI GACGC 2 cut(s) 181, 316
HhaI GCGC 6 cut(s) 34, 70, 163, 286, 376, 422
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 3 cut(s) 659, 799, 874
Hin6I GCGC 6 cut(s) 32, 68, 161, 284, 374, 420
HinP1I GCGC 6 cut(s) 32, 68, 161, 284, 374, 420
HinfI GANTC 3 cut(s) 404, 659, 668
HpaII CCGG 8 cut(s) 24, 71, 101, 116, 242, 338, 367, 994
HphI GGTGA 1 cut(s) 983
Hpy166II GTNNAC 5 cut(s) 88, 361, 568, 653, 991
Hpy188I TCNGA 5 cut(s) 306, 632, 781, 908, 1028
Hpy188III TCNNGA 5 cut(s) 111, 665, 739, 845, 936
Hpy8I GTNNAC 5 cut(s) 88, 361, 568, 653, 991
Hpy99I CGWCG 1 cut(s) 352
HpyAV CCTTC 1 cut(s) 825
HpyCH4III ACNGT 9 cut(s) 19, 213, 249, 261, 280, 486, 503, 749, 788
HpyF3I CTNAG 1 cut(s) 1008
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 3 cut(s) 659, 799, 874
HspAI GCGC 6 cut(s) 32, 68, 161, 284, 374, 420
KasI GGCGCC 1 cut(s) 31
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
Kzo9I GATC 3 cut(s) 850, 908, 979
LmnI GCTCC 3 cut(s) 4, 103, 599
Lsp1109I GCAGC 6 cut(s) 151, 187, 189, 438, 527, 565
LweI GCATC 6 cut(s) 160, 172, 342, 527, 580, 670
MaeI CTAG 3 cut(s) 582, 645, 929
MaeIII GTNAC 6 cut(s) 183, 207, 213, 255, 261, 614
MalI GATC 3 cut(s) 852, 910, 981
MbiI CCGCTC 1 cut(s) 106
MboI GATC 3 cut(s) 850, 908, 979
MboII GAAGA 4 cut(s) 49, 689, 836, 860
MfeI CAATTG 1 cut(s) 469
MflI RGATCY 1 cut(s) 908
MhlI GDGCHC 1 cut(s) 347
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 8 cut(s) 41, 389, 469, 478, 522, 550, 603, 1019
MluNI TGGCCA 1 cut(s) 47
Mly113I GGCGCC 1 cut(s) 32
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 2 cut(s) 36, 577
MnlI CCTC 5 cut(s) 327, 500, 682, 922, 936
Mox20I TGGCCA 1 cut(s) 47
Mph1103I ATGCAT 1 cut(s) 797
MroNI GCCGGC 1 cut(s) 241
MscI TGGCCA 1 cut(s) 47
MseI TTAA 1 cut(s) 1044
MslI CAYNNNNRTG 1 cut(s) 561
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 2 cut(s) 202, 518
MspI CCGG 8 cut(s) 24, 71, 101, 116, 242, 338, 367, 994
MspR9I CCNGG 1 cut(s) 49
MunI CAATTG 1 cut(s) 469
Mva1269I GAATGC 1 cut(s) 626
MvaI CCWGG 1 cut(s) 49
MvnI CGCG 2 cut(s) 420, 666
NaeI GCCGGC 1 cut(s) 243
NarI GGCGCC 1 cut(s) 32
NdeII GATC 3 cut(s) 850, 908, 979
NgoMIV GCCGGC 1 cut(s) 241
NheI GCTAGC 1 cut(s) 644
NlaIII CATG 3 cut(s) 659, 799, 874
NlaIV GGNNCC 5 cut(s) 33, 345, 488, 901, 910
NmuCI GTSAC 4 cut(s) 183, 207, 213, 261
NruI TCGCGA 1 cut(s) 666
NsbI TGCGCA 1 cut(s) 375
NsiI ATGCAT 1 cut(s) 797
NspI RCATGY 1 cut(s) 874
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PctI GAATGC 1 cut(s) 626
PdiI GCCGGC 1 cut(s) 243
PfeI GAWTC 2 cut(s) 659, 668
PkrI GCNGC 9 cut(s) 121, 141, 150, 177, 204, 428, 517, 580, 889
PleI GAGTC 1 cut(s) 412
PluTI GGCGCC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 47
PspFI CCCAGC 1 cut(s) 683
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 5 cut(s) 33, 345, 488, 901, 910
PspOMI GGGCCC 1 cut(s) 343
PspPI GGNCC 5 cut(s) 113, 343, 344, 900, 923
PstI CTGCAG 1 cut(s) 207
PsuI RGATCY 1 cut(s) 908
PvuII CAGCTG 2 cut(s) 202, 518
RruI TCGCGA 1 cut(s) 666
RsaI GTAC 4 cut(s) 28, 500, 746, 1017
RsaNI GTAC 4 cut(s) 27, 499, 745, 1016
RseI CAYNNNNRTG 1 cut(s) 561
SaqAI TTAA 1 cut(s) 1044
SatI GCNGC 9 cut(s) 120, 140, 149, 176, 203, 427, 516, 579, 888
Sau3AI GATC 3 cut(s) 850, 908, 979
Sau96I GGNCC 5 cut(s) 113, 343, 344, 900, 923
ScaI AGTACT 1 cut(s) 746
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 49
SduI GDGCHC 1 cut(s) 347
SetI ASST 8 cut(s) 198, 204, 465, 520, 580, 693, 960, 1017
SfaNI GCATC 6 cut(s) 160, 172, 342, 527, 580, 670
SfcI CTRYAG 2 cut(s) 197, 203
SfoI GGCGCC 1 cut(s) 33
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 491, 737
SmoI CTYRAG 2 cut(s) 491, 737
Sse9I AATT 8 cut(s) 41, 389, 469, 478, 522, 550, 603, 1019
SsiI CCGC 8 cut(s) 106, 119, 122, 149, 157, 314, 593, 888
SspDI GGCGCC 1 cut(s) 31
SspMI CTAG 3 cut(s) 582, 645, 929
StyD4I CCNGG 1 cut(s) 47
TaaI ACNGT 9 cut(s) 19, 213, 249, 261, 280, 486, 503, 749, 788
TaqII GACCGA 1 cut(s) 961
TasI AATT 8 cut(s) 41, 389, 469, 478, 522, 550, 603, 1019
TatI WGTACW 2 cut(s) 498, 744
TauI GCSGC 3 cut(s) 122, 151, 890
TfiI GAWTC 2 cut(s) 659, 668
Tru1I TTAA 1 cut(s) 1044
Tru9I TTAA 1 cut(s) 1044
TseFI GTSAC 4 cut(s) 183, 207, 213, 261
TseI GCWGC 6 cut(s) 139, 175, 202, 426, 515, 578
Tsp45I GTSAC 4 cut(s) 183, 207, 213, 261
TspDTI ATGAA 2 cut(s) 588, 672
TspGWI ACGGA 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 2 cut(s) 478, 522
XceI RCATGY 1 cut(s) 874
XspI CTAG 3 cut(s) 582, 645, 929
ZrmI AGTACT 1 cut(s) 746
Zsp2I ATGCAT 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.