Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014983

Physical Location & Seq

Genomic Coordinates Forward (+)

9479424 .. 9480200

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G26930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGATCCAAGGAAGCTACTATCTTGTTCATCCTCTTACGTGTCAGTGAGAATGAAAGAAGAGAAGGGGACAATTAGGTGTTGCAGTGAGTGTAAGACCACCAAGACACCAATGTGGAGAGGTGGACCAACTGGTCCTAAGTCACTTTGCAATGCATGTGGAATTAGACACAGAAAACAGAGACGATCAGAGTTATTGGGTATTCATATTATTCGCAGCCACAAAAGCTTAGCCTCCAAGAAGATAAACCTATTATCATCATCACACGGTGGCGTGGCGGTGAAGAAACGAAGGAGTCTAAAGGAGGAAGAACAAGCTGCTTTGTGTCTATTGTTATTGTCTTGTAGCTCTGTTTTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090696 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

120

Amino Acids

13.24

Weight (kDa)

10.06

Isoelectric Point (pI)

72.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	28 - 62	3.4e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0014983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26930
fragaria_vesca	FvH4_6g07120
malus_domestica	MD12G1208800.v1.1
prunus_persica	Prupe.6G316000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456711
rosa_laevigata	RLG00000025282
rosa_multiflora	Rmu_sc0000133.1_g000027 Rmu_sc0037422.1_g000001
rosa_roxburghii	Rroxscaffold_11G00450380 Rroxscaffold_6G00422520
rosa_rugosa	Rorug03G0015200
rosa_samantha	Rh3AG075700 Rh3BG077600 Rh3CG077400 Rh3DG079300
rosa_wichuraiana	Rw3G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	132
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	1 cut(s)	12
AdeI	CACNNNGTG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	39
AleI	CACNNNNGTG	1 cut(s)	112
AluBI	AGCT	4 cut(s)	16, 228, 317, 348
AluI	AGCT	4 cut(s)	16, 228, 317, 348
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	2 cut(s)	216, 317
AspS9I	GGNCC	2 cut(s)	125, 134
AsuHPI	GGTGA	1 cut(s)	292
AvaII	GGWCC	2 cut(s)	125, 134
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	228, 304
BcoDI	GTCTC	1 cut(s)	175
BisI	GCNGC	2 cut(s)	217, 318
BlpI	GCTNAGC	1 cut(s)	229
BlsI	GCNGC	2 cut(s)	218, 319
Bme18I	GGWCC	2 cut(s)	125, 134
BmgT120I	GGNCC	2 cut(s)	125, 134
BmiI	GGNNCC	1 cut(s)	6
Bpu1102I	GCTNAGC	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	228, 304
BshFI	GGCC	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	175
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	359
Bsp143I	GATC	2 cut(s)	4, 185
Bsp1720I	GCTNAGC	1 cut(s)	229
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	359
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	2 cut(s)	4, 185
BssT1I	CCWWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	138, 229
BstF5I	GGATG	1 cut(s)	29
BstKTI	GATC	2 cut(s)	7, 188
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	4, 185
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	228, 304
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	29
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	51, 91
Cfr13I	GGNCC	2 cut(s)	125, 134
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	7 cut(s)	16, 219, 228, 233, 317, 348, 359
CviKI_1	RGCY	7 cut(s)	16, 219, 228, 233, 317, 348, 359
DdeI	CTNAG	2 cut(s)	138, 229
DpnI	GATC	2 cut(s)	6, 187
DpnII	GATC	2 cut(s)	4, 185
DraIII	CACNNNGTG	1 cut(s)	269
DrdI	GACNNNNNNGTC	1 cut(s)	132
DseDI	GACNNNNNNGTC	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	125, 134
EcoT14I	CCWWGG	1 cut(s)	8
EcoT22I	ATGCAT	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	8
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	1 cut(s)	159
FaiI	YATR	2 cut(s)	157, 207
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	1 cut(s)	155
Fnu4HI	GCNGC	2 cut(s)	217, 318
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	2 cut(s)	217, 318
GluI	GCNGC	2 cut(s)	217, 318
HaeIII	GGCC	1 cut(s)	359
Hin1II	CATG	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	1 cut(s)	295
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	190
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	58, 285
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	84, 150, 155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	2 cut(s)	138, 229
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	4, 185
LpnPI	CCDG	1 cut(s)	117
Lsp1109I	GCAGC	2 cut(s)	228, 304
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	2 cut(s)	6, 187
MboI	GATC	2 cut(s)	4, 185
MboII	GAAGA	4 cut(s)	71, 253, 295, 320
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	2 cut(s)	72, 162
MlyI	GAGTC	1 cut(s)	304
MnlI	CCTC	4 cut(s)	43, 113, 244, 298
Mph1103I	ATGCAT	1 cut(s)	157
MslI	CAYNNNNRTG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	2 cut(s)	4, 185
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	1 cut(s)	159
OliI	CACNNNNGTG	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	218, 319
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
Ppu21I	YACGTR	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	125, 134
PsuI	RGATCY	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	112
SatI	GCNGC	2 cut(s)	217, 318
Sau3AI	GATC	2 cut(s)	4, 185
Sau96I	GGNCC	2 cut(s)	125, 134
SchI	GAGTC	1 cut(s)	304
SetI	ASST	8 cut(s)	18, 42, 80, 124, 230, 252, 319, 350
SinI	GGWCC	2 cut(s)	125, 134
SmiMI	CAYNNNNRTG	1 cut(s)	112
Sse9I	AATT	2 cut(s)	72, 162
SsiI	CCGC	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	1 cut(s)	42
TasI	AATT	2 cut(s)	72, 162
TscAI	CASTG	2 cut(s)	51, 91
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	2 cut(s)	216, 317
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	3 cut(s)	18, 68, 194
TspRI	CASTG	2 cut(s)	51, 91
VpaK11BI	GGWCC	2 cut(s)	125, 134
XceI	RCATGY	1 cut(s)	159
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.