Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0014983

Physical Location & Seq

Genomic Coordinates Reverse (-)

1217388 .. 1219190

Gene Structure 1803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0015200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGGAATTATTCCTGAAGGCCAAATCACAAGGATGAATGTCACTTTCAATGCCAACGGACAACCTTATGGCACAAATTCAGACAAATTTGCAACAGTTCTTGGGGTCTTGACAAGAACACATATCCCAGTTACCCATCCAACATGGAAGGATCTCGATCCCACCAAGAAGGACGATGTTTGGAAATTAACTCAGCAATACTTCATTGTGGATCCGGTGCATAAAGGCATGGTTTACAGAATGCTTGGAAATTATTGGAGACAATATAAGTGTGCAGTTACAAAAAAGATTCTGAAAGCAAGTAGGAAAAAGCATAAGAAACGTGCAATTGACAAGGTCAAGCCAGCAAATGTGAAATCTCAGATAGAATGGGACAACTTTGTGAAATACAGACTTGGTCCTGAGTTTCGGCTGTTAAGTGAGAAGTTCAGAAAAATGCGGAAGAAGCAAGAGTACACTCACACATTGAGCCGAATGGGTTATGCACGCTTGGAGCACAAAATGAAAAAGGAAAATCCTACTGAAGAAGTAACAAGAGTCAAATTGTGGACTAAAGCGCATGAGAAAGGCGGTAAACCTGTTAATGAAGTTGTTGGTGCCATATTGGAAGGTTTAAAAGCGTGTAATGAGTCACAGGAGAACCCACCATCTGCAAATTCCATAAGGGATGATGCACTTGCAAGAGTTTTAGGACCTGAAACTCGTGGACGAGTTCGTGGGCTTGGGTTTGGTGCTACACCATCTCGAGTCAATGCTACTATTCAAGGCAGTGCAAAGGTTAAAGAACTTGAAGCTACTGTATTAAGTCAATCACAGAGGCTTGCTCAGGTTGAAGCAAAGCTTGAAGCTCTTTTAAAGGCCACTCAGGAGGTCCCTCAACAGAACAGAAACTTAGAGCAAATGATAAATGCACATGCAACTACTTCTCAGTCACAACAATCAAGTCGACCAATCAATGCTCCAAGCAATGATCTTGAAAATAGAAGATGTGCACTTTTGAATTGGAACAATTATGAAGAAGATGAAGTAGTGGCTGAAGGGAAGATCTCTTCAACAAATCCAAGTACAAAAGTTCATTGTGTGCCTCTTGGACGAGATTGTTGGAAGGTTTGGGTTGATGTGGTGTTTGATAAGTATCAGACTATGGAAGTGTATAGAGCAACCATGGATGCCAAACAACTTGGTGAAGCTGTAGGAAGCACTCTTGCATGGCCCAAAAGCTCCATTAAAATGCTCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

413

Amino Acids

46.84

Weight (kDa)

9.71

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	124 - 247	5.2e-18	Plant transposase (Ptta/En/Spm family)
DUF8039	PF26133	327 - 411	5.1e-14	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26930
fragaria_vesca	FvH4_6g07120
malus_domestica	MD12G1208800.v1.1
prunus_persica	Prupe.6G316000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456711
rosa_laevigata	RLG00000025282
rosa_multiflora	Rmu_sc0000133.1_g000027 Rmu_sc0037422.1_g000001
rosa_roxburghii	Rroxscaffold_11G00450380 Rroxscaffold_6G00422520
rosa_rugosa	Rorug03G0015200
rosa_samantha	Rh3AG075700 Rh3BG077600 Rh3CG077400 Rh3DG079300
rosa_wichuraiana	Rw3G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	946
AciI	CCGC	2 cut(s)	439, 570
AclWI	GGATC	4 cut(s)	152, 159, 206, 219
AcsI	RAATTY	3 cut(s)	76, 86, 655
AcuI	CTGAAG	3 cut(s)	36, 543, 1056
AfaI	GTAC	2 cut(s)	455, 1066
AgsI	TTSAA	8 cut(s)	49, 764, 791, 833, 845, 977, 1000, 1053
AluBI	AGCT	5 cut(s)	794, 841, 848, 1190, 1221
AluI	AGCT	5 cut(s)	794, 841, 848, 1190, 1221
Alw21I	GWGCWC	2 cut(s)	498, 994
Alw26I	GTCTC	1 cut(s)	253
Alw44I	GTGCAC	1 cut(s)	990
AlwI	GGATC	4 cut(s)	152, 159, 206, 219
Ama87I	CYCGRG	1 cut(s)	744
AoxI	GGCC	3 cut(s)	19, 858, 1211
ApaLI	GTGCAC	1 cut(s)	990
ApoI	RAATTY	3 cut(s)	76, 86, 655
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	4 cut(s)	398, 692, 871, 1212
AsuHPI	GGTGA	1 cut(s)	1196
AvaI	CYCGRG	1 cut(s)	744
AvaII	GGWCC	3 cut(s)	398, 692, 871
BaeGI	GKGCMC	1 cut(s)	994
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	596
BarI	GAAGNNNNNNTAC	2 cut(s)	437, 469
BauI	CACGAG	1 cut(s)	702
Bbv12I	GWGCWC	2 cut(s)	498, 994
BccI	CCATC	3 cut(s)	144, 655, 748
BcoDI	GTCTC	1 cut(s)	253
BfmI	CTRYAG	1 cut(s)	1191
BglII	AGATCT	1 cut(s)	1044
Bme18I	GGWCC	3 cut(s)	398, 692, 871
BmeT110I	CYCGRG	1 cut(s)	744
BmgT120I	GGNCC	4 cut(s)	398, 692, 871, 1212
BmiI	GGNNCC	3 cut(s)	213, 598, 873
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	2 cut(s)	661, 1159
BmuI	ACTGGG	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	808, 840
Bpu10I	CCTNAGC	1 cut(s)	825
BsaBI	GATNNNNATC	2 cut(s)	156, 1134
BsaJI	CCNNGG	1 cut(s)	1164
BsaWI	WCCGGW	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	973
Bse8I	GATNNNNATC	2 cut(s)	156, 1134
BseDI	CCNNGG	1 cut(s)	1164
BseGI	GGATG	4 cut(s)	39, 136, 673, 1174
BseJI	GATNNNNATC	2 cut(s)	156, 1134
BseMI	GCAATG	1 cut(s)	973
BseMII	CTCAG	6 cut(s)	206, 374, 393, 839, 878, 941
BseNI	ACTGG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	994
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	21, 860, 1213
BshNI	GGYRCC	1 cut(s)	596
BsiHKAI	GWGCWC	2 cut(s)	498, 994
BsiHKCI	CYCGRG	1 cut(s)	744
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	2 cut(s)	386, 857
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	2 cut(s)	386, 857
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	3 cut(s)	21, 860, 1213
BsoBI	CYCGRG	1 cut(s)	744
Bsp1286I	GDGCHC	2 cut(s)	498, 994
Bsp143I	GATC	5 cut(s)	151, 157, 211, 970, 1044
Bsp19I	CCATGG	1 cut(s)	1164
BspACI	CCGC	2 cut(s)	439, 570
BspANI	GGCC	3 cut(s)	21, 860, 1213
BspCNI	CTCAG	6 cut(s)	205, 373, 394, 838, 877, 940
BspLI	GGNNCC	3 cut(s)	213, 598, 873
BspPI	GGATC	4 cut(s)	152, 159, 206, 219
BspT107I	GGYRCC	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	973
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	1164
BssMI	GATC	5 cut(s)	151, 157, 211, 970, 1044
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	1164
Bst2BI	CACGAG	1 cut(s)	702
Bst4CI	ACNGT	2 cut(s)	97, 799
Bst6I	CTCTTC	1 cut(s)	1054
BstC8I	GCNNGC	3 cut(s)	345, 487, 822
BstDEI	CTNAG	8 cut(s)	192, 360, 402, 825, 864, 892, 927, 1239
BstDSI	CCRYGG	1 cut(s)	1164
BstF5I	GGATG	4 cut(s)	39, 136, 673, 1174
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	5 cut(s)	154, 160, 214, 973, 1047
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	5 cut(s)	151, 157, 211, 970, 1044
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstNSI	RCATGY	1 cut(s)	917
BstSFI	CTRYAG	1 cut(s)	1191
BstSLI	GKGCMC	1 cut(s)	994
BstX2I	RGATCY	3 cut(s)	151, 211, 1044
BstYI	RGATCY	3 cut(s)	151, 211, 1044
BsuRI	GGCC	3 cut(s)	21, 860, 1213
BtgI	CCRYGG	1 cut(s)	1164
BtsCI	GGATG	4 cut(s)	39, 136, 673, 1174
BtsI	GCAGTG	1 cut(s)	775
BtsIMutI	CAGTG	1 cut(s)	775
Cac8I	GCNNGC	3 cut(s)	345, 487, 822
CfoI	GCGC	1 cut(s)	559
Cfr13I	GGNCC	4 cut(s)	398, 692, 871, 1212
Csp6I	GTAC	2 cut(s)	454, 1065
CviAII	CATG	6 cut(s)	144, 229, 560, 914, 1165, 1209
CviQI	GTAC	2 cut(s)	454, 1065
DdeI	CTNAG	8 cut(s)	192, 360, 402, 825, 864, 892, 927, 1239
DpnI	GATC	5 cut(s)	153, 159, 213, 972, 1046
DpnII	GATC	5 cut(s)	151, 157, 211, 970, 1044
DraI	TTTAAA	2 cut(s)	615, 855
Eam1104I	CTCTTC	1 cut(s)	1054
EarI	CTCTTC	1 cut(s)	1054
Eco130I	CCWWGG	1 cut(s)	1164
Eco47I	GGWCC	3 cut(s)	398, 692, 871
Eco57I	CTGAAG	3 cut(s)	36, 543, 1056
Eco88I	CYCGRG	1 cut(s)	744
EcoO109I	RGGNCCY	2 cut(s)	692, 871
EcoT14I	CCWWGG	1 cut(s)	1164
ErhI	CCWWGG	1 cut(s)	1164
FaeI	CATG	6 cut(s)	147, 232, 563, 917, 1168, 1212
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FaqI	GGGAC	2 cut(s)	386, 857
FatI	CATG	6 cut(s)	143, 228, 559, 913, 1164, 1208
FblI	GTMKAC	1 cut(s)	946
FokI	GGATG	4 cut(s)	46, 123, 680, 1181
GlaI	GCGC	1 cut(s)	558
HaeIII	GGCC	3 cut(s)	21, 860, 1213
HapII	CCGG	1 cut(s)	215
HhaI	GCGC	1 cut(s)	559
Hin1II	CATG	6 cut(s)	147, 232, 563, 917, 1168, 1212
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	1 cut(s)	947
HindII	GTYRAC	1 cut(s)	947
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	4 cut(s)	289, 537, 629, 747
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	1196
Hpy166II	GTNNAC	7 cut(s)	235, 456, 549, 575, 707, 947, 992
Hpy188I	TCNGA	5 cut(s)	82, 294, 363, 431, 1140
Hpy188III	TCNNGA	7 cut(s)	14, 109, 155, 401, 744, 866, 974
Hpy8I	GTNNAC	7 cut(s)	235, 456, 549, 575, 707, 947, 992
HpyAV	CCTTC	6 cut(s)	11, 142, 163, 602, 1031, 1099
HpyCH4III	ACNGT	2 cut(s)	97, 799
HpyCH4IV	ACGT	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpyF3I	CTNAG	8 cut(s)	192, 360, 402, 825, 864, 892, 927, 1239
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	6 cut(s)	147, 232, 563, 917, 1168, 1212
HspAI	GCGC	1 cut(s)	557
Kzo9I	GATC	5 cut(s)	151, 157, 211, 970, 1044
LmnI	GCTCC	4 cut(s)	493, 964, 1226, 1239
LweI	GCATC	2 cut(s)	661, 1159
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	6 cut(s)	40, 130, 277, 529, 630, 930
MalI	GATC	5 cut(s)	153, 159, 213, 972, 1046
MboI	GATC	5 cut(s)	151, 157, 211, 970, 1044
MboII	GAAGA	7 cut(s)	454, 536, 996, 1028, 1031, 1041, 1054
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	3 cut(s)	151, 211, 1044
MhlI	GDGCHC	2 cut(s)	498, 994
MlyI	GAGTC	3 cut(s)	546, 638, 756
MmeI	TCCRAC	2 cut(s)	164, 1082
MnlI	CCTC	4 cut(s)	810, 862, 885, 1095
MseI	TTAA	8 cut(s)	188, 416, 582, 614, 780, 803, 854, 1227
MslI	CAYNNNNRTG	2 cut(s)	32, 1229
MspI	CCGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	445
NcoI	CCATGG	1 cut(s)	1164
NdeII	GATC	5 cut(s)	151, 157, 211, 970, 1044
NlaIII	CATG	6 cut(s)	147, 232, 563, 917, 1168, 1212
NlaIV	GGNNCC	3 cut(s)	213, 598, 873
NmuCI	GTSAC	3 cut(s)	40, 630, 930
NspI	RCATGY	1 cut(s)	917
PaeR7I	CTCGAG	1 cut(s)	744
PctI	GAATGC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	289
PflFI	GACNNNGTC	2 cut(s)	335, 396
PleI	GAGTC	3 cut(s)	545, 637, 755
PpsI	GAGTC	3 cut(s)	545, 637, 755
PpuMI	RGGWCCY	2 cut(s)	692, 871
Psp5II	RGGWCCY	2 cut(s)	692, 871
PspN4I	GGNNCC	3 cut(s)	213, 598, 873
PspPI	GGNCC	4 cut(s)	398, 692, 871, 1212
PspPPI	RGGWCCY	2 cut(s)	692, 871
PsuI	RGATCY	3 cut(s)	151, 211, 1044
PsyI	GACNNNGTC	2 cut(s)	335, 396
RsaI	GTAC	2 cut(s)	455, 1066
RsaNI	GTAC	2 cut(s)	454, 1065
RseI	CAYNNNNRTG	2 cut(s)	32, 1229
SalI	GTCGAC	1 cut(s)	945
SaqAI	TTAA	8 cut(s)	188, 416, 582, 614, 780, 803, 854, 1227
Sau3AI	GATC	5 cut(s)	151, 157, 211, 970, 1044
Sau96I	GGNCC	4 cut(s)	398, 692, 871, 1212
SchI	GAGTC	3 cut(s)	546, 638, 756
SduI	GDGCHC	2 cut(s)	498, 994
SfaNI	GCATC	2 cut(s)	661, 1159
SfcI	CTRYAG	1 cut(s)	1191
Sfr274I	CTCGAG	1 cut(s)	744
SinI	GGWCC	3 cut(s)	398, 692, 871
SlaI	CTCGAG	1 cut(s)	744
SmiMI	CAYNNNNRTG	2 cut(s)	32, 1229
SmlI	CTYRAG	1 cut(s)	744
SmoI	CTYRAG	1 cut(s)	744
SsiI	CCGC	2 cut(s)	439, 570
StyI	CCWWGG	1 cut(s)	1164
TaaI	ACNGT	2 cut(s)	97, 799
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	3 cut(s)	156, 745, 946
TatI	WGTACW	2 cut(s)	453, 1064
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	8 cut(s)	188, 416, 582, 614, 780, 803, 854, 1227
Tru9I	TTAA	8 cut(s)	188, 416, 582, 614, 780, 803, 854, 1227
TscAI	CASTG	1 cut(s)	775
TseFI	GTSAC	3 cut(s)	40, 630, 930
Tsp45I	GTSAC	3 cut(s)	40, 630, 930
TspDTI	ATGAA	7 cut(s)	50, 193, 518, 600, 1029, 1038, 1064
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	775
Tth111I	GACNNNGTC	2 cut(s)	335, 396
VneI	GTGCAC	1 cut(s)	990
VpaK11BI	GGWCC	3 cut(s)	398, 692, 871
XapI	RAATTY	3 cut(s)	76, 86, 655
XceI	RCATGY	1 cut(s)	917
XhoI	CTCGAG	1 cut(s)	744
XmiI	GTMKAC	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.