Rh3BG077600

zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0014983
Physical Location & Seq
Reverse (-)
6082656 .. 6083991
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG077600.1

Sequence Viewer

Length: 549 bp
ATGATGAATTTGAGGAGCAAGGGATCAGTGGCTCAAGAGAGTGCTGAGAGGAGCTGTGTTGACTGCAAGGTGACCAGGACACCATTGTGGAGAAGTGGGCCGGCTGGTCCAAAGACCCTGTGCAATGCCTGCGGCATCAGGCTGAGGAAACGACTTGCCAGTCTGAACCCAGAAGAGAAAGCAAACAAGGGGAAGAGAAAGAAATCCAGAACAGAAAGAACTAGGCCAACAGCCTCTGTCTCCACTAATGGCTCAACAACAAACACTGCTGCTGGTAAAAGCACTTCCACAACAGCCAAAAGTGCTTCTTCTCCTCCTCCTCCTGCTGCTGCTTATGGCAATGCTCGTGGTAGTCGCGGCACATACTTGCTCAGGGCGGTGAGGATTGTTGCGAATAAACAGAGAGTGGTGAGAAAGTTGAGGTGGTGCTTCCAAAGGAGGAGGAGGACTAATTTTAGGAGGACTGGTTTTTACTTCTTCGACAAAAATGTGGAACAAGCAGCTGTGGCGGCATTGCTAGCTCTCTCATGTGGCTCCTCTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

182

Amino Acids

19.9

Weight (kDa)

11.48

Isoelectric Point (pI)

60.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 19 - 51 2.2e-15 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26930
fragaria_vesca FvH4_6g07120
malus_domestica MD12G1208800.v1.1
prunus_persica Prupe.6G316000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0456711
rosa_laevigata RLG00000025282
rosa_multiflora Rmu_sc0000133.1_g000027 Rmu_sc0037422.1_g000001
rosa_roxburghii Rroxscaffold_11G00450380 Rroxscaffold_6G00422520
rosa_rugosa Rorug03G0015200
rosa_samantha Rh3AG075700 Rh3BG077600 Rh3CG077400 Rh3DG079300
rosa_wichuraiana Rw3G006490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 159
AccII CGCG 1 cut(s) 357
AciI CCGC 4 cut(s) 132, 357, 377, 509
AclWI GGATC 1 cut(s) 31
AcsI RAATTY 1 cut(s) 7
AjnI CCWGG 1 cut(s) 74
AleI CACNNNNGTG 1 cut(s) 85
AluBI AGCT 3 cut(s) 54, 503, 521
AluI AGCT 3 cut(s) 54, 503, 521
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 2 cut(s) 98, 224
ApeKI GCWGC 4 cut(s) 269, 326, 329, 500
ApoI RAATTY 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 98, 107
AsuHPI GGTGA 3 cut(s) 82, 391, 421
AsuNHI GCTAGC 1 cut(s) 517
AvaII GGWCC 1 cut(s) 107
BarI GAAGNNNNNNTAC 2 cut(s) 268, 300
BauI CACGAG 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 143
BbvI GCAGC 4 cut(s) 256, 313, 316, 512
BciT130I CCWGG 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 2 cut(s) 222, 518
BisI GCNGC 7 cut(s) 133, 270, 327, 330, 358, 501, 510
BlsI GCNGC 7 cut(s) 134, 271, 328, 331, 359, 502, 511
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 98, 107
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 144
BmtI GCTAGC 1 cut(s) 521
Bpu10I CCTNAGC 2 cut(s) 143, 371
BpuEI CTTGAG 1 cut(s) 18
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 159, 469
Bse3DI GCAATG 3 cut(s) 130, 346, 512
BseBI CCWGG 1 cut(s) 76
BseMI GCAATG 3 cut(s) 130, 346, 512
BseMII CTCAG 3 cut(s) 36, 134, 385
BseNI ACTGG 2 cut(s) 159, 469
BseRI GAGGAG 8 cut(s) 28, 64, 303, 306, 309, 454, 457, 526
BseXI GCAGC 4 cut(s) 256, 313, 316, 512
Bsh1236I CGCG 1 cut(s) 357
BshFI GGCC 2 cut(s) 100, 226
BsiSI CCGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 244
BsnI GGCC 2 cut(s) 100, 226
Bsp143I GATC 1 cut(s) 23
BspACI CCGC 4 cut(s) 132, 357, 377, 509
BspANI GGCC 2 cut(s) 100, 226
BspCNI CTCAG 3 cut(s) 37, 135, 384
BspFNI CGCG 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 535
BspOI GCTAGC 1 cut(s) 521
BspPI GGATC 1 cut(s) 31
BsrDI GCAATG 3 cut(s) 130, 346, 512
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 2 cut(s) 159, 469
BssAI RCCGGY 1 cut(s) 100
BssMI GATC 1 cut(s) 23
BssSI CACGAG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 76
Bst6I CTCTTC 2 cut(s) 168, 188
BstAPI GCANNNNNTGC 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 102, 130, 519
BstDEI CTNAG 3 cut(s) 45, 143, 371
BstEII GGTNACC 1 cut(s) 70
BstFNI CGCG 1 cut(s) 357
BstKTI GATC 1 cut(s) 26
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 1 cut(s) 23
BstMWI GCNNNNNNNGC 5 cut(s) 129, 302, 506, 509, 518
BstNI CCWGG 1 cut(s) 76
BstPI GGTNACC 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 74
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 4 cut(s) 256, 313, 316, 512
BsuRI GGCC 2 cut(s) 100, 226
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 33, 264
Cac8I GCNNGC 3 cut(s) 102, 130, 519
CaiI CAGNNNCTG 1 cut(s) 236
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 98, 107
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 1 cut(s) 528
DdeI CTNAG 3 cut(s) 45, 143, 371
DpnI GATC 1 cut(s) 25
DpnII GATC 1 cut(s) 23
DrdI GACNNNNNNGTC 1 cut(s) 159
DseDI GACNNNNNNGTC 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 168, 188
EarI CTCTTC 2 cut(s) 168, 188
Eco47I GGWCC 1 cut(s) 107
Eco91I GGTNACC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 74
FaeI CATG 1 cut(s) 531
FaiI YATR 3 cut(s) 336, 364, 529
FalI AAGNNNNNCTT 2 cut(s) 292, 324
FatI CATG 1 cut(s) 527
Fnu4HI GCNGC 7 cut(s) 133, 270, 327, 330, 358, 501, 510
Fsp4HI GCNGC 7 cut(s) 133, 270, 327, 330, 358, 501, 510
FspBI CTAG 2 cut(s) 222, 518
GluI GCNGC 7 cut(s) 133, 270, 327, 330, 358, 501, 510
HaeIII GGCC 2 cut(s) 100, 226
HapII CCGG 1 cut(s) 101
Hin1II CATG 1 cut(s) 531
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HpaII CCGG 1 cut(s) 101
HphI GGTGA 3 cut(s) 82, 391, 421
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 3 cut(s) 35, 207, 542
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 66, 123
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 302, 506, 509, 518
HpyF3I CTNAG 3 cut(s) 45, 143, 371
Hsp92II CATG 1 cut(s) 531
KroI GCCGGC 1 cut(s) 100
KroNI GCCGGC 1 cut(s) 102
Kzo9I GATC 1 cut(s) 23
LmnI GCTCC 3 cut(s) 15, 51, 539
Lsp1109I GCAGC 4 cut(s) 256, 313, 316, 512
LweI GCATC 1 cut(s) 144
MaeI CTAG 2 cut(s) 222, 518
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 25
MboI GATC 1 cut(s) 23
MboII GAAGA 4 cut(s) 185, 205, 300, 469
MluCI AATT 2 cut(s) 7, 451
MroNI GCCGGC 1 cut(s) 100
MslI CAYNNNNRTG 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 5 cut(s) 129, 302, 506, 509, 518
NaeI GCCGGC 1 cut(s) 102
NdeII GATC 1 cut(s) 23
NgoMIV GCCGGC 1 cut(s) 100
NheI GCTAGC 1 cut(s) 517
NlaIII CATG 1 cut(s) 531
NlaIV GGNNCC 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 85
PdiI GCCGGC 1 cut(s) 102
PkrI GCNGC 7 cut(s) 134, 271, 328, 331, 359, 502, 511
Psp6I CCWGG 1 cut(s) 74
PspEI GGTNACC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 535
PspPI GGNCC 2 cut(s) 98, 107
PstNI CAGNNNCTG 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 503
RseI CAYNNNNRTG 1 cut(s) 85
SatI GCNGC 7 cut(s) 133, 270, 327, 330, 358, 501, 510
Sau3AI GATC 1 cut(s) 23
Sau96I GGNCC 2 cut(s) 98, 107
ScrFI CCNGG 1 cut(s) 76
SetI ASST 5 cut(s) 56, 72, 425, 505, 523
SfaNI GCATC 1 cut(s) 144
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 2 cut(s) 7, 451
SsiI CCGC 4 cut(s) 132, 357, 377, 509
SspMI CTAG 2 cut(s) 222, 518
StyD4I CCNGG 1 cut(s) 74
TaqI TCGA 1 cut(s) 480
TasI AATT 2 cut(s) 7, 451
TauI GCSGC 3 cut(s) 135, 360, 512
TscAI CASTG 2 cut(s) 33, 271
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 4 cut(s) 269, 326, 329, 500
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 2 cut(s) 33, 271
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 1 cut(s) 7
XspI CTAG 2 cut(s) 222, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.