Prupe.6G316000_v2.0.a1

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014983
Physical Location & Seq
Forward (+)
28148979 .. 28150523
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G316000.1

Sequence Viewer

Length: 447 bp
ATGATGAATTGGGGGAGAAGATTTGTGGCTTTAGATAGTGTTTTGGGGAGAAAGGAACCATTTCCTCAAGCTATGAATGGGAACAAGAAGCGCTGCTCCGACTGCATGACCACTGAGACACCCTTGTGGAGAGGTGGCCCAGCTGGGCCCAAGTCACTGTGCAATGCATGTGGGATCAGACACAGGAAGAGAGGAATTCCTACTGTGAGCTTGATGAGCAAAGCGCCAAAGAGGAGGAAAGAGAAAATATGTGGCGGTAGTAGCAGTACTATCACAACCACATATAATATTGCTGCTTCTGCCACATACAATAATGCTTCTGCCACAACAGCCAAAAGCACTTTTGGTAGTGGTGGTGGTGGCATAAATTTGAATGAGCCTCCTGAGGTGAGGTTTGTGGGTTTTGGTGAGGAGGTGTTTTTGCAAGACTCGCAGGCAGAGGGGGAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

149

Amino Acids

15.99

Weight (kDa)

9.67

Isoelectric Point (pI)

61.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26930
fragaria_vesca FvH4_6g07120
malus_domestica MD12G1208800.v1.1
prunus_persica Prupe.6G316000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0456711
rosa_laevigata RLG00000025282
rosa_multiflora Rmu_sc0000133.1_g000027 Rmu_sc0037422.1_g000001
rosa_roxburghii Rroxscaffold_11G00450380 Rroxscaffold_6G00422520
rosa_rugosa Rorug03G0015200
rosa_samantha Rh3AG075700 Rh3BG077600 Rh3CG077400 Rh3DG079300
rosa_wichuraiana Rw3G006490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 255
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 2 cut(s) 195, 367
AfaI GTAC 1 cut(s) 268
AfeI AGCGCT 1 cut(s) 92
AgsI TTSAA 1 cut(s) 373
AleI CACNNNNGTG 1 cut(s) 124
AluBI AGCT 3 cut(s) 71, 143, 210
AluI AGCT 3 cut(s) 71, 143, 210
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 182
Aor51HI AGCGCT 1 cut(s) 92
AoxI GGCC 2 cut(s) 136, 146
ApaI GGGCCC 1 cut(s) 150
ApeKI GCWGC 2 cut(s) 93, 293
ApoI RAATTY 2 cut(s) 195, 367
Asp700I GAANNNNTTC 1 cut(s) 60
AspLEI GCGC 2 cut(s) 93, 226
AspS9I GGNCC 3 cut(s) 137, 146, 147
AsuHPI GGTGA 2 cut(s) 400, 419
AxyI CCTNAGG 1 cut(s) 384
BaeGI GKGCMC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 80, 280
BcoDI GTCTC 1 cut(s) 110
BfoI RGCGCY 2 cut(s) 94, 227
BisI GCNGC 2 cut(s) 94, 294
BlsI GCNGC 2 cut(s) 95, 295
BmcAI AGTACT 1 cut(s) 268
BmgT120I GGNCC 3 cut(s) 137, 146, 147
BmiI GGNNCC 2 cut(s) 57, 148
BpuEI CTTGAG 1 cut(s) 51
Bse21I CCTNAGG 1 cut(s) 384
Bse3DI GCAATG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 105, 375
BseRI GAGGAG 2 cut(s) 247, 425
BseSI GKGCMC 1 cut(s) 150
BseXI GCAGC 2 cut(s) 80, 280
BseYI CCCAGC 2 cut(s) 139, 143
BshFI GGCC 2 cut(s) 138, 148
BsmAI GTCTC 1 cut(s) 110
BsnI GGCC 2 cut(s) 138, 148
Bsp120I GGGCCC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 255
BspANI GGCC 2 cut(s) 138, 148
BspCNI CTCAG 2 cut(s) 106, 376
BspLI GGNNCC 2 cut(s) 57, 148
BspPI GGATC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 169
BssMI GATC 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 159, 205
Bst6I CTCTTC 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 2 cut(s) 114, 384
BstH2I RGCGCY 2 cut(s) 94, 227
BstHHI GCGC 2 cut(s) 93, 226
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 6 cut(s) 102, 216, 261, 299, 329, 430
BstNSI RCATGY 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 80, 280
Bsu36I CCTNAGG 1 cut(s) 384
BsuRI GGCC 2 cut(s) 138, 148
BtsIMutI CAGTG 2 cut(s) 111, 155
Cac8I GCNNGC 1 cut(s) 435
CfoI GCGC 2 cut(s) 93, 226
Cfr13I GGNCC 3 cut(s) 137, 146, 147
Csp6I GTAC 1 cut(s) 267
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 2 cut(s) 106, 168
CviJI RGCY 8 cut(s) 29, 71, 138, 143, 148, 210, 332, 379
CviKI_1 RGCY 8 cut(s) 29, 71, 138, 143, 148, 210, 332, 379
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 2 cut(s) 114, 384
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 150
Eco47III AGCGCT 1 cut(s) 92
Eco81I CCTNAGG 1 cut(s) 384
EcoRI GAATTC 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 2 cut(s) 109, 171
FaiI YATR 8 cut(s) 74, 107, 169, 250, 283, 285, 307, 365
FatI CATG 2 cut(s) 105, 167
Fnu4HI GCNGC 2 cut(s) 94, 294
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 94, 294
GlaI GCGC 2 cut(s) 92, 225
GluI GCNGC 2 cut(s) 94, 294
GsaI CCCAGC 2 cut(s) 143, 147
HaeII RGCGCY 2 cut(s) 94, 227
HaeIII GGCC 2 cut(s) 138, 148
HhaI GCGC 2 cut(s) 93, 226
Hin1II CATG 2 cut(s) 109, 171
Hin6I GCGC 2 cut(s) 91, 224
HinP1I GCGC 2 cut(s) 91, 224
HinfI GANTC 1 cut(s) 428
HphI GGTGA 2 cut(s) 400, 419
Hpy188I TCNGA 2 cut(s) 100, 179
Hpy188III TCNNGA 1 cut(s) 383
HpyCH4III ACNGT 2 cut(s) 159, 205
HpyCH4V TGCA 4 cut(s) 105, 162, 167, 424
HpyF10VI GCNNNNNNNGC 6 cut(s) 102, 216, 261, 299, 329, 430
HpyF3I CTNAG 2 cut(s) 114, 384
Hsp92II CATG 2 cut(s) 109, 171
HspAI GCGC 2 cut(s) 91, 224
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 5 cut(s) 129, 153, 169, 396, 419
Lsp1109I GCAGC 2 cut(s) 80, 280
MaeIII GTNAC 1 cut(s) 153
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 2 cut(s) 30, 199
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 3 cut(s) 7, 195, 367
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 123
Mph1103I ATGCAT 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 124
MspA1I CMGCKG 1 cut(s) 143
MwoI GCNNNNNNNGC 6 cut(s) 102, 216, 261, 299, 329, 430
NdeII GATC 1 cut(s) 174
NlaIII CATG 2 cut(s) 109, 171
NlaIV GGNNCC 2 cut(s) 57, 148
NmuCI GTSAC 1 cut(s) 153
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 171
OliI CACNNNNGTG 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 60
PkrI GCNGC 2 cut(s) 95, 295
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
PspFI CCCAGC 2 cut(s) 139, 143
PspN4I GGNNCC 2 cut(s) 57, 148
PspOMI GGGCCC 1 cut(s) 146
PspPI GGNCC 3 cut(s) 137, 146, 147
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 124
SatI GCNGC 2 cut(s) 94, 294
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 3 cut(s) 137, 146, 147
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 1 cut(s) 422
SduI GDGCHC 1 cut(s) 150
SetI ASST 7 cut(s) 73, 136, 145, 212, 390, 395, 417
SmiMI CAYNNNNRTG 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 3 cut(s) 7, 195, 367
SsiI CCGC 1 cut(s) 255
SspI AATATT 1 cut(s) 289
TaaI ACNGT 2 cut(s) 159, 205
TasI AATT 3 cut(s) 7, 195, 367
TatI WGTACW 1 cut(s) 266
TscAI CASTG 2 cut(s) 118, 162
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 2 cut(s) 93, 293
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 2 cut(s) 20, 89
TspRI CASTG 2 cut(s) 118, 162
XapI RAATTY 2 cut(s) 195, 367
XceI RCATGY 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.