Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014983

Physical Location & Seq

Genomic Coordinates Forward (+)

43577422 .. 43579542

Gene Structure 2121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025282

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGATCAGTGGCTCAAGAGGGTGCTGAGAGGAGCTGTGTTGACTGCAAGGTGACCAGGACACCGTTGTGGAGAAGTGGGCCGGCTGGTCCAAAGACCCTGTGCAATGCCTGCGGCATCAGGCTGAGAAAACGACTCGCCAGTCTGAACCCTGAAGACAAAGCAAACAAGGGGAAGAGAAAGAAATCCAGAACAGAAAGAACTAGGCCAACAGCCTCTGTCTCCACTAATGGCTCAACAACAAACACTGCTGCTGGTAAAAGCACTTCCACAACAGCCAAAAGTGCTTCTCCTCCTCCTCCTCCTCCTGCTGCTGCTTATGGCAATGCTCGTGGCAGTCGCGGCACCTACTTGCTCAGGGCGGTGAGGATTGTTGCGAATAAACAGAGAGTGGTGAGAAAGTTGAGGTGGTGCTTCCAAAGGAGGAGGAGGACTAATTTTAGGAGGACTGGTTTTTACTTCTTCGACAAAAATGTGGAACAAGCAGCTGTGGCGGCACTGCTAGCTCTCTCATGTGGCTCCGCTCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

178

Amino Acids

19.21

Weight (kDa)

11.4

Isoelectric Point (pI)

56.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	13 - 45	2.1e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26930
fragaria_vesca	FvH4_6g07120
malus_domestica	MD12G1208800.v1.1
prunus_persica	Prupe.6G316000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456711
rosa_laevigata	RLG00000025282
rosa_multiflora	Rmu_sc0000133.1_g000027 Rmu_sc0037422.1_g000001
rosa_roxburghii	Rroxscaffold_11G00450380 Rroxscaffold_6G00422520
rosa_rugosa	Rorug03G0015200
rosa_samantha	Rh3AG075700 Rh3BG077600 Rh3CG077400 Rh3DG079300
rosa_wichuraiana	Rw3G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	344
AccBSI	CCGCTC	1 cut(s)	524
AccII	CGCG	1 cut(s)	342
AciI	CCGC	5 cut(s)	114, 342, 362, 494, 522
AclWI	GGATC	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	56
AleI	CACNNNNGTG	1 cut(s)	67
AluBI	AGCT	3 cut(s)	36, 488, 506
AluI	AGCT	3 cut(s)	36, 488, 506
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	13
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	80, 206
ApeKI	GCWGC	4 cut(s)	251, 311, 314, 485
AspS9I	GGNCC	2 cut(s)	80, 89
AsuHPI	GGTGA	3 cut(s)	64, 376, 406
AsuNHI	GCTAGC	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	344
BarI	GAAGNNNNNNTAC	2 cut(s)	250, 282
BauI	CACGAG	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	4 cut(s)	238, 298, 301, 497
BciT130I	CCWGG	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	2 cut(s)	204, 503
BisI	GCNGC	7 cut(s)	115, 252, 312, 315, 343, 486, 495
BlsI	GCNGC	7 cut(s)	116, 253, 313, 316, 344, 487, 496
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	80, 89
BmiI	GGNNCC	2 cut(s)	346, 520
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	126
BmtI	GCTAGC	1 cut(s)	506
BpiI	GAAGAC	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	436, 466
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	2 cut(s)	141, 454
Bse3DI	GCAATG	2 cut(s)	112, 331
BseBI	CCWGG	1 cut(s)	58
BseMI	GCAATG	2 cut(s)	112, 331
BseMII	CTCAG	3 cut(s)	18, 116, 370
BseNI	ACTGG	2 cut(s)	141, 454
BseRI	GAGGAG	8 cut(s)	46, 282, 285, 288, 291, 294, 439, 442
BseXI	GCAGC	4 cut(s)	238, 298, 301, 497
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	82, 208
BshNI	GGYRCC	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	82, 208
Bsp143I	GATC	1 cut(s)	5
BspACI	CCGC	5 cut(s)	114, 342, 362, 494, 522
BspANI	GGCC	2 cut(s)	82, 208
BspCNI	CTCAG	3 cut(s)	19, 117, 369
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	346, 520
BspOI	GCTAGC	1 cut(s)	506
BspPI	GGATC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	344
BsrBI	CCGCTC	1 cut(s)	524
BsrDI	GCAATG	2 cut(s)	112, 331
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	141, 454
BssAI	RCCGGY	1 cut(s)	82
BssMI	GATC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	84, 112, 504
BstDEI	CTNAG	3 cut(s)	27, 125, 356
BstEII	GGTNACC	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	1 cut(s)	8
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 284, 342, 491, 494, 503
BstNI	CCWGG	1 cut(s)	58
BstPI	GGTNACC	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	56
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	4 cut(s)	238, 298, 301, 497
BstV2I	GAAGAC	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	82, 208
BtsI	GCAGTG	2 cut(s)	246, 497
BtsIMutI	CAGTG	3 cut(s)	15, 246, 497
Cac8I	GCNNGC	3 cut(s)	84, 112, 504
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	80, 89
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	1 cut(s)	513
DdeI	CTNAG	3 cut(s)	27, 125, 356
DpnI	GATC	1 cut(s)	7
DpnII	GATC	1 cut(s)	5
DrdI	GACNNNNNNGTC	1 cut(s)	141
DseDI	GACNNNNNNGTC	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	52
EcoO65I	GGTNACC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	56
FaeI	CATG	1 cut(s)	516
FaiI	YATR	2 cut(s)	321, 514
FatI	CATG	1 cut(s)	512
Fnu4HI	GCNGC	7 cut(s)	115, 252, 312, 315, 343, 486, 495
Fsp4HI	GCNGC	7 cut(s)	115, 252, 312, 315, 343, 486, 495
FspBI	CTAG	2 cut(s)	204, 503
GluI	GCNGC	7 cut(s)	115, 252, 312, 315, 343, 486, 495
HaeIII	GGCC	2 cut(s)	82, 208
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	1 cut(s)	516
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	3 cut(s)	64, 376, 406
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	3 cut(s)	17, 189, 527
Hpy8I	GTNNAC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	48, 105
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 284, 342, 491, 494, 503
HpyF3I	CTNAG	3 cut(s)	27, 125, 356
Hsp92II	CATG	1 cut(s)	516
KroI	GCCGGC	1 cut(s)	82
KroNI	GCCGGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	5
LmnI	GCTCC	2 cut(s)	33, 524
Lsp1109I	GCAGC	4 cut(s)	238, 298, 301, 497
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	2 cut(s)	204, 503
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	7
MbiI	CCGCTC	1 cut(s)	524
MboI	GATC	1 cut(s)	5
MboII	GAAGA	3 cut(s)	167, 187, 454
MluCI	AATT	1 cut(s)	436
MlyI	GAGTC	1 cut(s)	129
MroNI	GCCGGC	1 cut(s)	82
MslI	CAYNNNNRTG	1 cut(s)	67
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	58
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	6 cut(s)	111, 284, 342, 491, 494, 503
NaeI	GCCGGC	1 cut(s)	84
NdeII	GATC	1 cut(s)	5
NgoMIV	GCCGGC	1 cut(s)	82
NheI	GCTAGC	1 cut(s)	502
NlaIII	CATG	1 cut(s)	516
NlaIV	GGNNCC	2 cut(s)	346, 520
NmuCI	GTSAC	1 cut(s)	52
OliI	CACNNNNGTG	1 cut(s)	67
PdiI	GCCGGC	1 cut(s)	84
PkrI	GCNGC	7 cut(s)	116, 253, 313, 316, 344, 487, 496
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	56
PspEI	GGTNACC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	346, 520
PspPI	GGNCC	2 cut(s)	80, 89
PstNI	CAGNNNCTG	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	488
RseI	CAYNNNNRTG	1 cut(s)	67
SatI	GCNGC	7 cut(s)	115, 252, 312, 315, 343, 486, 495
Sau3AI	GATC	1 cut(s)	5
Sau96I	GGNCC	2 cut(s)	80, 89
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	6 cut(s)	38, 54, 350, 410, 490, 508
SfaNI	GCATC	1 cut(s)	126
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	436
SsiI	CCGC	5 cut(s)	114, 342, 362, 494, 522
SspMI	CTAG	2 cut(s)	204, 503
StyD4I	CCNGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	465
TasI	AATT	1 cut(s)	436
TauI	GCSGC	3 cut(s)	117, 345, 497
TscAI	CASTG	3 cut(s)	15, 253, 504
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	4 cut(s)	251, 311, 314, 485
Tsp45I	GTSAC	1 cut(s)	52
TspRI	CASTG	3 cut(s)	15, 253, 504
VpaK11BI	GGWCC	1 cut(s)	89
XspI	CTAG	2 cut(s)	204, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.