FvH4_6g07120

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014983
Physical Location & Seq
Reverse (-)
4289336 .. 4290838
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07120.t1

Sequence Viewer

Length: 429 bp
ATGCAGTTGAGGAGCCAGCGGCGATCAATAATGGTGGAAGAGAGTGGGGAGGAGACTAGTCCTATGAGGAGCTGTAAGGAATGTAATACGACTAAAACACCATTGTGGCGAAAGGGAGCAGACGGGAAAAATACACTTTGCAATGCCTGCGGCCTCAGGCGGAAGAAACGACTTACCAAAGTACTGGACGCAGAAAGCAGAGCAAAGAAGGGGAAGAAAACCACGCCCAGAAAACCAAGAATTCATACTGCTGGCTCAACAACCAACAGAGGAAGAGGACTACTGGGAATCGAGACAGTGATGAAAAAACGGAGGAGCTACAACCGGAAGATGTGGACGATGGAAAAGGACCAACAACTAGCTGTGGCAGCACTGCTAGAGCTAGCTGGCTCAGCTCTTGTTAAACTCTCTGATAGTAACTTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

143

Amino Acids

16.06

Weight (kDa)

10.52

Isoelectric Point (pI)

60.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 25 - 59 6.3e-14 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26930
fragaria_vesca FvH4_6g07120
malus_domestica MD12G1208800.v1.1
prunus_persica Prupe.6G316000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0456711
rosa_laevigata RLG00000025282
rosa_multiflora Rmu_sc0000133.1_g000027 Rmu_sc0037422.1_g000001
rosa_roxburghii Rroxscaffold_11G00450380 Rroxscaffold_6G00422520
rosa_rugosa Rorug03G0015200
rosa_samantha Rh3AG075700 Rh3BG077600 Rh3CG077400 Rh3DG079300
rosa_wichuraiana Rw3G006490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 19, 150, 160
AcsI RAATTY 1 cut(s) 240
AfaI GTAC 1 cut(s) 183
AhlI ACTAGT 1 cut(s) 56
AleI CACNNNNGTG 1 cut(s) 103
AluBI AGCT 6 cut(s) 72, 318, 362, 382, 386, 395
AluI AGCT 6 cut(s) 72, 318, 362, 382, 386, 395
Alw26I GTCTC 2 cut(s) 47, 287
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 349
AsuNHI GCTAGC 1 cut(s) 382
AvaII GGWCC 1 cut(s) 349
AxyI CCTNAGG 1 cut(s) 155
BbvI GCAGC 1 cut(s) 380
BccI CCATC 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 47, 287
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 4 cut(s) 57, 359, 377, 383
BisI GCNGC 3 cut(s) 20, 151, 369
BlpI GCTNAGC 1 cut(s) 391
BlsI GCNGC 3 cut(s) 21, 152, 370
BmcAI AGTACT 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 293
BmtI GCTAGC 1 cut(s) 386
BmuI ACTGGG 1 cut(s) 293
Bpu1102I GCTNAGC 1 cut(s) 391
BsaWI WCCGGW 1 cut(s) 324
Bse1I ACTGG 2 cut(s) 189, 288
Bse21I CCTNAGG 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 169, 405
BseNI ACTGG 2 cut(s) 189, 288
BseRI GAGGAG 4 cut(s) 25, 65, 82, 328
BseXI GCAGC 1 cut(s) 380
BshFI GGCC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 325
BsmAI GTCTC 2 cut(s) 47, 287
BsnI GGCC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 23
Bsp1720I GCTNAGC 1 cut(s) 391
BspACI CCGC 3 cut(s) 19, 150, 160
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 2 cut(s) 168, 404
BspLI GGNNCC 1 cut(s) 14
BspOI GCTAGC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 2 cut(s) 189, 288
BssMI GATC 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 2 cut(s) 33, 268
BstAPI GCANNNNNTGC 1 cut(s) 147
BstC8I GCNNGC 5 cut(s) 17, 148, 253, 384, 388
BstDEI CTNAG 2 cut(s) 155, 391
BstKTI GATC 1 cut(s) 26
BstMAI GTCTC 2 cut(s) 47, 287
BstMBI GATC 1 cut(s) 23
BstMWI GCNNNNNNNGC 3 cut(s) 147, 368, 392
BstV1I GCAGC 1 cut(s) 380
BstXI CCANNNNNNTGG 1 cut(s) 184
Bsu36I CCTNAGG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 371
BtsIMutI CAGTG 2 cut(s) 303, 371
Cac8I GCNNGC 5 cut(s) 17, 148, 253, 384, 388
Cfr13I GGNCC 1 cut(s) 349
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 182
CspCI CAANNNNNGTGG 2 cut(s) 15, 50
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 155, 391
DpnI GATC 1 cut(s) 25
DpnII GATC 1 cut(s) 23
Eam1104I CTCTTC 2 cut(s) 33, 268
EarI CTCTTC 2 cut(s) 33, 268
EciI GGCGGA 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 349
Eco81I CCTNAGG 1 cut(s) 155
EcoRI GAATTC 1 cut(s) 240
FaiI YATR 2 cut(s) 65, 246
Fnu4HI GCNGC 3 cut(s) 20, 151, 369
Fsp4HI GCNGC 3 cut(s) 20, 151, 369
FspBI CTAG 4 cut(s) 57, 359, 377, 383
GluI GCNGC 3 cut(s) 20, 151, 369
HaeIII GGCC 1 cut(s) 153
HapII CCGG 1 cut(s) 325
HgaI GACGC 1 cut(s) 197
HinfI GANTC 1 cut(s) 288
HpaII CCGG 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 2 cut(s) 4, 141
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 368, 392
HpyF3I CTNAG 2 cut(s) 155, 391
Kzo9I GATC 1 cut(s) 23
LmnI GCTCC 4 cut(s) 12, 69, 116, 315
LpnPI CCDG 9 cut(s) 29, 142, 160, 170, 237, 241, 269, 338, 372
Lsp1109I GCAGC 1 cut(s) 380
MaeI CTAG 4 cut(s) 57, 359, 377, 383
MaeIII GTNAC 1 cut(s) 416
MalI GATC 1 cut(s) 25
MboI GATC 1 cut(s) 23
MboII GAAGA 5 cut(s) 50, 175, 226, 285, 340
MluCI AATT 1 cut(s) 240
MnlI CCTC 7 cut(s) 3, 43, 60, 164, 263, 269, 306
MseI TTAA 1 cut(s) 402
MslI CAYNNNNRTG 1 cut(s) 103
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 1 cut(s) 325
MwoI GCNNNNNNNGC 3 cut(s) 147, 368, 392
NdeII GATC 1 cut(s) 23
NheI GCTAGC 1 cut(s) 382
NlaIV GGNNCC 1 cut(s) 14
OliI CACNNNNGTG 1 cut(s) 103
PfeI GAWTC 1 cut(s) 288
PkrI GCNGC 3 cut(s) 21, 152, 370
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 1 cut(s) 349
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 103
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 3 cut(s) 20, 151, 369
Sau3AI GATC 1 cut(s) 23
Sau96I GGNCC 1 cut(s) 349
ScaI AGTACT 1 cut(s) 183
SetI ASST 6 cut(s) 74, 320, 364, 384, 388, 397
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 103
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 1 cut(s) 240
SsiI CCGC 3 cut(s) 19, 150, 160
SspMI CTAG 4 cut(s) 57, 359, 377, 383
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 291
TasI AATT 1 cut(s) 240
TatI WGTACW 1 cut(s) 181
TauI GCSGC 2 cut(s) 22, 153
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 2 cut(s) 303, 378
TseI GCWGC 1 cut(s) 368
TspDTI ATGAA 2 cut(s) 233, 317
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 2 cut(s) 303, 378
VpaK11BI GGWCC 1 cut(s) 349
XapI RAATTY 1 cut(s) 240
XspI CTAG 4 cut(s) 57, 359, 377, 383
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.