Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0014983

Physical Location & Seq

Genomic Coordinates Reverse (-)

6130724 .. 6132057

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G006490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATCAATTTGAGGAGCAAGGGATCGGTGGCTGAAGAGAGTGCTGAGAGGAGCTGTGTTGACTGCAAGGTGACCAGGACACCATTGTGGAGAAGTGGGCCGGCTGGTCCAAAGACCCTGTGCAATGCCTGCGGCATCAGGCTGAGGAAACGACTTGCCAGTCTGAACCCAGAAGACAAAGCAAACAAGGGGAAGAGAAAGAAATCCAGAACAGAAAGAACTAGGCCAACAGCCTCTGTCTCCACTAATGGCTCAACAACAAACACTGCTGCTGGTAAAAGCACTTCCACAACAGCCAAAAGTGCTTCTCCTCCTCCTCCTCCTCCTGCTGCTTATGGCAATGCTCGTGGCAGTCGCGGCACATACTTGCTCAGGGCGGTGAGGATTGTTGCGAATAAACAGAGAGTGGTGAGAAAGTTGAGGTGGTGCTTCCAAAGGAGGAGGAGGACTAATTTTAGGAGGACTGGTTTTTACTTCTTCGACAAAAATGTGGAACAAGCAGCTGTGGCGGCATTGCTAGCCCTCTCATGTGGCTCGTCTCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

182

Amino Acids

19.9

Weight (kDa)

11.39

Isoelectric Point (pI)

61.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	19 - 51	2.2e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26930
fragaria_vesca	FvH4_6g07120
malus_domestica	MD12G1208800.v1.1
prunus_persica	Prupe.6G316000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0456711
rosa_laevigata	RLG00000025282
rosa_multiflora	Rmu_sc0000133.1_g000027 Rmu_sc0037422.1_g000001
rosa_roxburghii	Rroxscaffold_11G00450380 Rroxscaffold_6G00422520
rosa_rugosa	Rorug03G0015200
rosa_samantha	Rh3AG075700 Rh3BG077600 Rh3CG077400 Rh3DG079300
rosa_wichuraiana	Rw3G006490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	159
AccII	CGCG	1 cut(s)	357
AciI	CCGC	4 cut(s)	132, 357, 377, 509
AclWI	GGATC	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	54
AjnI	CCWGG	1 cut(s)	74
AleI	CACNNNNGTG	1 cut(s)	85
AluBI	AGCT	2 cut(s)	54, 503
AluI	AGCT	2 cut(s)	54, 503
Alw26I	GTCTC	2 cut(s)	244, 543
AlwI	GGATC	1 cut(s)	31
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	2 cut(s)	98, 224
ApeKI	GCWGC	3 cut(s)	269, 329, 500
AspS9I	GGNCC	2 cut(s)	98, 107
AsuHPI	GGTGA	3 cut(s)	82, 391, 421
AsuNHI	GCTAGC	1 cut(s)	517
AvaII	GGWCC	1 cut(s)	107
BarI	GAAGNNNNNNTAC	2 cut(s)	268, 300
BauI	CACGAG	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	256, 316, 512
BciT130I	CCWGG	1 cut(s)	76
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	244, 543
BfaI	CTAG	2 cut(s)	222, 518
BisI	GCNGC	6 cut(s)	133, 270, 330, 358, 501, 510
BlsI	GCNGC	6 cut(s)	134, 271, 331, 359, 502, 511
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	98, 107
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	144
BmtI	GCTAGC	1 cut(s)	521
BpiI	GAAGAC	1 cut(s)	180
Bpu10I	CCTNAGC	2 cut(s)	143, 371
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	159, 469
Bse3DI	GCAATG	3 cut(s)	130, 346, 512
BseBI	CCWGG	1 cut(s)	76
BseMI	GCAATG	3 cut(s)	130, 346, 512
BseMII	CTCAG	3 cut(s)	36, 134, 385
BseNI	ACTGG	2 cut(s)	159, 469
BseRI	GAGGAG	9 cut(s)	28, 64, 300, 303, 306, 309, 312, 454, 457
BseXI	GCAGC	3 cut(s)	256, 316, 512
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	100, 226
BsiSI	CCGG	1 cut(s)	101
BsmAI	GTCTC	2 cut(s)	244, 543
BsmBI	CGTCTC	1 cut(s)	543
BsnI	GGCC	2 cut(s)	100, 226
Bsp143I	GATC	2 cut(s)	3, 23
BspACI	CCGC	4 cut(s)	132, 357, 377, 509
BspANI	GGCC	2 cut(s)	100, 226
BspCNI	CTCAG	3 cut(s)	37, 135, 384
BspFNI	CGCG	1 cut(s)	357
BspOI	GCTAGC	1 cut(s)	521
BspPI	GGATC	1 cut(s)	31
BsrDI	GCAATG	3 cut(s)	130, 346, 512
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	159, 469
BssAI	RCCGGY	1 cut(s)	100
BssMI	GATC	2 cut(s)	3, 23
BssSI	CACGAG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	30, 188
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	102, 130, 519
BstDEI	CTNAG	3 cut(s)	45, 143, 371
BstEII	GGTNACC	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	357
BstKTI	GATC	2 cut(s)	6, 26
BstMAI	GTCTC	2 cut(s)	244, 543
BstMBI	GATC	2 cut(s)	3, 23
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 302, 357, 506, 509, 518
BstNI	CCWGG	1 cut(s)	76
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	74
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	3 cut(s)	256, 316, 512
BstV2I	GAAGAC	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	100, 226
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	3 cut(s)	102, 130, 519
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	98, 107
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	1 cut(s)	528
DdeI	CTNAG	3 cut(s)	45, 143, 371
DpnI	GATC	2 cut(s)	5, 25
DpnII	GATC	2 cut(s)	3, 23
DrdI	GACNNNNNNGTC	1 cut(s)	159
DseDI	GACNNNNNNGTC	1 cut(s)	159
Eam1104I	CTCTTC	2 cut(s)	30, 188
EarI	CTCTTC	2 cut(s)	30, 188
Eco47I	GGWCC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	54
Eco91I	GGTNACC	1 cut(s)	70
EcoO65I	GGTNACC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	74
Esp3I	CGTCTC	1 cut(s)	543
FaeI	CATG	1 cut(s)	531
FaiI	YATR	3 cut(s)	336, 364, 529
FatI	CATG	1 cut(s)	527
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	6 cut(s)	133, 270, 330, 358, 501, 510
Fsp4HI	GCNGC	6 cut(s)	133, 270, 330, 358, 501, 510
FspBI	CTAG	2 cut(s)	222, 518
GluI	GCNGC	6 cut(s)	133, 270, 330, 358, 501, 510
HaeIII	GGCC	2 cut(s)	100, 226
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	3 cut(s)	82, 391, 421
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	207, 542
Hpy8I	GTNNAC	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	66, 123
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 302, 357, 506, 509, 518
HpyF3I	CTNAG	3 cut(s)	45, 143, 371
Hsp92II	CATG	1 cut(s)	531
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 23
LmnI	GCTCC	2 cut(s)	15, 51
Lsp1109I	GCAGC	3 cut(s)	256, 316, 512
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	2 cut(s)	222, 518
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	5, 25
MboI	GATC	2 cut(s)	3, 23
MboII	GAAGA	4 cut(s)	47, 185, 205, 469
MluCI	AATT	2 cut(s)	7, 451
MroNI	GCCGGC	1 cut(s)	100
MslI	CAYNNNNRTG	1 cut(s)	85
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	6 cut(s)	129, 302, 357, 506, 509, 518
NaeI	GCCGGC	1 cut(s)	102
NdeII	GATC	2 cut(s)	3, 23
NgoMIV	GCCGGC	1 cut(s)	100
NheI	GCTAGC	1 cut(s)	517
NlaIII	CATG	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	70
OliI	CACNNNNGTG	1 cut(s)	85
PdiI	GCCGGC	1 cut(s)	102
PkrI	GCNGC	6 cut(s)	134, 271, 331, 359, 502, 511
Psp6I	CCWGG	1 cut(s)	74
PspEI	GGTNACC	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	74
PspPI	GGNCC	2 cut(s)	98, 107
PstNI	CAGNNNCTG	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	85
SatI	GCNGC	6 cut(s)	133, 270, 330, 358, 501, 510
Sau3AI	GATC	2 cut(s)	3, 23
Sau96I	GGNCC	2 cut(s)	98, 107
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	4 cut(s)	56, 72, 425, 505
SfaNI	GCATC	1 cut(s)	144
SinI	GGWCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	85
Sse9I	AATT	2 cut(s)	7, 451
SsiI	CCGC	4 cut(s)	132, 357, 377, 509
SspMI	CTAG	2 cut(s)	222, 518
StyD4I	CCNGG	1 cut(s)	74
TaqI	TCGA	1 cut(s)	480
TasI	AATT	2 cut(s)	7, 451
TauI	GCSGC	3 cut(s)	135, 360, 512
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	3 cut(s)	269, 329, 500
Tsp45I	GTSAC	1 cut(s)	70
TspRI	CASTG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	107
XspI	CTAG	2 cut(s)	222, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.