MD12G1208800.v1.1

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0014983
Physical Location & Seq
Forward (+)
28806991 .. 28808765
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1208800.v1.1.491

Sequence Viewer

Length: 528 bp
ATGGATCTGAGAAGAAAGGTAATTCAGGATATGAACGTGAAGAATGTGAAGAACAAGAAGTTCTGCACTGACTGCAAAGCCACTGAGACGCCCTTGTGGAGGAGTGGCCCGGCTGGGCCCAAGTCACTGTGCAATGCTTGTGGGATCAGATACAGGAAGAAAATTCCTACTGTGAGTATGTGCAAGGGACCAAAGAGGTGGAAGAAAGACAAAACATATGGCGGCAGCAGCAGCACCAGTACAATCACCACCCCAGCCACCACAAACACTGCTGCTTCTGCTTCTGCCACCACCACCACGAGCACCACTGCCAGAAAAGCCAAAATTGGTGGCAGTGGTGGTGGTAGCACAGGCTTGAGTGAGTCACTGCAGGTGAAGTTAGTGGCTTTTGGGAAGGATGTGTGCCTGCAAGGCACACCACCAGTGCAGAAGAAAAGGAGGTACCAAAAGAGGAGGAGGGAGATGGGAGAGGTGGAGCAAGCAGCTGTGTGCTTGCTGGCCATGTCATCTCACTCTGTTTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

176

Amino Acids

18.82

Weight (kDa)

10.24

Isoelectric Point (pI)

57.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 22 - 54 5.7e-17 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26930
fragaria_vesca FvH4_6g07120
malus_domestica MD12G1208800.v1.1
prunus_persica Prupe.6G316000_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0456711
rosa_laevigata RLG00000025282
rosa_multiflora Rmu_sc0000133.1_g000027 Rmu_sc0037422.1_g000001
rosa_roxburghii Rroxscaffold_11G00450380 Rroxscaffold_6G00422520
rosa_rugosa Rorug03G0015200
rosa_samantha Rh3AG075700 Rh3BG077600 Rh3CG077400 Rh3DG079300
rosa_wichuraiana Rw3G006490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 361
Acc36I ACCTGC 1 cut(s) 361
Acc65I GGTACC 1 cut(s) 441
AccB1I GGYRCC 1 cut(s) 441
AciI CCGC 1 cut(s) 222
AclWI GGATC 2 cut(s) 12, 152
AcoI YGGCCR 1 cut(s) 498
AcsI RAATTY 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 2 cut(s) 241, 443
AfiI CCNNNNNNNGG 1 cut(s) 99
AluBI AGCT 1 cut(s) 485
AluI AGCT 1 cut(s) 485
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 2 cut(s) 12, 152
AoxI GGCC 3 cut(s) 106, 116, 498
ApaI GGGCCC 1 cut(s) 120
ApeKI GCWGC 5 cut(s) 225, 228, 231, 272, 482
ApoI RAATTY 1 cut(s) 162
Asp718I GGTACC 1 cut(s) 441
AspS9I GGNCC 4 cut(s) 107, 116, 117, 188
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 238, 385
AvaII GGWCC 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 120
BalI TGGCCA 1 cut(s) 500
BanI GGYRCC 1 cut(s) 441
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 5 cut(s) 237, 240, 243, 259, 494
BccI CCATC 1 cut(s) 457
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 368
BfuAI ACCTGC 1 cut(s) 361
BglI GCCNNNNNGGC 1 cut(s) 411
BisI GCNGC 6 cut(s) 223, 226, 229, 232, 273, 483
BlsI GCNGC 6 cut(s) 224, 227, 230, 233, 274, 484
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 4 cut(s) 107, 116, 117, 188
BmiI GGNNCC 3 cut(s) 118, 189, 443
BmrFI CCNGG 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 376
BpuMI CCSGG 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 2 cut(s) 237, 422
Bse3DI GCAATG 1 cut(s) 139
BseGI GGATG 1 cut(s) 403
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 237, 422
BseRI GAGGAG 3 cut(s) 115, 466, 469
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 5 cut(s) 237, 240, 243, 259, 494
BseYI CCCAGC 2 cut(s) 113, 253
BsgI GTGCAG 2 cut(s) 49, 446
BshFI GGCC 3 cut(s) 108, 118, 500
BshNI GGYRCC 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 80
BsmBI CGTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 3 cut(s) 108, 118, 500
Bsp120I GGGCCC 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 120, 305
Bsp143I GATC 2 cut(s) 4, 144
BspACI CCGC 1 cut(s) 222
BspANI GGCC 3 cut(s) 108, 118, 500
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 118, 189, 443
BspMAI CTGCAG 1 cut(s) 372
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 2 cut(s) 12, 152
BspT107I GGYRCC 1 cut(s) 441
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 2 cut(s) 237, 422
BssMI GATC 2 cut(s) 4, 144
BssNI GRCGYC 1 cut(s) 89
BssSI CACGAG 1 cut(s) 298
Bst2BI CACGAG 1 cut(s) 298
Bst4CI ACNGT 2 cut(s) 129, 172
BstACI GRCGYC 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 72
BstC8I GCNNGC 4 cut(s) 407, 480, 494, 498
BstDEI CTNAG 2 cut(s) 8, 84
BstENI CCTNNNNNAGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 2 cut(s) 7, 147
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 2 cut(s) 4, 144
BstMWI GCNNNNNNNGC 6 cut(s) 72, 228, 231, 278, 317, 411
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 368
BstSLI GKGCMC 1 cut(s) 120
BstV1I GCAGC 5 cut(s) 237, 240, 243, 259, 494
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 198
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 3 cut(s) 108, 118, 500
BtsCI GGATG 1 cut(s) 403
BtsI GCAGTG 4 cut(s) 267, 306, 340, 365
BtsIMutI CAGTG 8 cut(s) 66, 81, 125, 267, 306, 340, 365, 429
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 4 cut(s) 407, 480, 494, 498
Cfr13I GGNCC 4 cut(s) 107, 116, 117, 188
CseI GACGC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 240, 442
CspCI CAANNNNNGTGG 4 cut(s) 121, 156, 310, 345
CviAII CATG 1 cut(s) 502
CviQI GTAC 2 cut(s) 240, 442
DdeI CTNAG 2 cut(s) 8, 84
DpnI GATC 2 cut(s) 6, 146
DpnII GATC 2 cut(s) 4, 144
EaeI YGGCCR 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 188
EcoNI CCTNNNNNAGG 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 1 cut(s) 505
FaiI YATR 5 cut(s) 32, 179, 217, 219, 503
FaqI GGGAC 1 cut(s) 201
FatI CATG 1 cut(s) 501
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 6 cut(s) 223, 226, 229, 232, 273, 483
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 6 cut(s) 223, 226, 229, 232, 273, 483
GluI GCNGC 6 cut(s) 223, 226, 229, 232, 273, 483
GsaI CCCAGC 2 cut(s) 117, 257
HaeIII GGCC 3 cut(s) 108, 118, 500
HapII CCGG 1 cut(s) 110
HgaI GACGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 1 cut(s) 505
HinfI GANTC 1 cut(s) 362
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 238, 385
Hpy188I TCNGA 2 cut(s) 9, 149
Hpy188III TCNNGA 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 388
HpyCH4III ACNGT 2 cut(s) 129, 172
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 7 cut(s) 66, 75, 132, 183, 370, 409, 427
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 228, 231, 278, 317, 411
HpyF3I CTNAG 2 cut(s) 8, 84
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 1 cut(s) 505
KpnI GGTACC 1 cut(s) 445
Kzo9I GATC 2 cut(s) 4, 144
LmnI GCTCC 1 cut(s) 475
Lsp1109I GCAGC 5 cut(s) 237, 240, 243, 259, 494
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 123, 363
MalI GATC 2 cut(s) 6, 146
MboI GATC 2 cut(s) 4, 144
MboII GAAGA 6 cut(s) 24, 52, 61, 169, 214, 442
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 120, 305
MlsI TGGCCA 1 cut(s) 500
MluCI AATT 3 cut(s) 21, 162, 324
MluNI TGGCCA 1 cut(s) 500
MlyI GAGTC 1 cut(s) 371
MnlI CCTC 7 cut(s) 93, 189, 432, 444, 447, 450, 463
Mox20I TGGCCA 1 cut(s) 500
MscI TGGCCA 1 cut(s) 500
MseI TTAA 1 cut(s) 526
Msp20I TGGCCA 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 110
MwoI GCNNNNNNNGC 6 cut(s) 72, 228, 231, 278, 317, 411
NciI CCSGG 1 cut(s) 110
NdeI CATATG 1 cut(s) 217
NdeII GATC 2 cut(s) 4, 144
NlaIII CATG 1 cut(s) 505
NlaIV GGNNCC 3 cut(s) 118, 189, 443
NmuCI GTSAC 2 cut(s) 123, 363
PaqCI CACCTGC 1 cut(s) 361
PkrI GCNGC 6 cut(s) 224, 227, 230, 233, 274, 484
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PspFI CCCAGC 2 cut(s) 113, 253
PspN4I GGNNCC 3 cut(s) 118, 189, 443
PspOMI GGGCCC 1 cut(s) 116
PspPI GGNCC 4 cut(s) 107, 116, 117, 188
PstI CTGCAG 1 cut(s) 372
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 2 cut(s) 241, 443
RsaNI GTAC 2 cut(s) 240, 442
SaqAI TTAA 1 cut(s) 526
SatI GCNGC 6 cut(s) 223, 226, 229, 232, 273, 483
Sau3AI GATC 2 cut(s) 4, 144
Sau96I GGNCC 4 cut(s) 107, 116, 117, 188
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 2 cut(s) 120, 305
SetI ASST 7 cut(s) 21, 39, 200, 375, 443, 474, 487
SfcI CTRYAG 1 cut(s) 368
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 3 cut(s) 21, 162, 324
SsiI CCGC 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 129, 172
TaiI ACGT 1 cut(s) 39
TasI AATT 3 cut(s) 21, 162, 324
TatI WGTACW 1 cut(s) 239
TauI GCSGC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 526
Tru9I TTAA 1 cut(s) 526
TscAI CASTG 8 cut(s) 73, 88, 132, 274, 313, 340, 372, 429
TseFI GTSAC 2 cut(s) 123, 363
TseI GCWGC 5 cut(s) 225, 228, 231, 272, 482
Tsp45I GTSAC 2 cut(s) 123, 363
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 8 cut(s) 73, 88, 132, 274, 313, 340, 372, 429
VpaK11BI GGWCC 1 cut(s) 188
XagI CCTNNNNNAGG 1 cut(s) 97
XapI RAATTY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.