Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005462

Physical Location & Seq

Genomic Coordinates Forward (+)

9823513 .. 9827243

Gene Structure 3731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTTGTGGGTCGACAAGTACAGGCCGAAATCACTCGACAAGGTCATAGTTCATGAAGATATCGCCCAAAAACTCAAGAAATTGGTTTCCGAGCAAGATTGTCCACATTTGCTCTTTTATGGGCCGTCAGGTTCTGGTAAGAAAACCCTAATTATGGCTCTTCTCAAGCAGATATATGGGGCCAGTGCAGAGAAGGTGAAAGTGGAGAACAGGGCATGGAAAGTTGATGCTGGGAGTAGAACTATTGATCTGGAGCTCACTACATTATCAAGCACCAATCATGTGGAACTTACTCCAAGTGATGCAGGCTTTCAGGACAGATATATTGTTCAGGAGATAATTAAAGAAATGGCCAAGAACAGACCAATTGACACGAAAGGAAAGAAGGGATATAAGGTGTTGGTATTAAATGAGGTTGACAAGCTCTCACGAGAAGCTCAACATTCTCTGCGGAGAACAATGGAGAAATACAGCTCATCTTGCCGTCTCATCTTATGCTGCAACAGCTCTTCGAAGGTTACCGAAGCCATTAAGTCTCGTTGTCTCAATGTGCGCATAAATGCACCTTCGCAGGAAGAGATAGTGAAAGTGTTGGAGTTCGTTGCAAAGAAAGAAAGTCTGCAACTGCCCCAGGGTTTTGCTGCTCGTATTGCTGAAAAATCAAATCGCAGTCTAAGAAGAGCTATTTTGTCACTTGAAACTTGTCGTGTCCAAAACTATCCGTTCACAGGTAACCAAGTGATATCTCCCATGGATTGGGAAGAGTATGTTGCTGAAATAGCAACTGACATGATGAAAGAACAAAGCCCTAAAAAGTTATTTCAGGTGCGTGGAAAGGTGTACGAATTACTAGTTAATTGTATTCCACCAGAAGTCATTCTAAAGAGACTCCTTCATGAATTGCTGAAGAAACTGGACTCAGAGCTAAAGCTTGAAGTCTGCCACTGGGCTGCATATTATGAACATCGGATGCGATTAGGTCAGAAAGCCATATTTCACATAGAAGCATTTGTGGCCAAGTTTATGAGCATATACAAAAACTTCCTCATTTCAACGTTTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

DNA_pol3_delta2

Protein Analysis

354

Amino Acids

40.6

Weight (kDa)

9.32

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad17	PF03215	2 - 59	3e-06	Rad17 P-loop domain
DNA_pol3_delta2	PF13177	18 - 188	2.6e-12	DNA polymerase III, delta subunit
AAA	PF00004	37 - 182	2.5e-07	ATPase family associated with various cellular activities (AAA)
RCF1-5-like_lid	PF21960	196 - 236	3.9e-11	RCF1/5-like, AAA+ ATPase lid domain
RFC_C	PF22534	253 - 342	1.5e-30	Replication factor C subunit 3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27740
fragaria_vesca	FvH4_1g23560 FvH4_2g04970 FvH4_2g04970 FvH4_2g04970
malus_domestica	MD04G1041000.v1.1 MD04G1041300.v1.1 MD12G1011300.v1.1
prunus_persica	Prupe.1G194700_v2.0.a1 Prupe.1G194700_v2.0.a1 Prupe.4G268900_v2.0.a1 Prupe.4G268900_v2.0.a1 Prupe.7G013300_v2.0.a1 Prupe.7G013300_v2.0.a1 Prupe.7G013300_v2.0.a1
pyrus_communis	pycom12g00880
rosa_chinensis	RchiOBHm_Chr3g0496081
rosa_laevigata	RLG00000022564
rosa_multiflora	Rmu_sc0002392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00389580
rosa_rugosa	Rorug03G0279300 Rorug03G0279400 Rorug03G0279400 Rorug03G0279400 Rorug03G0279500
rosa_samantha	Rh3AG326500 Rh3BG362800 Rh3DG362200
rosa_wichuraiana	Rw3G028590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	554
AccB7I	CCANNNNNTGG	1 cut(s)	756
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	1 cut(s)	451
AclI	AACGTT	1 cut(s)	1055
AcoI	YGGCCR	2 cut(s)	351, 1014
AcuI	CTGAAG	1 cut(s)	926
AfaI	GTAC	2 cut(s)	20, 842
AfiI	CCNNNNNNNGG	3 cut(s)	154, 728, 756
AgsI	TTSAA	3 cut(s)	698, 935, 1053
AhlI	ACTAGT	1 cut(s)	850
AjnI	CCWGG	1 cut(s)	630
AluBI	AGCT	8 cut(s)	256, 424, 437, 474, 507, 683, 925, 931
AluI	AGCT	8 cut(s)	256, 424, 437, 474, 507, 683, 925, 931
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	4 cut(s)	491, 540, 548, 880
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	5 cut(s)	23, 122, 180, 351, 1014
ApeKI	GCWGC	3 cut(s)	498, 641, 950
Asp700I	GAANNNNTTC	1 cut(s)	876
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	2 cut(s)	122, 180
AsuHPI	GGTGA	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	512
BalI	TGGCCA	2 cut(s)	353, 1016
BanII	GRGCYC	1 cut(s)	258
BauI	CACGAG	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	485, 628, 937
BceAI	ACGGC	2 cut(s)	109, 468
BciT130I	CCWGG	1 cut(s)	632
BcoDI	GTCTC	4 cut(s)	491, 540, 548, 880
BcuI	ACTAGT	1 cut(s)	850
BfaI	CTAG	1 cut(s)	851
BisI	GCNGC	3 cut(s)	499, 642, 951
BlsI	GCNGC	3 cut(s)	500, 643, 952
Bme1390I	CCNGG	1 cut(s)	632
BmgT120I	GGNCC	2 cut(s)	122, 180
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	632
BmrI	ACTGGG	1 cut(s)	955
BmsI	GCATC	3 cut(s)	217, 292, 960
BmuI	ACTGGG	1 cut(s)	955
BpmI	CTGGAG	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	512
BpuEI	CTTGAG	2 cut(s)	59, 149
BsaJI	CCNNGG	3 cut(s)	630, 631, 750
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 728, 756
Bse1I	ACTGG	3 cut(s)	183, 918, 950
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	3 cut(s)	630, 631, 750
BseGI	GGATG	1 cut(s)	975
BseLI	CCNNNNNNNGG	3 cut(s)	154, 728, 756
BseMII	CTCAG	1 cut(s)	933
BseNI	ACTGG	3 cut(s)	183, 918, 950
BseXI	GCAGC	3 cut(s)	485, 628, 937
BseYI	CCCAGC	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	5 cut(s)	25, 124, 182, 353, 1016
BsiHKAI	GWGCWC	1 cut(s)	258
BslI	CCNNNNNNNGG	3 cut(s)	154, 728, 756
BsmAI	GTCTC	4 cut(s)	491, 540, 548, 880
BsmBI	CGTCTC	1 cut(s)	491
BsnI	GGCC	5 cut(s)	25, 124, 182, 353, 1016
Bsp119I	TTCGAA	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	247
Bsp19I	CCATGG	1 cut(s)	750
BspACI	CCGC	1 cut(s)	451
BspANI	GGCC	5 cut(s)	25, 124, 182, 353, 1016
BspCNI	CTCAG	1 cut(s)	932
BspHI	TCATGA	2 cut(s)	52, 895
BspLI	GGNNCC	1 cut(s)	181
BspQI	GCTCTTC	3 cut(s)	165, 514, 673
BspT104I	TTCGAA	1 cut(s)	512
BsrI	ACTGG	3 cut(s)	183, 918, 950
BssECI	CCNNGG	3 cut(s)	630, 631, 750
BssMI	GATC	1 cut(s)	247
BssSI	CACGAG	1 cut(s)	429
BssT1I	CCWWGG	1 cut(s)	750
Bst2BI	CACGAG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	632
Bst6I	CTCTTC	5 cut(s)	165, 514, 570, 673, 756
BstBI	TTCGAA	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	674, 919
BstDSI	CCRYGG	1 cut(s)	750
BstEII	GGTNACC	2 cut(s)	517, 731
BstF5I	GGATG	1 cut(s)	975
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	4 cut(s)	491, 540, 548, 880
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	5 cut(s)	480, 504, 650, 779, 1013
BstNI	CCWGG	1 cut(s)	632
BstPI	GGTNACC	2 cut(s)	517, 731
BstSCI	CCNGG	1 cut(s)	630
BstV1I	GCAGC	3 cut(s)	485, 628, 937
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuRI	GGCC	5 cut(s)	25, 124, 182, 353, 1016
BtgI	CCRYGG	1 cut(s)	750
BtsCI	GGATG	1 cut(s)	975
BtsIMutI	CAGTG	2 cut(s)	190, 943
Cac8I	GCNNGC	1 cut(s)	307
CaiI	CAGNNNCTG	1 cut(s)	134
CciI	TCATGA	2 cut(s)	52, 895
CfoI	GCGC	1 cut(s)	555
Cfr13I	GGNCC	2 cut(s)	122, 180
Csp6I	GTAC	2 cut(s)	19, 841
CviAII	CATG	6 cut(s)	53, 216, 281, 751, 790, 896
CviQI	GTAC	2 cut(s)	19, 841
DdeI	CTNAG	2 cut(s)	674, 919
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
EaeI	YGGCCR	2 cut(s)	351, 1014
Eam1104I	CTCTTC	5 cut(s)	165, 514, 570, 673, 756
EarI	CTCTTC	5 cut(s)	165, 514, 570, 673, 756
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	750
Eco24I	GRGCYC	1 cut(s)	258
Eco32I	GATATC	2 cut(s)	61, 744
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	926
Eco91I	GGTNACC	2 cut(s)	517, 731
EcoICRI	GAGCTC	1 cut(s)	256
EcoO65I	GGTNACC	2 cut(s)	517, 731
EcoRII	CCWGG	1 cut(s)	630
EcoRV	GATATC	2 cut(s)	61, 744
EcoT14I	CCWWGG	1 cut(s)	750
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	750
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	6 cut(s)	56, 219, 284, 754, 793, 899
FatI	CATG	6 cut(s)	52, 215, 280, 750, 789, 895
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	3 cut(s)	499, 642, 951
FokI	GGATG	1 cut(s)	982
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	3 cut(s)	499, 642, 951
FspAI	RTGCGCAY	1 cut(s)	554
FspBI	CTAG	1 cut(s)	851
FspI	TGCGCA	1 cut(s)	554
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	3 cut(s)	499, 642, 951
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	5 cut(s)	25, 124, 182, 353, 1016
HhaI	GCGC	1 cut(s)	555
Hin1II	CATG	6 cut(s)	56, 219, 284, 754, 793, 899
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HincII	GTYRAC	2 cut(s)	13, 418
HindII	GTYRAC	2 cut(s)	13, 418
HindIII	AAGCTT	1 cut(s)	929
HinfI	GANTC	2 cut(s)	888, 917
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	5 cut(s)	13, 104, 418, 726, 841
Hpy188I	TCNGA	4 cut(s)	91, 922, 969, 984
Hpy188III	TCNNGA	7 cut(s)	53, 76, 251, 314, 332, 429, 896
Hpy8I	GTNNAC	5 cut(s)	13, 104, 418, 726, 841
HpyAV	CCTTC	5 cut(s)	187, 379, 508, 576, 902
HpyCH4IV	ACGT	1 cut(s)	1055
HpyCH4V	TGCA	7 cut(s)	188, 305, 501, 563, 605, 622, 953
HpyF10VI	GCNNNNNNNGC	5 cut(s)	480, 504, 650, 779, 1013
HpyF3I	CTNAG	2 cut(s)	674, 919
HpySE526I	ACGT	1 cut(s)	1055
Hsp92II	CATG	6 cut(s)	56, 219, 284, 754, 793, 899
HspAI	GCGC	1 cut(s)	553
Kzo9I	GATC	1 cut(s)	247
LguI	GCTCTTC	3 cut(s)	165, 514, 673
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	3 cut(s)	485, 628, 937
LweI	GCATC	3 cut(s)	217, 292, 960
MaeI	CTAG	1 cut(s)	851
MaeII	ACGT	1 cut(s)	1055
MaeIII	GTNAC	3 cut(s)	517, 690, 731
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	7 cut(s)	68, 152, 501, 587, 690, 773, 919
MfeI	CAATTG	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	2 cut(s)	353, 1016
MluCI	AATT	7 cut(s)	80, 150, 339, 366, 845, 856, 899
MluNI	TGGCCA	2 cut(s)	353, 1016
MlyI	GAGTC	2 cut(s)	882, 911
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	2 cut(s)	406, 1055
Mox20I	TGGCCA	2 cut(s)	353, 1016
MroXI	GAANNNNTTC	1 cut(s)	876
MscI	TGGCCA	2 cut(s)	353, 1016
MseI	TTAA	4 cut(s)	342, 407, 531, 855
Msp20I	TGGCCA	2 cut(s)	353, 1016
MspR9I	CCNGG	1 cut(s)	632
MunI	CAATTG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	632
MwoI	GCNNNNNNNGC	5 cut(s)	480, 504, 650, 779, 1013
NcoI	CCATGG	1 cut(s)	750
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	6 cut(s)	56, 219, 284, 754, 793, 899
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	690
NsbI	TGCGCA	1 cut(s)	554
NspV	TTCGAA	1 cut(s)	512
PagI	TCATGA	2 cut(s)	52, 895
PasI	CCCWGGG	1 cut(s)	631
PciSI	GCTCTTC	3 cut(s)	165, 514, 673
PdmI	GAANNNNTTC	1 cut(s)	876
PflFI	GACNNNGTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	756
PkrI	GCNGC	3 cut(s)	500, 643, 952
PleI	GAGTC	2 cut(s)	882, 911
PpsI	GAGTC	2 cut(s)	882, 911
Psp124BI	GAGCTC	1 cut(s)	258
Psp1406I	AACGTT	1 cut(s)	1055
Psp6I	CCWGG	1 cut(s)	630
PspEI	GGTNACC	2 cut(s)	517, 731
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	122, 180
PstNI	CAGNNNCTG	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	2 cut(s)	20, 842
RsaNI	GTAC	2 cut(s)	19, 841
SacI	GAGCTC	1 cut(s)	258
SalI	GTCGAC	1 cut(s)	11
SapI	GCTCTTC	3 cut(s)	165, 514, 673
SaqAI	TTAA	4 cut(s)	342, 407, 531, 855
SatI	GCNGC	3 cut(s)	499, 642, 951
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	2 cut(s)	122, 180
SchI	GAGTC	2 cut(s)	882, 911
ScrFI	CCNGG	1 cut(s)	632
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	3 cut(s)	217, 292, 960
SfuI	TTCGAA	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	74, 164
SmoI	CTYRAG	2 cut(s)	74, 164
SpeI	ACTAGT	1 cut(s)	850
Sse9I	AATT	7 cut(s)	80, 150, 339, 366, 845, 856, 899
SsiI	CCGC	1 cut(s)	451
SspMI	CTAG	1 cut(s)	851
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	630
StyI	CCWWGG	1 cut(s)	750
TaiI	ACGT	1 cut(s)	1058
TaqI	TCGA	3 cut(s)	12, 36, 512
TasI	AATT	7 cut(s)	80, 150, 339, 366, 845, 856, 899
TatI	WGTACW	1 cut(s)	18
Tru1I	TTAA	4 cut(s)	342, 407, 531, 855
Tru9I	TTAA	4 cut(s)	342, 407, 531, 855
TscAI	CASTG	2 cut(s)	190, 950
TseFI	GTSAC	1 cut(s)	690
TseI	GCWGC	3 cut(s)	498, 641, 950
Tsp45I	GTSAC	1 cut(s)	690
TspDTI	ATGAA	6 cut(s)	41, 69, 809, 884, 912, 975
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	2 cut(s)	190, 950
Tth111I	GACNNNGTC	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	756
XmiI	GTMKAC	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.