Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005462

Physical Location & Seq

Genomic Coordinates Reverse (-)

1887556 .. 1894563

Gene Structure 7008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G013300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGCTGTGGGTGGACAAGTACAGACCCAAAACCCTAGACCAGGCAATGGTCCACCAAGACATCGCACAAAACCTCAAGAAACTTGTCTCAGAGCAGGACTGCCCCCATTTGCTCTTTTATGGCCCTTCTGGTTCCGGCAAGAAAACCCTAATCATCGCCCTTCTTCGTCAGATTTTCGGACCCAGCGCCGATAAGGTGAAGGTGGAAAACAGGGCATGGAAAGTTGATGCTGGAAGTAGAACCATTGATATAGAGCTGACTACATTATCGAGCACCAACCATATTGAACTGAACCCCAGTGATGCAGGGTTTCAGGACAGATATATTGTTCAAGAGATAATTAAAGAAATGGCTAAAAATAGACCCATTGACACAAAAGGGAAAAAAGGATATAAAGTCTTAGTGCTGAATGAAGTTGACAAACTTTCAACAGAAGCGCAACATTCTCTTCGAAGAACTATGGAGAAATATAGTGCCTATTGCAGGCTAATACTATGCTGTAACAGCTCTTCAAAGGTTACTGAAGCAATCCGGTCTCGTTGTCTTAATGTGCGAATAAATGCACCGACAGAAGAACGGATTATGAAAGTATTGGAGTTCATTGGAAAGAAAGAAGGGCTGCAGCTTCCTTCTGGATTTGCTGCTCGTATAGCTGAAAAATCAAATAGGAGCTTAAGGAGAGCTATATTGTCATTAGAAACTTGCCATGTTCAACAGTATCCCTTTACAAGTAACCAGGCAATACCCCCAATGGATTGGGAGGAATATGTTTCTGAAATTGCATCTGATGTAATGAAGGAGCAGAGCCCAAAAAGGCTTTATCAGGTGCGGCAAAAGTTGTATGAGCTACTTCTTAATTGTATTCCTCCAGAGATCATCTTGAAGAGGCTTCTTTATGAGTTATTGAAGAAGTTGGATGCAGAGTTGAAGCACGAGGTCTGCCATTGGGCTGCATATTATGTAAGTATTTTGTTTATTTTGGACGAAAATGCATATTATGAACATAGGATGCGTCTTGGGCAGAAAGCTATATTTCACCTTGAAGCTTTCGTGGCCAAGTTCATGAGCATTTATAAGGGTTTCCTCATTTCAGCATTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

DNA_pol3_delta2

Protein Analysis

368

Amino Acids

42.28

Weight (kDa)

9.11

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27740
fragaria_vesca	FvH4_1g23560 FvH4_2g04970 FvH4_2g04970 FvH4_2g04970
malus_domestica	MD04G1041000.v1.1 MD04G1041300.v1.1 MD12G1011300.v1.1
prunus_persica	Prupe.1G194700_v2.0.a1 Prupe.1G194700_v2.0.a1 Prupe.4G268900_v2.0.a1 Prupe.4G268900_v2.0.a1 Prupe.7G013300_v2.0.a1 Prupe.7G013300_v2.0.a1 Prupe.7G013300_v2.0.a1
pyrus_communis	pycom12g00880
rosa_chinensis	RchiOBHm_Chr3g0496081
rosa_laevigata	RLG00000022564
rosa_multiflora	Rmu_sc0002392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00389580
rosa_rugosa	Rorug03G0279300 Rorug03G0279400 Rorug03G0279400 Rorug03G0279400 Rorug03G0279500
rosa_samantha	Rh3AG326500 Rh3BG362800 Rh3DG362200
rosa_wichuraiana	Rw3G028590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1074
AccB7I	CCANNNNNTGG	1 cut(s)	46
AciI	CCGC	1 cut(s)	829
AcoI	YGGCCR	1 cut(s)	1053
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	3 cut(s)	40, 46, 483
AflII	CTTAAG	1 cut(s)	673
AgsI	TTSAA	9 cut(s)	287, 332, 429, 513, 713, 883, 907, 928, 1043
AjnI	CCWGG	2 cut(s)	39, 735
AluBI	AGCT	9 cut(s)	256, 507, 625, 653, 672, 683, 847, 1028, 1046
AluI	AGCT	9 cut(s)	256, 507, 625, 653, 672, 683, 847, 1028, 1046
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	2 cut(s)	91, 540
AoxI	GGCC	2 cut(s)	121, 1053
ApeKI	GCWGC	4 cut(s)	619, 622, 641, 950
AspLEI	GCGC	2 cut(s)	188, 439
AspS9I	GGNCC	3 cut(s)	49, 122, 179
AsuHPI	GGTGA	2 cut(s)	208, 1028
AsuII	TTCGAA	1 cut(s)	451
AvaII	GGWCC	2 cut(s)	49, 179
BalI	TGGCCA	1 cut(s)	1055
BanII	GRGCYC	1 cut(s)	809
BarI	GAAGNNNNNNTAC	2 cut(s)	493, 525
BauI	CACGAG	1 cut(s)	932
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	4 cut(s)	606, 628, 634, 937
BciT130I	CCWGG	2 cut(s)	41, 737
BciVI	GTATCC	1 cut(s)	729
BcoDI	GTCTC	2 cut(s)	91, 540
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	620
BfoI	RGCGCY	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	673
BfuI	GTATCC	1 cut(s)	729
BisI	GCNGC	5 cut(s)	620, 623, 642, 830, 951
BlsI	GCNGC	5 cut(s)	621, 624, 643, 831, 952
Bme1390I	CCNGG	2 cut(s)	41, 737
Bme18I	GGWCC	2 cut(s)	49, 179
BmgT120I	GGNCC	3 cut(s)	49, 122, 179
BmiI	GGNNCC	2 cut(s)	133, 181
BmrFI	CCNGG	2 cut(s)	41, 737
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	5 cut(s)	217, 292, 791, 907, 999
BmuI	ACTGGG	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	852
Bpu14I	TTCGAA	1 cut(s)	451
BpuEI	CTTGAG	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	540
BsaWI	WCCGGW	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 46, 483
Bse1I	ACTGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	41, 737
BseGI	GGATG	2 cut(s)	922, 1014
BseLI	CCNNNNNNNGG	3 cut(s)	40, 46, 483
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	297
BseXI	GCAGC	4 cut(s)	606, 628, 634, 937
BseYI	CCCAGC	1 cut(s)	182
BshFI	GGCC	2 cut(s)	123, 1055
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	135, 532
BslI	CCNNNNNNNGG	3 cut(s)	40, 46, 483
BsmAI	GTCTC	2 cut(s)	91, 540
BsnI	GGCC	2 cut(s)	123, 1055
Bso31I	GGTCTC	1 cut(s)	540
Bsp119I	TTCGAA	1 cut(s)	451
Bsp1286I	GDGCHC	2 cut(s)	275, 809
Bsp143I	GATC	1 cut(s)	873
BspACI	CCGC	1 cut(s)	829
BspANI	GGCC	2 cut(s)	123, 1055
BspCNI	CTCAG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	1062
BspLI	GGNNCC	2 cut(s)	133, 181
BspMAI	CTGCAG	1 cut(s)	624
BspQI	GCTCTTC	1 cut(s)	514
BspT104I	TTCGAA	1 cut(s)	451
BspTI	CTTAAG	1 cut(s)	673
BspTNI	GGTCTC	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	873
BssSI	CACGAG	1 cut(s)	932
Bst2BI	CACGAG	1 cut(s)	932
Bst2UI	CCWGG	2 cut(s)	41, 737
Bst4CI	ACNGT	1 cut(s)	717
Bst6I	CTCTTC	3 cut(s)	453, 514, 878
BstAFI	CTTAAG	1 cut(s)	673
BstBI	TTCGAA	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	2 cut(s)	88, 400
BstENI	CCTNNNNNAGG	2 cut(s)	38, 481
BstF5I	GGATG	2 cut(s)	922, 1014
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	188, 439
BstKTI	GATC	1 cut(s)	876
BstMAI	GTCTC	2 cut(s)	91, 540
BstMBI	GATC	1 cut(s)	873
BstMWI	GCNNNNNNNGC	4 cut(s)	504, 650, 1018, 1052
BstNI	CCWGG	2 cut(s)	41, 737
BstSCI	CCNGG	2 cut(s)	39, 735
BstSFI	CTRYAG	1 cut(s)	620
BstV1I	GCAGC	4 cut(s)	606, 628, 634, 937
BstXI	CCANNNNNNTGG	1 cut(s)	756
BsuI	GTATCC	1 cut(s)	729
BsuRI	GGCC	2 cut(s)	123, 1055
BtgZI	GCGATG	2 cut(s)	46, 139
BtsCI	GGATG	2 cut(s)	922, 1014
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	485
CciI	TCATGA	1 cut(s)	1062
CfoI	GCGC	2 cut(s)	188, 439
Cfr13I	GGNCC	3 cut(s)	49, 122, 179
CseI	GACGC	1 cut(s)	1001
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	3 cut(s)	216, 707, 1063
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	88, 400
DpnI	GATC	1 cut(s)	875
DpnII	GATC	1 cut(s)	873
EaeI	YGGCCR	1 cut(s)	1053
Eam1104I	CTCTTC	3 cut(s)	453, 514, 878
EarI	CTCTTC	3 cut(s)	453, 514, 878
Eco24I	GRGCYC	1 cut(s)	809
Eco31I	GGTCTC	1 cut(s)	540
Eco47I	GGWCC	2 cut(s)	49, 179
Eco57I	CTGAAG	1 cut(s)	543
EcoNI	CCTNNNNNAGG	2 cut(s)	38, 481
EcoRII	CCWGG	2 cut(s)	39, 735
EcoT22I	ATGCAT	1 cut(s)	994
EcoT38I	GRGCYC	1 cut(s)	809
FaeI	CATG	3 cut(s)	219, 710, 1066
FatI	CATG	3 cut(s)	215, 706, 1062
Fnu4HI	GCNGC	5 cut(s)	620, 623, 642, 830, 951
FokI	GGATG	2 cut(s)	929, 1021
FriOI	GRGCYC	1 cut(s)	809
Fsp4HI	GCNGC	5 cut(s)	620, 623, 642, 830, 951
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	2 cut(s)	187, 438
GluI	GCNGC	5 cut(s)	620, 623, 642, 830, 951
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	852
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	123, 1055
HapII	CCGG	2 cut(s)	135, 532
HgaI	GACGC	1 cut(s)	1001
HhaI	GCGC	2 cut(s)	188, 439
Hin1II	CATG	3 cut(s)	219, 710, 1066
Hin6I	GCGC	2 cut(s)	186, 437
HinP1I	GCGC	2 cut(s)	186, 437
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	1044
HpaII	CCGG	2 cut(s)	135, 532
HphI	GGTGA	2 cut(s)	208, 1028
Hpy166II	GTNNAC	3 cut(s)	13, 52, 418
Hpy188I	TCNGA	5 cut(s)	91, 171, 179, 775, 787
Hpy188III	TCNNGA	7 cut(s)	76, 314, 332, 633, 869, 880, 1063
Hpy8I	GTNNAC	3 cut(s)	13, 52, 418
HpyAV	CCTTC	6 cut(s)	135, 170, 193, 608, 639, 790
HpyCH4III	ACNGT	1 cut(s)	717
HpyCH4V	TGCA	8 cut(s)	305, 483, 563, 622, 782, 920, 953, 992
HpyF10VI	GCNNNNNNNGC	4 cut(s)	504, 650, 1018, 1052
HpyF3I	CTNAG	2 cut(s)	88, 400
Hsp92II	CATG	3 cut(s)	219, 710, 1066
HspAI	GCGC	2 cut(s)	186, 437
Kzo9I	GATC	1 cut(s)	873
LguI	GCTCTTC	1 cut(s)	514
LmnI	GCTCC	2 cut(s)	669, 799
Lsp1109I	GCAGC	4 cut(s)	606, 628, 634, 937
LweI	GCATC	5 cut(s)	217, 292, 791, 907, 999
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	3 cut(s)	500, 517, 731
MalI	GATC	1 cut(s)	875
MboI	GATC	1 cut(s)	873
MboII	GAAGA	7 cut(s)	155, 440, 465, 501, 584, 895, 919
MhlI	GDGCHC	2 cut(s)	275, 809
MlsI	TGGCCA	1 cut(s)	1055
MluCI	AATT	3 cut(s)	339, 777, 856
MluNI	TGGCCA	1 cut(s)	1055
MmeI	TCCRAC	1 cut(s)	894
MnlI	CCTC	6 cut(s)	83, 754, 876, 879, 928, 1094
Mox20I	TGGCCA	1 cut(s)	1055
Mph1103I	ATGCAT	1 cut(s)	994
MscI	TGGCCA	1 cut(s)	1055
MseI	TTAA	4 cut(s)	342, 546, 674, 855
Msp20I	TGGCCA	1 cut(s)	1055
MspCI	CTTAAG	1 cut(s)	673
MspI	CCGG	2 cut(s)	135, 532
MspR9I	CCNGG	2 cut(s)	41, 737
MvaI	CCWGG	2 cut(s)	41, 737
MwoI	GCNNNNNNNGC	4 cut(s)	504, 650, 1018, 1052
NdeII	GATC	1 cut(s)	873
NlaIII	CATG	3 cut(s)	219, 710, 1066
NlaIV	GGNNCC	2 cut(s)	133, 181
NsiI	ATGCAT	1 cut(s)	994
NspV	TTCGAA	1 cut(s)	451
PagI	TCATGA	1 cut(s)	1062
PciSI	GCTCTTC	1 cut(s)	514
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	5 cut(s)	621, 624, 643, 831, 952
PsiI	TTATAA	1 cut(s)	1074
Psp6I	CCWGG	2 cut(s)	39, 735
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	2 cut(s)	39, 735
PspN4I	GGNNCC	2 cut(s)	133, 181
PspPI	GGNCC	3 cut(s)	49, 122, 179
PstI	CTGCAG	1 cut(s)	624
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	514
SaqAI	TTAA	4 cut(s)	342, 546, 674, 855
SatI	GCNGC	5 cut(s)	620, 623, 642, 830, 951
Sau3AI	GATC	1 cut(s)	873
Sau96I	GGNCC	3 cut(s)	49, 122, 179
ScrFI	CCNGG	2 cut(s)	41, 737
SduI	GDGCHC	2 cut(s)	275, 809
SfaNI	GCATC	5 cut(s)	217, 292, 791, 907, 999
SfcI	CTRYAG	1 cut(s)	620
SfuI	TTCGAA	1 cut(s)	451
SinI	GGWCC	2 cut(s)	49, 179
SmlI	CTYRAG	2 cut(s)	74, 673
SmoI	CTYRAG	2 cut(s)	74, 673
Sse9I	AATT	3 cut(s)	339, 777, 856
SsiI	CCGC	1 cut(s)	829
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	39, 735
TaaI	ACNGT	1 cut(s)	717
TaqI	TCGA	2 cut(s)	269, 451
TasI	AATT	3 cut(s)	339, 777, 856
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	1 cut(s)	832
Tru1I	TTAA	4 cut(s)	342, 546, 674, 855
Tru9I	TTAA	4 cut(s)	342, 546, 674, 855
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	4 cut(s)	619, 622, 641, 950
TspDTI	ATGAA	6 cut(s)	426, 589, 599, 809, 1014, 1051
TspGWI	ACGGA	1 cut(s)	592
TspRI	CASTG	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	46
Vha464I	CTTAAG	1 cut(s)	673
VpaK11BI	GGWCC	2 cut(s)	49, 179
XagI	CCTNNNNNAGG	2 cut(s)	38, 481
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.