Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005462

Physical Location & Seq

Genomic Coordinates Forward (+)

18415939 .. 18424314

Gene Structure 8376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G194700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCTGTGGGTGGACAAGTACAGACCCAAAACCCTAGACCAGGCGATGGTCCACCAAGACATCGCTCAAAACCTCAAGAAACTCGTTGCAGAGCAGGATTGCCCCCATTTGCTCTTTTACGGCCCTTCTGGCTCTGGCAAGAAAACCCTAATCATCGCCCTTCTTCGACAGATTTTCGGTCCCAGCGCCGATAAGGTGAAGGTGGAAAATAGGACATGGAAAGTTGATGCTGGAAGTAGAACCATTGATATAGAGCTGACTACATTATCAAGCACAAACCATATTGAACTGAACCCCAGTGATGCAGGTTTTCAGGACAGATATATTGTTCAAGAGATAATTAAAGAAATGGCTAAAAATAGACCCATTGACACAAAAGGGAAAAAGGGATATAAAATCTTAGTGCTGAATGAAGTCGACAAACTTTCTAGAGAAGCTCAGCATTCTCTTCGAAGAACTATGGAGAAGTATAGTGCTTATTGCCGGCTAATACTATGCTGTAACAGTTCTTCAAAGGTTACTGAAGCAATCCGGTCCCGGTGTCTAAATGTGCGAATAAATGCGCCAACAGAAGAGCAGATTGTTAAGGTATTGGAGTTCATTGGAAAGAAGGAAGGGCTGCAACTTCCTTCTGGATTTCCTGCTCGTATAGCGGAAAAATCAAATAGGAGCTTAAGGAGAGCTATATTGTCATTCGAAACTTGTCATGTTCAACAGTATCCCTTTACAAGTAATCAAGCAATACCCCCAATGGACTGGGAGGAATATGTTTCTGAAATTGCATCTGATATAATGAAGGAGCAGAGCCCAAAAAGGCTTTACCAGGTGCGGCAAAAGTTGTATGAGCTACTTCTTAATTGTATTCCTCCAGAGATCATCTTGAAGAGGCTGCTTTTTGAATTATTGAAGAAATTGGATGCTGAGTTGAAGCATGAGGTCTGCCATTGGGCTGCATACTACGAACACAGGATGCGTCTTGGGCAGAAAGCCATATTTCACCTCGAAGCGTTCGTGGCCAAGTTCATGAGCATCTATAAGGCTTTCCTCATTGCAGCTTTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

DNA_pol3_delta2

Protein Analysis

355

Amino Acids

40.82

Weight (kDa)

9.25

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27740
fragaria_vesca	FvH4_1g23560 FvH4_2g04970 FvH4_2g04970 FvH4_2g04970
malus_domestica	MD04G1041000.v1.1 MD04G1041300.v1.1 MD12G1011300.v1.1
prunus_persica	Prupe.1G194700_v2.0.a1 Prupe.1G194700_v2.0.a1 Prupe.4G268900_v2.0.a1 Prupe.4G268900_v2.0.a1 Prupe.7G013300_v2.0.a1 Prupe.7G013300_v2.0.a1 Prupe.7G013300_v2.0.a1
pyrus_communis	pycom12g00880
rosa_chinensis	RchiOBHm_Chr3g0496081
rosa_laevigata	RLG00000022564
rosa_multiflora	Rmu_sc0002392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00389580
rosa_rugosa	Rorug03G0279300 Rorug03G0279400 Rorug03G0279400 Rorug03G0279400 Rorug03G0279500
rosa_samantha	Rh3AG326500 Rh3BG362800 Rh3DG362200
rosa_wichuraiana	Rw3G028590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	296
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	2 cut(s)	653, 829
AcoI	YGGCCR	1 cut(s)	1014
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	40, 46
AflII	CTTAAG	1 cut(s)	673
AgsI	TTSAA	8 cut(s)	287, 332, 513, 713, 883, 899, 907, 928
AjnI	CCWGG	2 cut(s)	39, 822
AluBI	AGCT	6 cut(s)	256, 437, 672, 683, 847, 1055
AluI	AGCT	6 cut(s)	256, 437, 672, 683, 847, 1055
AoxI	GGCC	2 cut(s)	121, 1014
ApeKI	GCWGC	4 cut(s)	619, 889, 950, 1052
AspLEI	GCGC	2 cut(s)	188, 565
AspS9I	GGNCC	4 cut(s)	49, 122, 179, 534
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	2 cut(s)	208, 989
AsuII	TTCGAA	2 cut(s)	451, 696
AvaII	GGWCC	3 cut(s)	49, 179, 534
BalI	TGGCCA	1 cut(s)	1016
BanII	GRGCYC	1 cut(s)	809
BarI	GAAGNNNNNNTAC	2 cut(s)	493, 525
BbvI	GCAGC	3 cut(s)	606, 876, 937
BccI	CCATC	1 cut(s)	40
BceAI	ACGGC	1 cut(s)	136
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	2 cut(s)	41, 824
BciVI	GTATCC	1 cut(s)	729
BcnI	CCSGG	1 cut(s)	538
BfaI	CTAG	2 cut(s)	35, 429
BfoI	RGCGCY	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	673
BfuAI	ACCTGC	1 cut(s)	296
BfuI	GTATCC	1 cut(s)	729
BglI	GCCNNNNNGGC	1 cut(s)	129
BisI	GCNGC	5 cut(s)	620, 830, 890, 951, 1053
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	5 cut(s)	621, 831, 891, 952, 1054
Bme1390I	CCNGG	3 cut(s)	41, 538, 824
Bme18I	GGWCC	3 cut(s)	49, 179, 534
BmgT120I	GGNCC	4 cut(s)	49, 122, 179, 534
BmiI	GGNNCC	2 cut(s)	181, 536
BmrFI	CCNGG	3 cut(s)	41, 538, 824
BmrI	ACTGGG	2 cut(s)	291, 766
BmsI	GCATC	6 cut(s)	217, 292, 791, 907, 960, 1038
BmuI	ACTGGG	2 cut(s)	291, 766
BpmI	CTGGAG	1 cut(s)	852
Bpu1102I	GCTNAGC	1 cut(s)	438
Bpu14I	TTCGAA	2 cut(s)	451, 696
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	538
BsaWI	WCCGGW	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 46
Bse118I	RCCGGY	1 cut(s)	483
Bse1I	ACTGG	2 cut(s)	297, 761
Bse3DI	GCAATG	1 cut(s)	1047
BseBI	CCWGG	2 cut(s)	41, 824
BseGI	GGATG	2 cut(s)	922, 975
BseLI	CCNNNNNNNGG	2 cut(s)	40, 46
BseMI	GCAATG	1 cut(s)	1047
BseMII	CTCAG	2 cut(s)	452, 912
BseNI	ACTGG	2 cut(s)	297, 761
BseXI	GCAGC	3 cut(s)	606, 876, 937
BseYI	CCCAGC	1 cut(s)	182
BshFI	GGCC	2 cut(s)	123, 1016
BsiSI	CCGG	3 cut(s)	484, 532, 538
BslFI	GGGAC	2 cut(s)	165, 520
BslI	CCNNNNNNNGG	2 cut(s)	40, 46
BsmFI	GGGAC	2 cut(s)	165, 520
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	2 cut(s)	123, 1016
Bsp119I	TTCGAA	2 cut(s)	451, 696
Bsp1286I	GDGCHC	1 cut(s)	809
Bsp143I	GATC	1 cut(s)	873
Bsp1720I	GCTNAGC	1 cut(s)	438
BspACI	CCGC	2 cut(s)	653, 829
BspANI	GGCC	2 cut(s)	123, 1016
BspCNI	CTCAG	2 cut(s)	451, 913
BspHI	TCATGA	1 cut(s)	1023
BspLI	GGNNCC	2 cut(s)	181, 536
BspMI	ACCTGC	1 cut(s)	296
BspQI	GCTCTTC	1 cut(s)	567
BspT104I	TTCGAA	2 cut(s)	451, 696
BspTI	CTTAAG	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	1047
BsrFI	RCCGGY	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	297, 761
BssAI	RCCGGY	1 cut(s)	483
BssMI	GATC	1 cut(s)	873
Bst2UI	CCWGG	2 cut(s)	41, 824
Bst4CI	ACNGT	2 cut(s)	506, 717
Bst6I	CTCTTC	3 cut(s)	453, 567, 878
BstAFI	CTTAAG	1 cut(s)	673
BstBI	TTCGAA	2 cut(s)	451, 696
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	3 cut(s)	400, 438, 921
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	922, 975
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	188, 565
BstKTI	GATC	1 cut(s)	876
BstMBI	GATC	1 cut(s)	873
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 650, 979, 1013
BstNI	CCWGG	2 cut(s)	41, 824
BstSCI	CCNGG	3 cut(s)	39, 536, 822
BstV1I	GCAGC	3 cut(s)	606, 876, 937
BstXI	CCANNNNNNTGG	1 cut(s)	756
BsuI	GTATCC	1 cut(s)	729
BsuRI	GGCC	2 cut(s)	123, 1016
BtgZI	GCGATG	3 cut(s)	46, 59, 139
BtsCI	GGATG	2 cut(s)	922, 975
BtsIMutI	CAGTG	1 cut(s)	304
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	485
CciI	TCATGA	1 cut(s)	1023
CfoI	GCGC	2 cut(s)	188, 565
Cfr10I	RCCGGY	1 cut(s)	483
Cfr13I	GGNCC	4 cut(s)	49, 122, 179, 534
CseI	GACGC	1 cut(s)	962
CsiI	ACCWGGT	1 cut(s)	822
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	4 cut(s)	216, 707, 932, 1024
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	3 cut(s)	400, 438, 921
DpnI	GATC	1 cut(s)	875
DpnII	GATC	1 cut(s)	873
EaeI	YGGCCR	1 cut(s)	1014
Eam1104I	CTCTTC	3 cut(s)	453, 567, 878
EarI	CTCTTC	3 cut(s)	453, 567, 878
Eco24I	GRGCYC	1 cut(s)	809
Eco47I	GGWCC	3 cut(s)	49, 179, 534
Eco57I	CTGAAG	1 cut(s)	543
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	39, 822
EcoT38I	GRGCYC	1 cut(s)	809
FaeI	CATG	4 cut(s)	219, 710, 935, 1027
FaqI	GGGAC	2 cut(s)	165, 520
FatI	CATG	4 cut(s)	215, 706, 931, 1023
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	5 cut(s)	620, 830, 890, 951, 1053
FokI	GGATG	2 cut(s)	929, 982
FriOI	GRGCYC	1 cut(s)	809
Fsp4HI	GCNGC	5 cut(s)	620, 830, 890, 951, 1053
FspBI	CTAG	2 cut(s)	35, 429
GlaI	GCGC	2 cut(s)	187, 564
GluI	GCNGC	5 cut(s)	620, 830, 890, 951, 1053
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	852
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	123, 1016
HapII	CCGG	3 cut(s)	484, 532, 538
HgaI	GACGC	1 cut(s)	962
HhaI	GCGC	2 cut(s)	188, 565
Hin1II	CATG	4 cut(s)	219, 710, 935, 1027
Hin6I	GCGC	2 cut(s)	186, 563
HinP1I	GCGC	2 cut(s)	186, 563
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HpaII	CCGG	3 cut(s)	484, 532, 538
HphI	GGTGA	2 cut(s)	208, 989
Hpy166II	GTNNAC	3 cut(s)	13, 52, 418
Hpy188I	TCNGA	2 cut(s)	775, 787
Hpy188III	TCNNGA	8 cut(s)	76, 314, 332, 429, 633, 869, 880, 1024
Hpy8I	GTNNAC	3 cut(s)	13, 52, 418
HpyAV	CCTTC	7 cut(s)	135, 170, 193, 604, 608, 639, 790
HpyCH4III	ACNGT	2 cut(s)	506, 717
HpyCH4V	TGCA	6 cut(s)	89, 305, 622, 782, 953, 1052
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 650, 979, 1013
HpyF3I	CTNAG	3 cut(s)	400, 438, 921
Hsp92II	CATG	4 cut(s)	219, 710, 935, 1027
HspAI	GCGC	2 cut(s)	186, 563
KroI	GCCGGC	1 cut(s)	483
KroNI	GCCGGC	1 cut(s)	485
Kzo9I	GATC	1 cut(s)	873
LguI	GCTCTTC	1 cut(s)	567
LmnI	GCTCC	2 cut(s)	669, 799
Lsp1109I	GCAGC	3 cut(s)	606, 876, 937
LweI	GCATC	6 cut(s)	217, 292, 791, 907, 960, 1038
MabI	ACCWGGT	1 cut(s)	822
MaeI	CTAG	2 cut(s)	35, 429
MaeIII	GTNAC	2 cut(s)	500, 517
MalI	GATC	1 cut(s)	875
MboI	GATC	1 cut(s)	873
MboII	GAAGA	7 cut(s)	155, 440, 465, 501, 584, 895, 919
MhlI	GDGCHC	1 cut(s)	809
MlsI	TGGCCA	1 cut(s)	1016
MluCI	AATT	5 cut(s)	339, 777, 856, 899, 911
MluNI	TGGCCA	1 cut(s)	1016
MnlI	CCTC	7 cut(s)	83, 754, 876, 879, 928, 1010, 1055
Mox20I	TGGCCA	1 cut(s)	1016
MroNI	GCCGGC	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	1016
MseI	TTAA	4 cut(s)	342, 585, 674, 855
Msp20I	TGGCCA	1 cut(s)	1016
MspCI	CTTAAG	1 cut(s)	673
MspI	CCGG	3 cut(s)	484, 532, 538
MspR9I	CCNGG	3 cut(s)	41, 538, 824
Mva1269I	GAATGC	1 cut(s)	442
MvaI	CCWGG	2 cut(s)	41, 824
MwoI	GCNNNNNNNGC	4 cut(s)	129, 650, 979, 1013
NaeI	GCCGGC	1 cut(s)	485
NciI	CCSGG	1 cut(s)	538
NdeII	GATC	1 cut(s)	873
NgoMIV	GCCGGC	1 cut(s)	483
NlaIII	CATG	4 cut(s)	219, 710, 935, 1027
NlaIV	GGNNCC	2 cut(s)	181, 536
NspV	TTCGAA	2 cut(s)	451, 696
PagI	TCATGA	1 cut(s)	1023
PciSI	GCTCTTC	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	1008
PctI	GAATGC	1 cut(s)	442
PdiI	GCCGGC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	5 cut(s)	621, 831, 891, 952, 1054
Psp6I	CCWGG	2 cut(s)	39, 822
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	2 cut(s)	39, 822
PspN4I	GGNNCC	2 cut(s)	181, 536
PspPI	GGNCC	4 cut(s)	49, 122, 179, 534
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SalI	GTCGAC	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	4 cut(s)	342, 585, 674, 855
SatI	GCNGC	5 cut(s)	620, 830, 890, 951, 1053
Sau3AI	GATC	1 cut(s)	873
Sau96I	GGNCC	4 cut(s)	49, 122, 179, 534
ScrFI	CCNGG	3 cut(s)	41, 538, 824
SduI	GDGCHC	1 cut(s)	809
SexAI	ACCWGGT	1 cut(s)	822
SfaNI	GCATC	6 cut(s)	217, 292, 791, 907, 960, 1038
SfuI	TTCGAA	2 cut(s)	451, 696
SinI	GGWCC	3 cut(s)	49, 179, 534
SmlI	CTYRAG	2 cut(s)	74, 673
SmoI	CTYRAG	2 cut(s)	74, 673
Sse9I	AATT	5 cut(s)	339, 777, 856, 899, 911
SsiI	CCGC	2 cut(s)	653, 829
SspMI	CTAG	2 cut(s)	35, 429
StyD4I	CCNGG	3 cut(s)	39, 536, 822
TaaI	ACNGT	2 cut(s)	506, 717
TaqI	TCGA	5 cut(s)	166, 417, 451, 696, 1002
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	5 cut(s)	339, 777, 856, 899, 911
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	1 cut(s)	832
Tru1I	TTAA	4 cut(s)	342, 585, 674, 855
Tru9I	TTAA	4 cut(s)	342, 585, 674, 855
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	4 cut(s)	619, 889, 950, 1052
TspDTI	ATGAA	4 cut(s)	426, 589, 809, 1012
TspRI	CASTG	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	46
Vha464I	CTTAAG	1 cut(s)	673
VpaK11BI	GGWCC	3 cut(s)	49, 179, 534
XagI	CCTNNNNNAGG	1 cut(s)	38
XbaI	TCTAGA	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	2 cut(s)	35, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.