Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005462

Physical Location & Seq

Genomic Coordinates Forward (+)

15401806 .. 15410272

Gene Structure 8467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCGCCCAAAACCTCAAGAAACTTGGTGAAGGTGGAAAACAAGACATGGAAAGTTTATGCTGGGAGTAGAACCATTGACATCGAGCTGACTACATTATCAAGCAACAATCACTTTGAACTAAACCCCAGTGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAGATCATTAAGGAAATTGCTAAAAATAGACCCTTTGACACAAAAGGAAAAAAGGGATATCAAATCTTGGTGTTGAATGAAGTTGACAAACTTTCCAGAGAAGCACATTCTTCAAAGGTTACTGAAGCAATCCGATCACGGTGTCTAAATGTGCGAATAAATGCACCAACAGACGAACAGATTGTTCAGGCATTGGAGTTCATTGGAAACAAAGAAGGGCTTCAACTTCCTTCTGGATTTGCTGCCCATCTAGCTGAAAAATCAAACAGGAACTTAAGGAGAGCTATATTGTCTCTAGAAACTTGTCATGTTCAACAGTATCCCTTTACAAGCAACCAAATAATTCCTTCGATAGATTGGGAAGAATATGTTTCAGAAATTGCCTCTGATATAATGAAGGAGCAGAGTCCGAAAAGGCTTTATGCCGTGCGCCAAAAGTTGTATGAGCTTCTTGTTAATTGTATCCCCCCTGAGATCATTCTTAAGAGGCTGCTTTATGAGTTATTGAAGAAATTGGATGCAGAATTGAAGCATGAGGTCAGCCATTGGGCAGCATATTATAAACATAGGATGCGTCTTGGGCAGAAAGCCATATTTCACCTCGAAGCGTTCGTGGCCAAGTTCATGAGTATTTACAAGGCTTTCCTCATTGCAGCGTTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

DNA_pol3_delta2

Protein Analysis

277

Amino Acids

31.79

Weight (kDa)

9.23

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_RFC1	PF25361	114 - 168	8.5e-06	RFC1-like, AAA+ ATPase lid domain
RCF1-5-like_lid	PF21960	119 - 157	5e-11	RCF1/5-like, AAA+ ATPase lid domain
RFC_C	PF22534	175 - 264	1e-31	Replication factor C subunit 3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27740
fragaria_vesca	FvH4_1g23560 FvH4_2g04970 FvH4_2g04970 FvH4_2g04970
malus_domestica	MD04G1041000.v1.1 MD04G1041300.v1.1 MD12G1011300.v1.1
prunus_persica	Prupe.1G194700_v2.0.a1 Prupe.1G194700_v2.0.a1 Prupe.4G268900_v2.0.a1 Prupe.4G268900_v2.0.a1 Prupe.7G013300_v2.0.a1 Prupe.7G013300_v2.0.a1 Prupe.7G013300_v2.0.a1
pyrus_communis	pycom12g00880
rosa_chinensis	RchiOBHm_Chr3g0496081
rosa_laevigata	RLG00000022564
rosa_multiflora	Rmu_sc0002392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00389580
rosa_rugosa	Rorug03G0279300 Rorug03G0279400 Rorug03G0279400 Rorug03G0279400 Rorug03G0279500
rosa_samantha	Rh3AG326500 Rh3BG362800 Rh3DG362200
rosa_wichuraiana	Rw3G028590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	726
AccB1I	GGYRCC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	780
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	5
AflII	CTTAAG	2 cut(s)	439, 647
AgsI	TTSAA	8 cut(s)	119, 164, 241, 279, 389, 479, 673, 694
AluBI	AGCT	4 cut(s)	88, 419, 449, 613
AluI	AGCT	4 cut(s)	88, 419, 449, 613
Alw26I	GTCTC	1 cut(s)	462
AoxI	GGCC	1 cut(s)	780
ApeKI	GCWGC	4 cut(s)	407, 655, 716, 818
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	2 cut(s)	7, 597
AsuHPI	GGTGA	2 cut(s)	40, 755
BalI	TGGCCA	1 cut(s)	782
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	3 cut(s)	394, 642, 728
BccI	CCATC	1 cut(s)	420
BceAI	ACGGC	1 cut(s)	575
BciVI	GTATCC	2 cut(s)	495, 638
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	2 cut(s)	416, 461
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	2 cut(s)	439, 647
BfuI	GTATCC	2 cut(s)	495, 638
BisI	GCNGC	4 cut(s)	408, 656, 717, 819
BlsI	GCNGC	4 cut(s)	409, 657, 718, 820
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	3 cut(s)	124, 673, 726
BmuI	ACTGGG	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	813
BseGI	GGATG	2 cut(s)	688, 741
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	3 cut(s)	394, 642, 728
BseYI	CCCAGC	1 cut(s)	62
BshFI	GGCC	1 cut(s)	782
BshNI	GGYRCC	1 cut(s)	4
BsmAI	GTCTC	1 cut(s)	462
BsnI	GGCC	1 cut(s)	782
Bsp143I	GATC	3 cut(s)	168, 299, 639
BspANI	GGCC	1 cut(s)	782
BspCNI	CTCAG	1 cut(s)	628
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	2 cut(s)	439, 647
BsrDI	GCAATG	1 cut(s)	813
BsrI	ACTGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	168, 299, 639
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	306, 483
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	2 cut(s)	439, 647
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	636
BstF5I	GGATG	2 cut(s)	688, 741
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 597
BstKTI	GATC	3 cut(s)	171, 302, 642
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	3 cut(s)	168, 299, 639
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 745, 779
BstV1I	GCAGC	3 cut(s)	394, 642, 728
BsuI	GTATCC	2 cut(s)	495, 638
BsuRI	GGCC	1 cut(s)	782
BtsCI	GGATG	2 cut(s)	688, 741
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	139
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	2 cut(s)	7, 597
CseI	GACGC	1 cut(s)	728
CviAII	CATG	4 cut(s)	48, 473, 698, 790
DdeI	CTNAG	1 cut(s)	636
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	170, 301, 641
DpnII	GATC	3 cut(s)	168, 299, 639
EaeI	YGGCCR	1 cut(s)	780
Eco32I	GATATC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	309
EcoRV	GATATC	1 cut(s)	224
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	4 cut(s)	51, 476, 701, 793
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FatI	CATG	4 cut(s)	47, 472, 697, 789
Fnu4HI	GCNGC	4 cut(s)	408, 656, 717, 819
FokI	GGATG	2 cut(s)	695, 748
Fsp4HI	GCNGC	4 cut(s)	408, 656, 717, 819
FspBI	CTAG	2 cut(s)	416, 461
GlaI	GCGC	2 cut(s)	6, 596
GluI	GCNGC	4 cut(s)	408, 656, 717, 819
GsaI	CCCAGC	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	782
HgaI	GACGC	1 cut(s)	728
HhaI	GCGC	2 cut(s)	7, 597
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	51, 476, 701, 793
Hin6I	GCGC	2 cut(s)	5, 595
HinP1I	GCGC	2 cut(s)	5, 595
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	571
HphI	GGTGA	2 cut(s)	40, 755
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	4 cut(s)	299, 541, 553, 576
Hpy188III	TCNNGA	7 cut(s)	18, 146, 164, 261, 399, 461, 790
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	5 cut(s)	25, 374, 405, 522, 556
HpyCH4III	ACNGT	2 cut(s)	306, 483
HpyCH4V	TGCA	4 cut(s)	137, 329, 686, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 745, 779
HpyF3I	CTNAG	1 cut(s)	636
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	51, 476, 701, 793
HspAI	GCGC	2 cut(s)	5, 595
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	168, 299, 639
LmnI	GCTCC	1 cut(s)	565
LpnPI	CCDG	9 cut(s)	48, 123, 131, 142, 274, 338, 384, 418, 648
Lsp1109I	GCAGC	3 cut(s)	394, 642, 728
LweI	GCATC	3 cut(s)	124, 673, 726
MaeI	CTAG	2 cut(s)	416, 461
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	3 cut(s)	170, 301, 641
MboI	GATC	3 cut(s)	168, 299, 639
MboII	GAAGA	3 cut(s)	267, 539, 685
MlsI	TGGCCA	1 cut(s)	782
MluCI	AATT	6 cut(s)	180, 507, 543, 622, 677, 689
MluNI	TGGCCA	1 cut(s)	782
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	580
MnlI	CCTC	6 cut(s)	25, 559, 645, 694, 776, 821
Mox20I	TGGCCA	1 cut(s)	782
MroXI	GAANNNNTTC	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	782
MseI	TTAA	4 cut(s)	174, 440, 621, 648
Msp20I	TGGCCA	1 cut(s)	782
MspCI	CTTAAG	2 cut(s)	439, 647
MwoI	GCNNNNNNNGC	3 cut(s)	416, 745, 779
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	168, 299, 639
NlaIII	CATG	4 cut(s)	51, 476, 701, 793
NlaIV	GGNNCC	1 cut(s)	6
PagI	TCATGA	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	384
PkrI	GCNGC	4 cut(s)	409, 657, 718, 820
PleI	GAGTC	1 cut(s)	579
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	579
PsiI	TTATAA	1 cut(s)	726
PspFI	CCCAGC	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	6
SaqAI	TTAA	4 cut(s)	174, 440, 621, 648
SatI	GCNGC	4 cut(s)	408, 656, 717, 819
Sau3AI	GATC	3 cut(s)	168, 299, 639
SchI	GAGTC	1 cut(s)	580
SetI	ASST	9 cut(s)	17, 36, 90, 285, 421, 451, 615, 705, 768
SfaNI	GCATC	3 cut(s)	124, 673, 726
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	3 cut(s)	16, 439, 647
SmoI	CTYRAG	3 cut(s)	16, 439, 647
Sse9I	AATT	6 cut(s)	180, 507, 543, 622, 677, 689
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	416, 461
TaaI	ACNGT	2 cut(s)	306, 483
TaqI	TCGA	3 cut(s)	84, 515, 768
TasI	AATT	6 cut(s)	180, 507, 543, 622, 677, 689
Tru1I	TTAA	4 cut(s)	174, 440, 621, 648
Tru9I	TTAA	4 cut(s)	174, 440, 621, 648
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	4 cut(s)	407, 655, 716, 818
TspDTI	ATGAA	4 cut(s)	258, 355, 575, 778
TspRI	CASTG	1 cut(s)	136
Vha464I	CTTAAG	2 cut(s)	439, 647
XbaI	TCTAGA	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	2 cut(s)	416, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.