Rorug03G0279500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000591
Physical Location & Seq
Reverse (-)
27712077 .. 27716930
4854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0279500.1

Sequence Viewer

Length: 1881 bp
ATGAGTTCAAGTCGAGGTGGTGGCAATCCCAAAGGAAAGCATGTCTCTGAAGTCAATAGCCTTAAGGTTGAGCAGTTGAGTCAGGATATAGGAGAAATTGACCTGGGCTCAACGCAAGATGATGGAAACTGGGAGGAGGTAGTTGGCAGGAAATCGAAGAACAGGGCTGGAAGTACTACTGCAAAATCATGGGGTTCTCAAAGTTCTACTTCTAAATCTTGGGGACAGCAAGATGCTCAGAAGCCAAGTATGCGGAGCATTGGTGGATCAGCACGGGCTGCTGGGAATGCCTGGACATCACAAGCTGTTGATTCTAGAAAATCGGCTGGGAGAGGAAATGTCTGGCAGCAGTCTACTGCTAGGAGTTTTGATAATAGGTCTGTGGCCCCGCAGCATGTAATTCCTCCCCCACTGGACCATGGATGGAACTGGCAGTCTAGGGCTGGTTCCACTCAACCTAAGGGTCCTGAAGATGACAAGAACAACTATGTGGATGATGATGGGGATGAATTATCTGATGCTGATGGTGATTCTGATGATGATCTATCTGATGAATTTGACTCGGATGCAAGTGTAAAGAGCCATGGAACTAGAAAGAAGAATCGGTTGCTCAAGAAATTTTTTGAGGTTTTGGATGGCTTAACTATTGAGGAGATTAATGATCCTGTGAGGCAGTGGCACTGTCCTGCTTGCCAAAAGGGTCCTGGTGCCATTGACTGGTACCGAGGGCTCCAGCCCCTCATGACCCATGCGAAGACTAAAGGTTCAATAAGGGCGAGGCTCCACAGAGAGCTTGCTGAACTTTTGGATGAGGAGTTACGGAGGAGGGGAACTACAGTTGTACCTGCTGGTGAAGCATTTGGAAAATGGAAAGGTCTAACAGTTGAGGAAAAGGATCATGAAATTGTGTGGCCACCAATGGTTATTATTATGAATACCTGGCTTGAACAGGATGATAACGACAAGTGGATAGGCATGGGGAATCAAGAGCTGCTTGACTACTTCAGCTCGTATGCTGCTGTGAGGGCTAGACACTCTTATGGACCACAGGGGCACCGTGGCATGAGTCTCCTAATATTTGAGTCATCTGCAAGAGGTTATTTTGAGGCGGAGCGTCTGCACAGGCATTTTATAGGGCAAAGGACAGACAGGGATGCTTGGGATCGTAGTAGTCGTGTCTTATTTCATCCAGGAGGGCAGCGTCAACTGTATGGGTACATGGCAATGAAAGATGACTTGGATATATTTAACCAACATTCCCAAGGTAAAGCCAAGCTGAAGTTTGAGATGAGGTCATATCAGGAGAAGGTTGTGAATGATCTGAGGCAAATGAGCGAGGACAATCAACAGCTTATCTGGTTGAAGAACAGGGTTGTTAAAGAACAGAGGCATGCAAAAGCTCTTGAAGAGTCTCTTGGTATTGTTAGTGAGAAGCTCCGCAAAACAACAGAGGAAAATCGTATTGTAAGACACAGGACCAAAACCCAACATGAAGAAACTAAGGAAGAGATGTATGAGCAAGAACAATTTTTCAAAGACCAAATCAAAATCATTCATGAATCAAGGGATGCTAAGGAAGAAGGTTTTGAGAGGCTGCAGCAGGAGCAGCGTGAGAAGGTGAAGCAGTCACATGGCCAGCCTTCACTTGACAGGTTGGTGGAAATTGCCAACTTCATCCAGTGCCAAGAGAAGGAGATGGAGGATTTTGTGGCAGAGAGGGACATGCTGATAAAAGTTCATGGAGAGAACAAGGCTGCAATGAAGCGGAGGCACTGGGAGGAGGAGGTCGGTCTGGAGGAAGATTTCGATGCCAAATTAACCCAGCTCATGGATAAGTACTCCAAGGTTCAGCCTGAAGCAGCTGCGAACTTTGAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

626

Amino Acids

71.64

Weight (kDa)

5.96

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-XS PF03470 228 - 266 1.9e-07 XS zinc finger domain
XS PF03468 299 - 413 3.5e-33 XS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 853
Acc65I GGTACC 1 cut(s) 720
AccB1I GGYRCC 3 cut(s) 707, 720, 1053
AccB7I CCANNNNNTGG 2 cut(s) 717, 1828
AccI GTMKAC 1 cut(s) 353
AciI CCGC 5 cut(s) 253, 389, 1109, 1438, 1765
AclWI GGATC 4 cut(s) 274, 656, 903, 1170
AcoI YGGCCR 2 cut(s) 911, 1633
AcsI RAATTY 2 cut(s) 554, 617
AcuI CTGAAG 5 cut(s) 69, 489, 988, 1298, 1875
AfaI GTAC 5 cut(s) 175, 722, 843, 1217, 1838
AfiI CCNNNNNNNGG 3 cut(s) 717, 1690, 1828
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 6 cut(s) 9, 768, 947, 1363, 1406, 1534
AjnI CCWGG 5 cut(s) 102, 290, 703, 938, 1189
AjuI GAANNNNNNNTTGG 4 cut(s) 1220, 1252, 1398, 1430
Alw26I GTCTC 3 cut(s) 49, 1073, 1416
AlwI GGATC 4 cut(s) 274, 656, 903, 1170
AoxI GGCC 3 cut(s) 384, 911, 1633
ApoI RAATTY 2 cut(s) 554, 617
AseI ATTAAT 1 cut(s) 657
Asp718I GGTACC 1 cut(s) 720
AspS9I GGNCC 6 cut(s) 385, 415, 464, 701, 1043, 1476
AsuHPI GGTGA 3 cut(s) 539, 863, 1630
AvaII GGWCC 5 cut(s) 415, 464, 701, 1043, 1476
AxyI CCTNAGG 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 1056
BaeI ACNNNNGTAYC 2 cut(s) 825, 858
BalI TGGCCA 2 cut(s) 913, 1635
BanI GGYRCC 3 cut(s) 707, 720, 1053
BanII GRGCYC 2 cut(s) 110, 732
BbsI GAAGAC 1 cut(s) 761
BccI CCATC 6 cut(s) 116, 417, 494, 518, 629, 1690
BciT130I CCWGG 5 cut(s) 104, 292, 705, 940, 1191
BcoDI GTCTC 3 cut(s) 49, 1073, 1416
BfaI CTAG 5 cut(s) 315, 360, 438, 591, 1029
BfmI CTRYAG 2 cut(s) 834, 1595
BfrI CTTAAG 1 cut(s) 62
BfuAI ACCTGC 1 cut(s) 853
BmcAI AGTACT 2 cut(s) 175, 1838
Bme1390I CCNGG 5 cut(s) 104, 292, 705, 940, 1191
Bme18I GGWCC 5 cut(s) 415, 464, 701, 1043, 1476
BmgT120I GGNCC 6 cut(s) 385, 415, 464, 701, 1043, 1476
BmiI GGNNCC 9 cut(s) 387, 448, 465, 702, 709, 722, 731, 782, 1055
BmrFI CCNGG 5 cut(s) 104, 292, 705, 940, 1191
BmrI ACTGGG 2 cut(s) 139, 1783
BmsI GCATC 6 cut(s) 223, 508, 556, 1144, 1558, 1798
BmuI ACTGGG 2 cut(s) 139, 1783
BpiI GAAGAC 1 cut(s) 761
BpmI CTGGAG 2 cut(s) 716, 1814
Bpu10I CCTNAGC 1 cut(s) 1572
BpuEI CTTGAG 1 cut(s) 596
BsaBI GATNNNNATC 1 cut(s) 540
BsaJI CCNNGG 7 cut(s) 103, 418, 583, 724, 1057, 1261, 1842
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 3 cut(s) 717, 1690, 1828
Bse1I ACTGG 6 cut(s) 134, 417, 434, 722, 1678, 1778
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 2 cut(s) 1230, 1764
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 5 cut(s) 104, 292, 705, 940, 1191
BseDI CCNNGG 7 cut(s) 103, 418, 583, 724, 1057, 1261, 1842
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 3 cut(s) 717, 1690, 1828
BseMI GCAATG 2 cut(s) 1230, 1764
BseMII CTCAG 2 cut(s) 251, 1313
BseNI ACTGG 6 cut(s) 134, 417, 434, 722, 1678, 1778
BseRI GAGGAG 6 cut(s) 149, 665, 827, 838, 1793, 1796
BseSI GKGCMC 1 cut(s) 1056
BseYI CCCAGC 3 cut(s) 281, 326, 1821
BsgI GTGCAG 1 cut(s) 1103
BshFI GGCC 3 cut(s) 386, 913, 1635
BshNI GGYRCC 3 cut(s) 707, 720, 1053
BslFI GGGAC 2 cut(s) 237, 1733
BslI CCNNNNNNNGG 3 cut(s) 717, 1690, 1828
BsmAI GTCTC 3 cut(s) 49, 1073, 1416
BsmFI GGGAC 2 cut(s) 237, 1733
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 3 cut(s) 386, 913, 1635
Bsp1286I GDGCHC 3 cut(s) 110, 732, 1056
Bsp143I GATC 6 cut(s) 266, 541, 661, 895, 1162, 1318
Bsp19I CCATGG 2 cut(s) 418, 583
BspACI CCGC 5 cut(s) 253, 389, 1109, 1438, 1765
BspANI GGCC 3 cut(s) 386, 913, 1635
BspCNI CTCAG 2 cut(s) 250, 1314
BspHI TCATGA 3 cut(s) 741, 898, 1555
BspLI GGNNCC 9 cut(s) 387, 448, 465, 702, 709, 722, 731, 782, 1055
BspMAI CTGCAG 1 cut(s) 1599
BspMI ACCTGC 1 cut(s) 853
BspPI GGATC 4 cut(s) 274, 656, 903, 1170
BspT107I GGYRCC 3 cut(s) 707, 720, 1053
BspTI CTTAAG 1 cut(s) 62
BsrDI GCAATG 2 cut(s) 1230, 1764
BsrI ACTGG 6 cut(s) 134, 417, 434, 722, 1678, 1778
BssECI CCNNGG 7 cut(s) 103, 418, 583, 724, 1057, 1261, 1842
BssMI GATC 6 cut(s) 266, 541, 661, 895, 1162, 1318
BssT1I CCWWGG 4 cut(s) 418, 583, 1261, 1842
Bst2UI CCWGG 5 cut(s) 104, 292, 705, 940, 1191
Bst4CI ACNGT 5 cut(s) 683, 838, 883, 1058, 1209
Bst6I CTCTTC 2 cut(s) 1401, 1500
BstAFI CTTAAG 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 278
BstC8I GCNNGC 4 cut(s) 691, 795, 1392, 1637
BstDEI CTNAG 5 cut(s) 237, 459, 1322, 1500, 1572
BstDSI CCRYGG 3 cut(s) 418, 583, 1057
BstKTI GATC 6 cut(s) 269, 544, 664, 898, 1165, 1321
BstMAI GTCTC 3 cut(s) 49, 1073, 1416
BstMBI GATC 6 cut(s) 266, 541, 661, 895, 1162, 1318
BstMWI GCNNNNNNNGC 7 cut(s) 250, 278, 287, 854, 1025, 1603, 1606
BstNI CCWGG 5 cut(s) 104, 292, 705, 940, 1191
BstNSI RCATGY 4 cut(s) 44, 398, 1394, 1726
BstSCI CCNGG 5 cut(s) 102, 290, 703, 938, 1189
BstSFI CTRYAG 2 cut(s) 834, 1595
BstSLI GKGCMC 1 cut(s) 1056
BstV2I GAAGAC 1 cut(s) 761
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 3 cut(s) 386, 913, 1635
BtgI CCRYGG 3 cut(s) 418, 583, 1057
BtsI GCAGTG 1 cut(s) 680
BtsIMutI CAGTG 5 cut(s) 410, 679, 680, 1685, 1771
BveI ACCTGC 1 cut(s) 853
Cac8I GCNNGC 4 cut(s) 691, 795, 1392, 1637
CciI TCATGA 3 cut(s) 741, 898, 1555
Cfr13I GGNCC 6 cut(s) 385, 415, 464, 701, 1043, 1476
CseI GACGC 2 cut(s) 1103, 1190
Csp6I GTAC 5 cut(s) 174, 721, 842, 1216, 1837
CviQI GTAC 5 cut(s) 174, 721, 842, 1216, 1837
DdeI CTNAG 5 cut(s) 237, 459, 1322, 1500, 1572
DpnI GATC 6 cut(s) 268, 543, 663, 897, 1164, 1320
DpnII GATC 6 cut(s) 266, 541, 661, 895, 1162, 1318
EaeI YGGCCR 2 cut(s) 911, 1633
Eam1104I CTCTTC 2 cut(s) 1401, 1500
EarI CTCTTC 2 cut(s) 1401, 1500
EciI GGCGGA 1 cut(s) 1124
Eco130I CCWWGG 4 cut(s) 418, 583, 1261, 1842
Eco24I GRGCYC 2 cut(s) 110, 732
Eco47I GGWCC 5 cut(s) 415, 464, 701, 1043, 1476
Eco57I CTGAAG 5 cut(s) 69, 489, 988, 1298, 1875
Eco81I CCTNAGG 1 cut(s) 459
EcoO109I RGGNCCY 2 cut(s) 464, 701
EcoRII CCWGG 5 cut(s) 102, 290, 703, 938, 1189
EcoT14I CCWWGG 4 cut(s) 418, 583, 1261, 1842
EcoT38I GRGCYC 2 cut(s) 110, 732
ErhI CCWWGG 4 cut(s) 418, 583, 1261, 1842
FalI AAGNNNNNCTT 6 cut(s) 193, 225, 978, 1010, 1398, 1430
FaqI GGGAC 2 cut(s) 237, 1733
FauI CCCGC 1 cut(s) 396
FblI GTMKAC 1 cut(s) 353
FriOI GRGCYC 2 cut(s) 110, 732
FspBI CTAG 5 cut(s) 315, 360, 438, 591, 1029
GsaI CCCAGC 3 cut(s) 285, 330, 1825
GsuI CTGGAG 2 cut(s) 716, 1814
HaeIII GGCC 3 cut(s) 386, 913, 1635
HgaI GACGC 2 cut(s) 1103, 1190
HincII GTYRAC 1 cut(s) 1205
HindII GTYRAC 1 cut(s) 1205
HphI GGTGA 3 cut(s) 539, 863, 1630
Hpy166II GTNNAC 2 cut(s) 354, 1205
Hpy188I TCNGA 7 cut(s) 49, 240, 517, 535, 550, 565, 1323
Hpy8I GTNNAC 2 cut(s) 354, 1205
HpyAV CCTTC 5 cut(s) 1300, 1574, 1609, 1650, 1684
HpyCH4III ACNGT 5 cut(s) 683, 838, 883, 1058, 1209
HpyCH4V TGCA 7 cut(s) 182, 569, 1091, 1120, 1394, 1597, 1757
HpyF10VI GCNNNNNNNGC 7 cut(s) 250, 278, 287, 854, 1025, 1603, 1606
HpyF3I CTNAG 5 cut(s) 237, 459, 1322, 1500, 1572
KpnI GGTACC 1 cut(s) 724
Kzo9I GATC 6 cut(s) 266, 541, 661, 895, 1162, 1318
LmnI GCTCC 6 cut(s) 255, 735, 786, 1111, 1440, 1603
LweI GCATC 6 cut(s) 223, 508, 556, 1144, 1558, 1798
MaeI CTAG 5 cut(s) 315, 360, 438, 591, 1029
MaeIII GTNAC 2 cut(s) 816, 1626
MalI GATC 6 cut(s) 268, 543, 663, 897, 1164, 1320
MboI GATC 6 cut(s) 266, 541, 661, 895, 1162, 1318
MhlI GDGCHC 3 cut(s) 110, 732, 1056
MlsI TGGCCA 2 cut(s) 913, 1635
MluCI AATT 9 cut(s) 96, 399, 509, 554, 617, 903, 1526, 1662, 1814
MluNI TGGCCA 2 cut(s) 913, 1635
MlyI GAGTC 5 cut(s) 88, 554, 1075, 1091, 1418
Mox20I TGGCCA 2 cut(s) 913, 1635
MscI TGGCCA 2 cut(s) 913, 1635
MseI TTAA 6 cut(s) 63, 641, 657, 1248, 1377, 1817
MslI CAYNNNNRTG 2 cut(s) 1038, 1223
Msp20I TGGCCA 2 cut(s) 913, 1635
MspA1I CMGCKG 1 cut(s) 1862
MspCI CTTAAG 1 cut(s) 62
MspR9I CCNGG 5 cut(s) 104, 292, 705, 940, 1191
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 5 cut(s) 104, 292, 705, 940, 1191
MwoI GCNNNNNNNGC 7 cut(s) 250, 278, 287, 854, 1025, 1603, 1606
NcoI CCATGG 2 cut(s) 418, 583
NdeII GATC 6 cut(s) 266, 541, 661, 895, 1162, 1318
NlaIV GGNNCC 9 cut(s) 387, 448, 465, 702, 709, 722, 731, 782, 1055
NmuCI GTSAC 1 cut(s) 1626
NspI RCATGY 4 cut(s) 44, 398, 1394, 1726
PaeI GCATGC 1 cut(s) 1394
PagI TCATGA 3 cut(s) 741, 898, 1555
PcsI WCGNNNNNNNCGW 1 cut(s) 1171
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 5 cut(s) 311, 530, 601, 982, 1559
PflMI CCANNNNNTGG 2 cut(s) 717, 1828
PfoI TCCNGGA 1 cut(s) 1189
PleI GAGTC 5 cut(s) 87, 554, 1074, 1090, 1417
PpsI GAGTC 5 cut(s) 87, 554, 1074, 1090, 1417
PpuMI RGGWCCY 2 cut(s) 464, 701
PshBI ATTAAT 1 cut(s) 657
Psp5II RGGWCCY 2 cut(s) 464, 701
Psp6I CCWGG 5 cut(s) 102, 290, 703, 938, 1189
PspFI CCCAGC 3 cut(s) 281, 326, 1821
PspGI CCWGG 5 cut(s) 102, 290, 703, 938, 1189
PspN4I GGNNCC 9 cut(s) 387, 448, 465, 702, 709, 722, 731, 782, 1055
PspPI GGNCC 6 cut(s) 385, 415, 464, 701, 1043, 1476
PspPPI RGGWCCY 2 cut(s) 464, 701
PstI CTGCAG 1 cut(s) 1599
PvuII CAGCTG 1 cut(s) 1862
RsaI GTAC 5 cut(s) 175, 722, 843, 1217, 1838
RsaNI GTAC 5 cut(s) 174, 721, 842, 1216, 1837
RseI CAYNNNNRTG 2 cut(s) 1038, 1223
SaqAI TTAA 6 cut(s) 63, 641, 657, 1248, 1377, 1817
Sau3AI GATC 6 cut(s) 266, 541, 661, 895, 1162, 1318
Sau96I GGNCC 6 cut(s) 385, 415, 464, 701, 1043, 1476
ScaI AGTACT 2 cut(s) 175, 1838
SchI GAGTC 5 cut(s) 88, 554, 1075, 1091, 1418
ScrFI CCNGG 5 cut(s) 104, 292, 705, 940, 1191
SduI GDGCHC 3 cut(s) 110, 732, 1056
SfaNI GCATC 6 cut(s) 223, 508, 556, 1144, 1558, 1798
SfcI CTRYAG 2 cut(s) 834, 1595
SinI GGWCC 5 cut(s) 415, 464, 701, 1043, 1476
SmiMI CAYNNNNRTG 2 cut(s) 1038, 1223
SmlI CTYRAG 2 cut(s) 62, 611
SmoI CTYRAG 2 cut(s) 62, 611
SphI GCATGC 1 cut(s) 1394
Sse9I AATT 9 cut(s) 96, 399, 509, 554, 617, 903, 1526, 1662, 1814
SsiI CCGC 5 cut(s) 253, 389, 1109, 1438, 1765
SspI AATATT 1 cut(s) 1077
SspMI CTAG 5 cut(s) 315, 360, 438, 591, 1029
StyD4I CCNGG 5 cut(s) 102, 290, 703, 938, 1189
StyI CCWWGG 4 cut(s) 418, 583, 1261, 1842
TaaI ACNGT 5 cut(s) 683, 838, 883, 1058, 1209
TaqI TCGA 3 cut(s) 13, 155, 1806
TaqII GACCGA 1 cut(s) 1778
TasI AATT 9 cut(s) 96, 399, 509, 554, 617, 903, 1526, 1662, 1814
TatI WGTACW 2 cut(s) 173, 1836
TfiI GAWTC 5 cut(s) 311, 530, 601, 982, 1559
Tru1I TTAA 6 cut(s) 63, 641, 657, 1248, 1377, 1817
Tru9I TTAA 6 cut(s) 63, 641, 657, 1248, 1377, 1817
TscAI CASTG 5 cut(s) 417, 680, 686, 1685, 1778
TseFI GTSAC 1 cut(s) 1626
Tsp45I GTSAC 1 cut(s) 1626
TspGWI ACGGA 1 cut(s) 835
TspRI CASTG 5 cut(s) 417, 680, 686, 1685, 1778
Van91I CCANNNNNTGG 2 cut(s) 717, 1828
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 5 cut(s) 415, 464, 701, 1043, 1476
VspI ATTAAT 1 cut(s) 657
XapI RAATTY 2 cut(s) 554, 617
XbaI TCTAGA 1 cut(s) 314
XceI RCATGY 4 cut(s) 44, 398, 1394, 1726
XcmI CCANNNNNNNNNTGG 1 cut(s) 701
XmiI GTMKAC 1 cut(s) 353
XspI CTAG 5 cut(s) 315, 360, 438, 591, 1029
ZrmI AGTACT 2 cut(s) 175, 1838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.