Rmu_sc0008348.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008348.1
OG0000591
Physical Location & Seq
Forward (+)
5078 .. 5851
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008348.1_g000001.1.cds

Sequence Viewer

Length: 774 bp
atgcctggagaagtattttatgggagagacatacttcgagctggtattcagcgtcatattgggaatggtctgtctactaacatttggacagacccgtggttatgtggggaggagttgggtgtttatctttcggatcgtgttacatatgtagctgacctcttcctgtccccaggtgtgtggaattctactttgctttcagaactttttcctgctcatattgttcaaaggatccttaatattccgcttagtccctggaatcatgaggatagatggatttggggtggggacaaaaaaggccggtttacagtgaattcagcctaccatgtggctcgacacagagttcttgctgatcattcttccgcactcaatccaagtgcggctctgtggaatcaattgtggaaagcttctgtgcccaatactgtgaaaatttgtgcatggaaagcagcggctaatattcttcctactcggagtaggctaagtgaacgtggtattgatcttgatacccaatgcccactctgtgacaaagacgttgagacgcctatccatgcggttcgtgactgtcctaacactgctagcttgattgaaggtgccaatttacccttggtttcgtcccctacaaacattgctgactggttggttactgtccataatttgactcctcaaaactttgccccttccttgatgatcttatgggctacttggagaaataggaatgccaaagtttgggatggagatttcaagcaagcctctgaggtggtccgcatgactttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

257

Amino Acids

28.85

Weight (kDa)

7.08

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 587
AccB7I CCANNNNNTGG 1 cut(s) 723
AccI GTMKAC 1 cut(s) 74
AciI CCGC 6 cut(s) 242, 360, 377, 446, 548, 760
AclWI GGATC 3 cut(s) 141, 223, 236
AcsI RAATTY 3 cut(s) 181, 310, 426
AcyI GRCGYC 1 cut(s) 536
AdeI CACNNNGTG 1 cut(s) 518
AfiI CCNNNNNNNGG 1 cut(s) 723
AgsI TTSAA 3 cut(s) 224, 584, 739
AjnI CCWGG 3 cut(s) 4, 169, 251
AluBI AGCT 4 cut(s) 41, 152, 404, 576
AluI AGCT 4 cut(s) 41, 152, 404, 576
Alw26I GTCTC 2 cut(s) 21, 527
AlwI GGATC 3 cut(s) 141, 223, 236
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 3 cut(s) 181, 310, 426
Asp700I GAANNNNTTC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 757
AsuNHI GCTAGC 1 cut(s) 572
AvaII GGWCC 1 cut(s) 757
BaeGI GKGCMC 1 cut(s) 414
BamHI GGATCC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 587
BbvI GCAGC 1 cut(s) 455
BccI CCATC 2 cut(s) 264, 722
BciT130I CCWGG 3 cut(s) 6, 171, 253
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 21, 527
BfaI CTAG 1 cut(s) 573
BisI GCNGC 3 cut(s) 378, 444, 447
BlsI GCNGC 3 cut(s) 379, 445, 448
Bme1390I CCNGG 3 cut(s) 6, 171, 253
Bme18I GGWCC 1 cut(s) 757
BmgT120I GGNCC 1 cut(s) 757
BmiI GGNNCC 2 cut(s) 230, 589
BmrFI CCNGG 3 cut(s) 6, 171, 253
BmtI GCTAGC 1 cut(s) 576
BpmI CTGGAG 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 536
BsaJI CCNNGG 4 cut(s) 95, 169, 251, 600
Bsc4I CCNNNNNNNGG 1 cut(s) 723
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 635
Bse3DI GCAATG 1 cut(s) 621
BseBI CCWGG 3 cut(s) 6, 171, 253
BseDI CCNNGG 4 cut(s) 95, 169, 251, 600
BseGI GGATG 1 cut(s) 733
BseLI CCNNNNNNNGG 1 cut(s) 723
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 1 cut(s) 741
BseNI ACTGG 1 cut(s) 635
BseRI GAGGAG 2 cut(s) 125, 648
BseSI GKGCMC 1 cut(s) 414
BseXI GCAGC 1 cut(s) 455
BshFI GGCC 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 587
BsiSI CCGG 1 cut(s) 298
BslFI GGGAC 4 cut(s) 151, 234, 299, 595
BslI CCNNNNNNNGG 1 cut(s) 723
BsmAI GTCTC 2 cut(s) 21, 527
BsmBI CGTCTC 1 cut(s) 527
BsmFI GGGAC 4 cut(s) 151, 234, 299, 595
BsmI GAATGC 1 cut(s) 718
BsnI GGCC 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 5 cut(s) 133, 228, 349, 493, 684
BspACI CCGC 6 cut(s) 242, 360, 377, 446, 548, 760
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 1 cut(s) 742
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 230, 589
BspOI GCTAGC 1 cut(s) 576
BspPI GGATC 3 cut(s) 141, 223, 236
BspT107I GGYRCC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 621
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 1 cut(s) 635
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 4 cut(s) 95, 169, 251, 600
BssMI GATC 5 cut(s) 133, 228, 349, 493, 684
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 3 cut(s) 6, 171, 253
Bst4CI ACNGT 4 cut(s) 307, 421, 560, 643
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 574, 744
BstDEI CTNAG 3 cut(s) 245, 476, 750
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 733
BstKTI GATC 5 cut(s) 136, 231, 352, 496, 687
BstMAI GTCTC 2 cut(s) 21, 527
BstMBI GATC 5 cut(s) 133, 228, 349, 493, 684
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNI CCWGG 3 cut(s) 6, 171, 253
BstSCI CCNGG 3 cut(s) 4, 169, 251
BstSLI GKGCMC 1 cut(s) 414
BstV1I GCAGC 1 cut(s) 455
BstX2I RGATCY 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 177
BstYI RGATCY 1 cut(s) 228
BsuRI GGCC 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 95
BtsCI GGATG 1 cut(s) 733
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 312, 567
Cac8I GCNNGC 2 cut(s) 574, 744
CciI TCATGA 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 757
CseI GACGC 2 cut(s) 41, 544
CviAII CATG 5 cut(s) 260, 323, 435, 545, 763
DdeI CTNAG 3 cut(s) 245, 476, 750
DpnI GATC 5 cut(s) 135, 230, 351, 495, 686
DpnII GATC 5 cut(s) 133, 228, 349, 493, 684
DraIII CACNNNGTG 1 cut(s) 518
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 757
EcoRI GAATTC 2 cut(s) 181, 310
EcoRII CCWGG 3 cut(s) 4, 169, 251
EcoT14I CCWWGG 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 600
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 5 cut(s) 263, 326, 438, 548, 766
FaqI GGGAC 4 cut(s) 151, 234, 299, 595
FatI CATG 5 cut(s) 259, 322, 434, 544, 762
FauNDI CATATG 1 cut(s) 145
FbaI TGATCA 1 cut(s) 349
FblI GTMKAC 1 cut(s) 74
Fnu4HI GCNGC 3 cut(s) 378, 444, 447
FokI GGATG 1 cut(s) 740
Fsp4HI GCNGC 3 cut(s) 378, 444, 447
FspBI CTAG 1 cut(s) 573
GluI GCNGC 3 cut(s) 378, 444, 447
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 298
HgaI GACGC 2 cut(s) 41, 544
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 5 cut(s) 263, 326, 438, 548, 766
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 3 cut(s) 256, 388, 655
HpaII CCGG 1 cut(s) 298
Hpy166II GTNNAC 3 cut(s) 75, 303, 482
Hpy188I TCNGA 4 cut(s) 133, 199, 468, 751
Hpy188III TCNNGA 3 cut(s) 260, 497, 554
Hpy8I GTNNAC 3 cut(s) 75, 303, 482
HpyAV CCTTC 2 cut(s) 578, 684
HpyCH4III ACNGT 4 cut(s) 307, 421, 560, 643
HpyCH4IV ACGT 2 cut(s) 484, 528
HpyCH4V TGCA 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 3 cut(s) 245, 476, 750
HpySE526I ACGT 2 cut(s) 484, 528
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 5 cut(s) 263, 326, 438, 548, 766
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 5 cut(s) 133, 228, 349, 493, 684
Lsp1109I GCAGC 1 cut(s) 455
MaeI CTAG 1 cut(s) 573
MaeII ACGT 2 cut(s) 484, 528
MaeIII GTNAC 4 cut(s) 139, 518, 554, 637
MalI GATC 5 cut(s) 135, 230, 351, 495, 686
MboI GATC 5 cut(s) 133, 228, 349, 493, 684
MboII GAAGA 3 cut(s) 151, 348, 449
MfeI CAATTG 1 cut(s) 392
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 6 cut(s) 181, 310, 392, 426, 592, 649
MlyI GAGTC 1 cut(s) 649
MnlI CCTC 6 cut(s) 103, 167, 256, 669, 745, 757
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 3 cut(s) 6, 171, 253
MunI CAATTG 1 cut(s) 392
Mva1269I GAATGC 1 cut(s) 718
MvaI CCWGG 3 cut(s) 6, 171, 253
MwoI GCNNNNNNNGC 1 cut(s) 440
NdeI CATATG 1 cut(s) 145
NdeII GATC 5 cut(s) 133, 228, 349, 493, 684
NheI GCTAGC 1 cut(s) 572
NlaIII CATG 5 cut(s) 263, 326, 438, 548, 766
NlaIV GGNNCC 2 cut(s) 230, 589
NmuCI GTSAC 2 cut(s) 518, 554
PagI TCATGA 1 cut(s) 259
PctI GAATGC 1 cut(s) 718
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 256, 388
PflMI CCANNNNNTGG 1 cut(s) 723
PkrI GCNGC 3 cut(s) 379, 445, 448
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
Psp6I CCWGG 3 cut(s) 4, 169, 251
PspGI CCWGG 3 cut(s) 4, 169, 251
PspN4I GGNNCC 2 cut(s) 230, 589
PspPI GGNCC 1 cut(s) 757
PsuI RGATCY 1 cut(s) 228
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 3 cut(s) 378, 444, 447
Sau3AI GATC 5 cut(s) 133, 228, 349, 493, 684
Sau96I GGNCC 1 cut(s) 757
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 3 cut(s) 6, 171, 253
SduI GDGCHC 1 cut(s) 414
SinI GGWCC 1 cut(s) 757
Sse9I AATT 6 cut(s) 181, 310, 392, 426, 592, 649
SsiI CCGC 6 cut(s) 242, 360, 377, 446, 548, 760
SspI AATATT 2 cut(s) 238, 454
SspMI CTAG 1 cut(s) 573
StyD4I CCNGG 3 cut(s) 4, 169, 251
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 4 cut(s) 307, 421, 560, 643
TaiI ACGT 2 cut(s) 487, 531
TaqI TCGA 2 cut(s) 37, 331
TasI AATT 6 cut(s) 181, 310, 392, 426, 592, 649
TauI GCSGC 2 cut(s) 380, 449
TfiI GAWTC 2 cut(s) 256, 388
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 2 cut(s) 312, 574
TseFI GTSAC 2 cut(s) 518, 554
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 2 cut(s) 518, 554
TspRI CASTG 2 cut(s) 312, 574
Van91I CCANNNNNTGG 1 cut(s) 723
VpaK11BI GGWCC 1 cut(s) 757
XapI RAATTY 3 cut(s) 181, 310, 426
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XmiI GTMKAC 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.