Rmu_sc0030178.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030178.1
OG0000591
Physical Location & Seq
Reverse (-)
2 .. 441
440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030178.1_g000001.1.cds

Sequence Viewer

Length: 440 bp
atgggaggcatgggattccggcacttgcttgcttttaatttggcgatgttggcaaaacaaggatggcgattagttcaaaatccagattcgttaattgggcaactgttgaaagctatttatttttcccattgtagtttttgggaagcatccgtaggtgatcaaccctcttatgcttggaggagtataatgcaaggtagaaatattcttcgtgctggcattcgacgtcatattggcaatggattaactactaatatctggtccgacccatggctaactggagaggacttgagttcctttcggtctgcggttgctgcggtggtagccgacctgttcctttctccaggtgagtggaatttaccactgttatctagcttgtttcctccacgtcttgtccgcaaaatccaagagttacctctgagtccccacagccatggtgatcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

147

Amino Acids

16.45

Weight (kDa)

9.84

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 226
AciI CCGC 3 cut(s) 305, 314, 394
AcsI RAATTY 1 cut(s) 352
AcyI GRCGYC 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 2 cut(s) 77, 109
AjiI CACGTC 1 cut(s) 386
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 2 cut(s) 113, 372
AluI AGCT 2 cut(s) 113, 372
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 167, 356
AvaII GGWCC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 298
BccI CCATC 1 cut(s) 57
BciT130I CCWGG 1 cut(s) 342
BclI TGATCA 1 cut(s) 157
BfaI CTAG 1 cut(s) 369
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 258
BmgBI CACGTC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 155
BpmI CTGGAG 2 cut(s) 297, 324
BpuEI CTTGAG 1 cut(s) 307
BsaHI GRCGYC 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 266, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 266, 430
BseGI GGATG 2 cut(s) 68, 146
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 298
BsiSI CCGG 1 cut(s) 19
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 405
BsmI GAATGC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 157, 436
Bsp19I CCATGG 2 cut(s) 266, 430
BspACI CCGC 3 cut(s) 305, 314, 394
BspCNI CTCAG 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 241
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 266, 430
BssMI GATC 2 cut(s) 157, 436
BssNI GRCGYC 1 cut(s) 223
BssT1I CCWWGG 2 cut(s) 266, 430
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 105, 363
BstACI GRCGYC 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 30, 214
BstDEI CTNAG 1 cut(s) 416
BstDSI CCRYGG 2 cut(s) 266, 430
BstF5I GGATG 2 cut(s) 68, 146
BstKTI GATC 2 cut(s) 160, 439
BstMBI GATC 2 cut(s) 157, 436
BstMWI GCNNNNNNNGC 3 cut(s) 50, 311, 320
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstV1I GCAGC 1 cut(s) 298
BstXI CCANNNNNNTGG 2 cut(s) 348, 431
BtgI CCRYGG 2 cut(s) 266, 430
BtgZI GCGATG 1 cut(s) 59
BtrI CACGTC 1 cut(s) 386
BtsCI GGATG 2 cut(s) 68, 146
BtsIMutI CAGTG 1 cut(s) 359
Cac8I GCNNGC 2 cut(s) 30, 214
Cfr13I GGNCC 1 cut(s) 258
CviAII CATG 3 cut(s) 10, 267, 431
CviJI RGCY 5 cut(s) 113, 271, 323, 372, 429
CviKI_1 RGCY 5 cut(s) 113, 271, 323, 372, 429
DdeI CTNAG 1 cut(s) 416
DpnI GATC 2 cut(s) 159, 438
DpnII GATC 2 cut(s) 157, 436
Eco130I CCWWGG 2 cut(s) 266, 430
Eco47I GGWCC 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 2 cut(s) 266, 430
ErhI CCWWGG 2 cut(s) 266, 430
FaeI CATG 3 cut(s) 13, 270, 434
FaiI YATR 6 cut(s) 11, 171, 185, 228, 268, 432
FaqI GGGAC 1 cut(s) 405
FatI CATG 3 cut(s) 9, 266, 430
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 2 cut(s) 75, 133
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 369
GluI GCNGC 1 cut(s) 312
GsuI CTGGAG 2 cut(s) 297, 324
HapII CCGG 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 3 cut(s) 13, 270, 434
HinfI GANTC 3 cut(s) 15, 86, 418
HpaII CCGG 1 cut(s) 19
HphI GGTGA 2 cut(s) 167, 356
Hpy188I TCNGA 2 cut(s) 262, 417
Hpy188III TCNNGA 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 225
HpyCH4III ACNGT 2 cut(s) 105, 363
HpyCH4IV ACGT 2 cut(s) 223, 385
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 311, 320
HpyF3I CTNAG 1 cut(s) 416
HpySE526I ACGT 2 cut(s) 223, 385
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 3 cut(s) 13, 270, 434
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 2 cut(s) 157, 436
LpnPI CCDG 8 cut(s) 32, 96, 198, 241, 261, 327, 341, 354
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 1 cut(s) 155
MaeI CTAG 1 cut(s) 369
MaeII ACGT 2 cut(s) 223, 385
MaeIII GTNAC 1 cut(s) 408
MalI GATC 2 cut(s) 159, 438
MboI GATC 2 cut(s) 157, 436
MboII GAAGA 1 cut(s) 197
MluCI AATT 3 cut(s) 37, 93, 352
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 5 cut(s) 171, 175, 274, 390, 423
MseI TTAA 3 cut(s) 36, 92, 242
MslI CAYNNNNRTG 1 cut(s) 429
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 50, 311, 320
NcoI CCATGG 2 cut(s) 266, 430
NdeII GATC 2 cut(s) 157, 436
NlaIII CATG 3 cut(s) 13, 270, 434
PctI GAATGC 1 cut(s) 216
PfeI GAWTC 2 cut(s) 15, 86
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspPI GGNCC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 3 cut(s) 36, 92, 242
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 2 cut(s) 157, 436
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 1 cut(s) 427
ScrFI CCNGG 1 cut(s) 342
SetI ASST 9 cut(s) 115, 157, 196, 226, 330, 346, 374, 388, 415
SfaNI GCATC 1 cut(s) 155
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 3 cut(s) 37, 93, 352
SsiI CCGC 3 cut(s) 305, 314, 394
SspI AATATT 1 cut(s) 202
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 2 cut(s) 266, 430
TaaI ACNGT 2 cut(s) 105, 363
TaiI ACGT 2 cut(s) 226, 388
TaqI TCGA 1 cut(s) 220
TaqII GACCGA 1 cut(s) 288
TasI AATT 3 cut(s) 37, 93, 352
TfiI GAWTC 2 cut(s) 15, 86
Tru1I TTAA 3 cut(s) 36, 92, 242
Tru9I TTAA 3 cut(s) 36, 92, 242
TscAI CASTG 1 cut(s) 366
TseI GCWGC 1 cut(s) 311
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 1 cut(s) 366
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 352
XspI CTAG 1 cut(s) 369
ZraI GACGTC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.