Rmu_sc0003337.1_g000039

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003337.1
OG0000591
Physical Location & Seq
Forward (+)
159511 .. 163149
3639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003337.1_g000039.1.cds

Sequence Viewer

Length: 1752 bp
atgcttggaggagtattttacagggcagagatattcttcgggctggtatccgtcgccatgttggacatgaagattcaggcattacctttgagtcctcacaaccatagggatcggtggatttggggaggtgataagaagggcaagtttactgtgaggtctgcgtatcatattgctaggagtagaattctggaggatgattcttctactcctaatcctagtgctattctctggaagcaactttggcaagctccggtaccagggaatgtgaaggtgtgtgcctggaaggcagcttccaatattcttcctacacgaagtcggcttagcgaaagaggtattgatattgatacccaatgcccattttgtggtgaagaagtggaatctcctatccatgcagtaagtattcttcatgtggctgatatcccaactcttactaatgcatcatgtgtagcagattggttgattgatatctatacacttgctcatgtggccttttctcctttgttaaggttgatttgggctacttggagaaacaggaattcacggatctgggatgaagaatgtaaatcagctcatgaaattgtgcctttgactctgggttggtggaatgactataaggatgctcatgctccacttgttcaggataatggtccacgggttggctgggttaggagggattttcgggatcacgaaggctctgttgtggggggcttccgtcacaccctggaggtggttagcttacctagtcatgcggagctgctcgctctctttcaaggtgtgcagttagcacttgattaccatctaacccctttggtggtagaatctgactgcatggatttagtacaagctattcaggggtcttccctggaccactcgtacctgggtttcctgttaaaggacttgagagccttattgcatgatgctctaggtgcaagagtatgttacggtaatcagaaggctaatttagtggcgcatactctagcacaagaggccaaagctggccagtttagtgtgaatttcttcaccaatattcctcccagtgtggaggcttttagacctctactcctcagactctcggaccaccgcgccggactgggccctaccccgcgagacttcattccagaggaagcgctcgccctttacggtctgcctatccgtcgacccattccagtcctcagaaggactcctggagattgtaatagctggggctcgcatttgcacagaaccaaaatagggcattggcccaccaccatcaacacggcggagctctcatggtatcgggaagagcgagcgcgagatctggctcgctggaacgcggcaggtattacccatactattgatctatgcttctgcctccctcgcggtggcaatcgttcactgctagctgcctttctttgtttctggaacaccgccaccaacacttttgattttcgattcggtcaaatgagcattaccttgttagatattcttaccattactgtgttacccggcaatggcgagccctacgcgcatggacaatttgattctaccaccttcacttcaaccacggcccaaaccggtcgcaccgcccatagcggttcttatccgcggtgggtatcctattaccgcaggaaacacaatgtaataagtgggattgctttcctggaatattggctctgcaagttcattttttgcacctccgccaaccagcccactggtccttggacttttctcgccacggccctctacaacggccgtcgcgtcgggctaggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

583

Amino Acids

65.45

Weight (kDa)

8.51

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1307
Acc65I GGTACC 1 cut(s) 253
AccB1I GGYRCC 1 cut(s) 253
AccB7I CCANNNNNTGG 2 cut(s) 362, 656
AccI GTMKAC 1 cut(s) 1156
AccII CGCG 8 cut(s) 1083, 1105, 1291, 1313, 1359, 1505, 1585, 1737
AclWI GGATC 3 cut(s) 117, 551, 690
AcoI YGGCCR 2 cut(s) 997, 1729
AcsI RAATTY 3 cut(s) 183, 535, 1012
AfaI GTAC 3 cut(s) 255, 840, 875
AfeI AGCGCT 1 cut(s) 1128
AfiI CCNNNNNNNGG 9 cut(s) 257, 362, 656, 727, 811, 892, 1230, 1361, 1490
AgeI ACCGGT 1 cut(s) 1553
AgsI TTSAA 2 cut(s) 770, 1539
AjnI CCWGG 7 cut(s) 256, 278, 720, 861, 876, 1183, 1638
Alw21I GWGCWC 1 cut(s) 1266
Alw26I GTCTC 1 cut(s) 1101
AlwI GGATC 3 cut(s) 117, 551, 690
Aor51HI AGCGCT 1 cut(s) 1128
AoxI GGCC 8 cut(s) 486, 987, 997, 1093, 1238, 1545, 1716, 1729
ApaI GGGCCC 1 cut(s) 1097
ApeKI GCWGC 3 cut(s) 287, 754, 1382
ApoI RAATTY 3 cut(s) 183, 535, 1012
AsiGI ACCGGT 1 cut(s) 1553
Asp700I GAANNNNTTC 1 cut(s) 1016
Asp718I GGTACC 1 cut(s) 253
AspLEI GCGC 5 cut(s) 970, 1085, 1129, 1291, 1507
AspS9I GGNCC 9 cut(s) 647, 865, 1075, 1093, 1094, 1239, 1546, 1694, 1717
AsuC2I CCSGG 1 cut(s) 1485
AsuHPI GGTGA 3 cut(s) 140, 377, 1012
AsuNHI GCTAGC 1 cut(s) 1378
AvaII GGWCC 4 cut(s) 647, 865, 1075, 1694
BaeGI GKGCMC 1 cut(s) 1097
BalI TGGCCA 1 cut(s) 999
BanI GGYRCC 1 cut(s) 253
BanII GRGCYC 4 cut(s) 1097, 1208, 1266, 1500
BarI GAAGNNNNNNTAC 2 cut(s) 387, 419
BbsI GAAGAC 1 cut(s) 849
Bbv12I GWGCWC 1 cut(s) 1266
BbvI GCAGC 3 cut(s) 299, 741, 1369
BccI CCATC 2 cut(s) 804, 1256
BceAI ACGGC 5 cut(s) 1272, 1560, 1716, 1731, 1744
BciT130I CCWGG 7 cut(s) 258, 280, 722, 863, 878, 1185, 1640
BciVI GTATCC 2 cut(s) 58, 1603
BcnI CCSGG 1 cut(s) 1485
BcoDI GTCTC 1 cut(s) 1101
BfaI CTAG 7 cut(s) 174, 216, 741, 923, 977, 1379, 1745
BfoI RGCGCY 1 cut(s) 1130
BfuAI ACCTGC 1 cut(s) 1307
BfuI GTATCC 2 cut(s) 58, 1603
BglI GCCNNNNNGGC 1 cut(s) 284
BglII AGATCT 1 cut(s) 1294
BisI GCNGC 4 cut(s) 288, 755, 1314, 1383
BlpI GCTNAGC 1 cut(s) 320
BlsI GCNGC 4 cut(s) 289, 756, 1315, 1384
Bme1390I CCNGG 8 cut(s) 258, 280, 722, 863, 878, 1185, 1485, 1640
Bme18I GGWCC 4 cut(s) 647, 865, 1075, 1694
BmgT120I GGNCC 9 cut(s) 647, 865, 1075, 1093, 1094, 1239, 1546, 1694, 1717
BmiI GGNNCC 2 cut(s) 255, 1095
BmrFI CCNGG 8 cut(s) 258, 280, 722, 863, 878, 1185, 1485, 1640
BmrI ACTGGG 2 cut(s) 1029, 1100
BmsI GCATC 3 cut(s) 446, 607, 907
BmtI GCTAGC 1 cut(s) 1382
BmuI ACTGGG 2 cut(s) 1029, 1100
BpiI GAAGAC 1 cut(s) 849
BpmI CTGGAG 3 cut(s) 209, 743, 1206
Bpu1102I GCTNAGC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 919
BpuMI CCSGG 1 cut(s) 1485
BsaBI GATNNNNATC 2 cut(s) 464, 795
BsaJI CCNNGG 9 cut(s) 257, 650, 720, 861, 877, 1542, 1583, 1697, 1713
BsaWI WCCGGW 2 cut(s) 250, 1553
BsaXI ACNNNNNCTCC 2 cut(s) 1044, 1074
Bsc4I CCNNNNNNNGG 9 cut(s) 257, 362, 656, 727, 811, 892, 1230, 1361, 1490
Bse118I RCCGGY 1 cut(s) 1553
Bse1I ACTGG 5 cut(s) 1000, 1035, 1095, 1166, 1696
Bse3DI GCAATG 1 cut(s) 1495
Bse8I GATNNNNATC 2 cut(s) 464, 795
BseBI CCWGG 7 cut(s) 258, 280, 722, 863, 878, 1185, 1640
BseDI CCNNGG 9 cut(s) 257, 650, 720, 861, 877, 1542, 1583, 1697, 1713
BseGI GGATG 3 cut(s) 199, 556, 622
BseJI GATNNNNATC 2 cut(s) 464, 795
BseLI CCNNNNNNNGG 9 cut(s) 257, 362, 656, 727, 811, 892, 1230, 1361, 1490
BseMI GCAATG 1 cut(s) 1495
BseMII CTCAG 2 cut(s) 1078, 1186
BseNI ACTGG 5 cut(s) 1000, 1035, 1095, 1166, 1696
BseRI GAGGAG 2 cut(s) 24, 1052
BseSI GKGCMC 1 cut(s) 1097
BseX3I CGGCCG 1 cut(s) 1729
BseXI GCAGC 3 cut(s) 299, 741, 1369
BseYI CCCAGC 2 cut(s) 660, 1200
BsgI GTGCAG 1 cut(s) 797
Bsh1236I CGCG 8 cut(s) 1083, 1105, 1291, 1313, 1359, 1505, 1585, 1737
Bsh1285I CGRYCG 2 cut(s) 1558, 1732
BshFI GGCC 8 cut(s) 488, 989, 999, 1095, 1240, 1547, 1718, 1731
BshNI GGYRCC 1 cut(s) 253
BshTI ACCGGT 1 cut(s) 1553
BsiEI CGRYCG 2 cut(s) 1558, 1732
BsiHKAI GWGCWC 1 cut(s) 1266
BsiSI CCGG 4 cut(s) 251, 1086, 1485, 1554
BslI CCNNNNNNNGG 9 cut(s) 257, 362, 656, 727, 811, 892, 1230, 1361, 1490
BsmAI GTCTC 1 cut(s) 1101
BsnI GGCC 8 cut(s) 488, 989, 999, 1095, 1240, 1547, 1718, 1731
Bsp120I GGGCCC 1 cut(s) 1093
Bsp1286I GDGCHC 4 cut(s) 1097, 1208, 1266, 1500
Bsp143I GATC 5 cut(s) 109, 543, 682, 1294, 1336
Bsp1720I GCTNAGC 1 cut(s) 320
BspANI GGCC 8 cut(s) 488, 989, 999, 1095, 1240, 1547, 1718, 1731
BspCNI CTCAG 2 cut(s) 1077, 1185
BspFNI CGCG 8 cut(s) 1083, 1105, 1291, 1313, 1359, 1505, 1585, 1737
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 2 cut(s) 255, 1095
BspMI ACCTGC 1 cut(s) 1307
BspOI GCTAGC 1 cut(s) 1382
BspPI GGATC 3 cut(s) 117, 551, 690
BspQI GCTCTTC 1 cut(s) 1275
BspT107I GGYRCC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 1495
BsrFI RCCGGY 1 cut(s) 1553
BsrI ACTGG 5 cut(s) 1000, 1035, 1095, 1166, 1696
BssAI RCCGGY 1 cut(s) 1553
BssECI CCNNGG 9 cut(s) 257, 650, 720, 861, 877, 1542, 1583, 1697, 1713
BssMI GATC 5 cut(s) 109, 543, 682, 1294, 1336
BssT1I CCWWGG 1 cut(s) 1697
Bst2UI CCWGG 7 cut(s) 258, 280, 722, 863, 878, 1185, 1640
Bst4CI ACNGT 4 cut(s) 151, 944, 1142, 1477
Bst6I CTCTTC 1 cut(s) 1275
BstC8I GCNNGC 9 cut(s) 246, 759, 997, 1131, 1208, 1287, 1303, 1380, 1496
BstDEI CTNAG 3 cut(s) 320, 1064, 1172
BstDSI CCRYGG 4 cut(s) 650, 1542, 1583, 1713
BstENI CCTNNNNNAGG 1 cut(s) 890
BstF5I GGATG 3 cut(s) 199, 556, 622
BstFNI CGCG 8 cut(s) 1083, 1105, 1291, 1313, 1359, 1505, 1585, 1737
BstH2I RGCGCY 1 cut(s) 1130
BstHHI GCGC 5 cut(s) 970, 1085, 1129, 1291, 1507
BstKTI GATC 5 cut(s) 112, 546, 685, 1297, 1339
BstMAI GTCTC 1 cut(s) 1101
BstMBI GATC 5 cut(s) 109, 543, 682, 1294, 1336
BstMCI CGRYCG 2 cut(s) 1558, 1732
BstMWI GCNNNNNNNGC 7 cut(s) 241, 284, 485, 926, 986, 1356, 1504
BstNI CCWGG 7 cut(s) 258, 280, 722, 863, 878, 1185, 1640
BstSCI CCNGG 8 cut(s) 256, 278, 720, 861, 876, 1183, 1483, 1638
BstSLI GKGCMC 1 cut(s) 1097
BstUI CGCG 8 cut(s) 1083, 1105, 1291, 1313, 1359, 1505, 1585, 1737
BstV1I GCAGC 3 cut(s) 299, 741, 1369
BstV2I GAAGAC 1 cut(s) 849
BstX2I RGATCY 2 cut(s) 543, 1294
BstXI CCANNNNNNTGG 1 cut(s) 1691
BstYI RGATCY 2 cut(s) 543, 1294
BstZI CGGCCG 1 cut(s) 1729
BsuI GTATCC 2 cut(s) 58, 1603
BsuRI GGCC 8 cut(s) 488, 989, 999, 1095, 1240, 1547, 1718, 1731
BtgI CCRYGG 4 cut(s) 650, 1542, 1583, 1713
BtsCI GGATG 3 cut(s) 199, 556, 622
BtsI GCAGTG 1 cut(s) 1373
BtsIMutI CAGTG 3 cut(s) 1042, 1373, 1689
BveI ACCTGC 1 cut(s) 1307
Cac8I GCNNGC 9 cut(s) 246, 759, 997, 1131, 1208, 1287, 1303, 1380, 1496
CciI TCATGA 1 cut(s) 571
CfoI GCGC 5 cut(s) 970, 1085, 1129, 1291, 1507
Cfr10I RCCGGY 1 cut(s) 1553
Cfr13I GGNCC 9 cut(s) 647, 865, 1075, 1093, 1094, 1239, 1546, 1694, 1717
Cfr42I CCGCGG 1 cut(s) 1586
CseI GACGC 1 cut(s) 1726
Csp6I GTAC 3 cut(s) 254, 839, 874
CspAI ACCGGT 1 cut(s) 1553
CviQI GTAC 3 cut(s) 254, 839, 874
DdeI CTNAG 3 cut(s) 320, 1064, 1172
DpnI GATC 5 cut(s) 111, 545, 684, 1296, 1338
DpnII GATC 5 cut(s) 109, 543, 682, 1294, 1336
EaeI YGGCCR 2 cut(s) 997, 1729
EagI CGGCCG 1 cut(s) 1729
Eam1104I CTCTTC 1 cut(s) 1275
EarI CTCTTC 1 cut(s) 1275
EciI GGCGGA 2 cut(s) 1274, 1666
Ecl136II GAGCTC 1 cut(s) 1264
EclXI CGGCCG 1 cut(s) 1729
Eco130I CCWWGG 1 cut(s) 1697
Eco24I GRGCYC 4 cut(s) 1097, 1208, 1266, 1500
Eco32I GATATC 2 cut(s) 418, 466
Eco47I GGWCC 4 cut(s) 647, 865, 1075, 1694
Eco47III AGCGCT 1 cut(s) 1128
Eco52I CGGCCG 1 cut(s) 1729
Eco53kI GAGCTC 1 cut(s) 1264
EcoICRI GAGCTC 1 cut(s) 1264
EcoNI CCTNNNNNAGG 1 cut(s) 890
EcoO109I RGGNCCY 1 cut(s) 1094
EcoRI GAATTC 2 cut(s) 183, 535
EcoRII CCWGG 7 cut(s) 256, 278, 720, 861, 876, 1183, 1638
EcoRV GATATC 2 cut(s) 418, 466
EcoT14I CCWWGG 1 cut(s) 1697
EcoT22I ATGCAT 1 cut(s) 439
EcoT38I GRGCYC 4 cut(s) 1097, 1208, 1266, 1500
ErhI CCWWGG 1 cut(s) 1697
FauI CCCGC 1 cut(s) 1110
FblI GTMKAC 1 cut(s) 1156
Fnu4HI GCNGC 4 cut(s) 288, 755, 1314, 1383
FokI GGATG 3 cut(s) 206, 563, 629
FriOI GRGCYC 4 cut(s) 1097, 1208, 1266, 1500
Fsp4HI GCNGC 4 cut(s) 288, 755, 1314, 1383
FspBI CTAG 7 cut(s) 174, 216, 741, 923, 977, 1379, 1745
GlaI GCGC 5 cut(s) 969, 1084, 1128, 1290, 1506
GluI GCNGC 4 cut(s) 288, 755, 1314, 1383
GsaI CCCAGC 2 cut(s) 664, 1204
GsuI CTGGAG 3 cut(s) 209, 743, 1206
HaeII RGCGCY 1 cut(s) 1130
HaeIII GGCC 8 cut(s) 488, 989, 999, 1095, 1240, 1547, 1718, 1731
HapII CCGG 4 cut(s) 251, 1086, 1485, 1554
HgaI GACGC 1 cut(s) 1726
HhaI GCGC 5 cut(s) 970, 1085, 1129, 1291, 1507
Hin6I GCGC 5 cut(s) 968, 1083, 1127, 1289, 1505
HinP1I GCGC 5 cut(s) 968, 1083, 1127, 1289, 1505
HincII GTYRAC 1 cut(s) 1157
HindII GTYRAC 1 cut(s) 1157
HpaII CCGG 4 cut(s) 251, 1086, 1485, 1554
HphI GGTGA 3 cut(s) 140, 377, 1012
Hpy166II GTNNAC 4 cut(s) 147, 650, 1157, 1373
Hpy188I TCNGA 5 cut(s) 823, 951, 1067, 1075, 1175
Hpy188III TCNNGA 9 cut(s) 188, 229, 572, 638, 680, 686, 1118, 1277, 1399
Hpy8I GTNNAC 4 cut(s) 147, 650, 1157, 1373
Hpy99I CGWCG 4 cut(s) 56, 1158, 1737, 1742
HpyAV CCTTC 7 cut(s) 130, 262, 277, 683, 946, 1170, 1540
HpyCH4III ACNGT 4 cut(s) 151, 944, 1142, 1477
HpyCH4V TGCA 9 cut(s) 392, 437, 778, 828, 913, 929, 1216, 1656, 1671
HpyF10VI GCNNNNNNNGC 7 cut(s) 241, 284, 485, 926, 986, 1356, 1504
HpyF3I CTNAG 3 cut(s) 320, 1064, 1172
HspAI GCGC 5 cut(s) 968, 1083, 1127, 1289, 1505
KpnI GGTACC 1 cut(s) 257
KspI CCGCGG 1 cut(s) 1586
Kzo9I GATC 5 cut(s) 109, 543, 682, 1294, 1336
LguI GCTCTTC 1 cut(s) 1275
LmnI GCTCC 4 cut(s) 253, 631, 751, 1261
Lsp1109I GCAGC 3 cut(s) 299, 741, 1369
LweI GCATC 3 cut(s) 446, 607, 907
MaeI CTAG 7 cut(s) 174, 216, 741, 923, 977, 1379, 1745
MaeIII GTNAC 3 cut(s) 713, 938, 1479
MalI GATC 5 cut(s) 111, 545, 684, 1296, 1338
MboI GATC 5 cut(s) 109, 543, 682, 1294, 1336
MflI RGATCY 2 cut(s) 543, 1294
MhlI GDGCHC 4 cut(s) 1097, 1208, 1266, 1500
MlsI TGGCCA 1 cut(s) 999
MluCI AATT 6 cut(s) 183, 535, 576, 958, 1012, 1514
MluNI TGGCCA 1 cut(s) 999
MlyI GAGTC 4 cut(s) 100, 583, 1062, 1174
MmeI TCCRAC 1 cut(s) 42
Mox20I TGGCCA 1 cut(s) 999
Mph1103I ATGCAT 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 1016
MscI TGGCCA 1 cut(s) 999
MseI TTAA 2 cut(s) 503, 890
MslI CAYNNNNRTG 1 cut(s) 1475
Msp20I TGGCCA 1 cut(s) 999
MspA1I CMGCKG 1 cut(s) 1585
MspI CCGG 4 cut(s) 251, 1086, 1485, 1554
MspR9I CCNGG 8 cut(s) 258, 280, 722, 863, 878, 1185, 1485, 1640
MvaI CCWGG 7 cut(s) 258, 280, 722, 863, 878, 1185, 1640
MvnI CGCG 8 cut(s) 1083, 1105, 1291, 1313, 1359, 1505, 1585, 1737
MwoI GCNNNNNNNGC 7 cut(s) 241, 284, 485, 926, 986, 1356, 1504
NciI CCSGG 1 cut(s) 1485
NdeII GATC 5 cut(s) 109, 543, 682, 1294, 1336
NheI GCTAGC 1 cut(s) 1378
NlaIV GGNNCC 2 cut(s) 255, 1095
NmuCI GTSAC 1 cut(s) 713
NsiI ATGCAT 1 cut(s) 439
PagI TCATGA 1 cut(s) 571
PciSI GCTCTTC 1 cut(s) 1275
PcsI WCGNNNNNNNCGW 2 cut(s) 1282, 1734
PdmI GAANNNNTTC 1 cut(s) 1016
PfeI GAWTC 6 cut(s) 73, 197, 377, 818, 1431, 1520
PflMI CCANNNNNTGG 2 cut(s) 362, 656
PfoI TCCNGGA 2 cut(s) 1183, 1638
PinAI ACCGGT 1 cut(s) 1553
PkrI GCNGC 4 cut(s) 289, 756, 1315, 1384
PleI GAGTC 4 cut(s) 99, 583, 1062, 1174
PpsI GAGTC 4 cut(s) 99, 583, 1062, 1174
Psp124BI GAGCTC 1 cut(s) 1266
Psp6I CCWGG 7 cut(s) 256, 278, 720, 861, 876, 1183, 1638
PspFI CCCAGC 2 cut(s) 660, 1200
PspGI CCWGG 7 cut(s) 256, 278, 720, 861, 876, 1183, 1638
PspN4I GGNNCC 2 cut(s) 255, 1095
PspOMI GGGCCC 1 cut(s) 1093
PspPI GGNCC 9 cut(s) 647, 865, 1075, 1093, 1094, 1239, 1546, 1694, 1717
PsuI RGATCY 2 cut(s) 543, 1294
RsaI GTAC 3 cut(s) 255, 840, 875
RsaNI GTAC 3 cut(s) 254, 839, 874
RseI CAYNNNNRTG 1 cut(s) 1475
SacI GAGCTC 1 cut(s) 1266
SacII CCGCGG 1 cut(s) 1586
SalI GTCGAC 1 cut(s) 1155
SapI GCTCTTC 1 cut(s) 1275
SaqAI TTAA 2 cut(s) 503, 890
SatI GCNGC 4 cut(s) 288, 755, 1314, 1383
Sau3AI GATC 5 cut(s) 109, 543, 682, 1294, 1336
Sau96I GGNCC 9 cut(s) 647, 865, 1075, 1093, 1094, 1239, 1546, 1694, 1717
SchI GAGTC 4 cut(s) 100, 583, 1062, 1174
ScrFI CCNGG 8 cut(s) 258, 280, 722, 863, 878, 1185, 1485, 1640
SduI GDGCHC 4 cut(s) 1097, 1208, 1266, 1500
SfaNI GCATC 3 cut(s) 446, 607, 907
Sfr303I CCGCGG 1 cut(s) 1586
SgrBI CCGCGG 1 cut(s) 1586
SinI GGWCC 4 cut(s) 647, 865, 1075, 1694
SmiMI CAYNNNNRTG 1 cut(s) 1475
SmlI CTYRAG 1 cut(s) 898
SmoI CTYRAG 1 cut(s) 898
Sse9I AATT 6 cut(s) 183, 535, 576, 958, 1012, 1514
SspI AATATT 3 cut(s) 298, 1027, 1646
SspMI CTAG 7 cut(s) 174, 216, 741, 923, 977, 1379, 1745
SstI GAGCTC 1 cut(s) 1266
StyD4I CCNGG 8 cut(s) 256, 278, 720, 861, 876, 1183, 1483, 1638
StyI CCWWGG 1 cut(s) 1697
TaaI ACNGT 4 cut(s) 151, 944, 1142, 1477
TaqI TCGA 2 cut(s) 1156, 1429
TaqII GACCGA 1 cut(s) 1424
TasI AATT 6 cut(s) 183, 535, 576, 958, 1012, 1514
TatI WGTACW 1 cut(s) 838
TauI GCSGC 1 cut(s) 1316
TfiI GAWTC 6 cut(s) 73, 197, 377, 818, 1431, 1520
Tru1I TTAA 2 cut(s) 503, 890
Tru9I TTAA 2 cut(s) 503, 890
TscAI CASTG 3 cut(s) 1042, 1380, 1696
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 3 cut(s) 287, 754, 1382
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 6 cut(s) 83, 395, 567, 588, 1102, 1651
TspGWI ACGGA 4 cut(s) 40, 556, 701, 1142
TspRI CASTG 3 cut(s) 1042, 1380, 1696
Van91I CCANNNNNTGG 2 cut(s) 362, 656
VpaK11BI GGWCC 4 cut(s) 647, 865, 1075, 1694
XagI CCTNNNNNAGG 1 cut(s) 890
XapI RAATTY 3 cut(s) 183, 535, 1012
XcmI CCANNNNNNNNNTGG 1 cut(s) 657
XmiI GTMKAC 1 cut(s) 1156
XmnI GAANNNNTTC 1 cut(s) 1016
XspI CTAG 7 cut(s) 174, 216, 741, 923, 977, 1379, 1745
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.