Rmu_sc0001063.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001063.1
OG0000591
Physical Location & Seq
Forward (+)
7886 .. 8956
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001063.1_g000001.1.cds

Sequence Viewer

Length: 936 bp
atgaattgttacctgcttccccaaaaccttattcaggaacttcatcagttatgtgcccaattctggtgggggagtacgaacgagaagaaggggatgcattggcgggcatgggatgatttgtgtaaacctaaaagtgagggaggcatgggttttcaccatctatttgctttcaacctggctatgcttgccaagcaaggatggagattaatccaaagccctgattctttgattggccagttgttcaaagccctttattttccacctagctattttttggaagctacattgggtacacaaccttcatatgcttggagaagcattttgcatgggagagatatactccgagcgggtatccaacgtcatattgggaatggtttgtctactaacatatggacaaacccatggttgtgtggggaggaactgggtgttcatttttctgaccgtgttacatatgtagctgaccttttcttgtccccaggtctgtggaattctacttttctttcagaattgtttcctgctcatattgttcaaaagatccttgatattccgcttagccgccggaatcatgccgatagatggatttggggtggagacaaaaaaggccggttcacagtcaaattcgtctaccatgtggctcggaacagagttcttgctaatcattcttctgcactaaatccaagtgcttctgtttggctccaattttgttgcagctggtcaacagtctcttttcttgcgcggccgtgccagcactgttctggtgcggtcgtcggggatcgagcagagcgagaaccactgggaagtgaggagaacttgctaaagcgtgactttagcttggctgggttgctagggcgttacccttgcttggctggttctgtaaccgttgtggtcgcggcactaccgtcggctcccgagaagactaggaccgaagtacgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

311

Amino Acids

35.14

Weight (kDa)

9.08

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 21
AccBSI CCGCTC 1 cut(s) 347
AccI GTMKAC 2 cut(s) 380, 624
AccII CGCG 2 cut(s) 736, 890
AciI CCGC 7 cut(s) 103, 347, 548, 556, 736, 761, 890
AclWI GGATC 2 cut(s) 529, 780
AcoI YGGCCR 2 cut(s) 232, 737
AcsI RAATTY 2 cut(s) 487, 617
AfaI GTAC 3 cut(s) 76, 292, 930
AfiI CCNNNNNNNGG 4 cut(s) 34, 63, 576, 862
AgsI TTSAA 3 cut(s) 172, 244, 530
AjnI CCWGG 2 cut(s) 174, 475
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 5 cut(s) 267, 281, 458, 711, 831
AluI AGCT 5 cut(s) 267, 281, 458, 711, 831
Alw26I GTCTC 2 cut(s) 585, 727
AlwI GGATC 2 cut(s) 529, 780
Ama87I CYCGRG 1 cut(s) 908
AoxI GGCC 3 cut(s) 232, 601, 737
ApeKI GCWGC 1 cut(s) 708
ApoI RAATTY 2 cut(s) 487, 617
AseI ATTAAT 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 510
AspLEI GCGC 1 cut(s) 736
AspS9I GGNCC 1 cut(s) 921
AsuHPI GGTGA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 908
AvaII GGWCC 1 cut(s) 921
BaeGI GKGCMC 1 cut(s) 58
BalI TGGCCA 1 cut(s) 234
BarI GAAGNNNNNNTAC 2 cut(s) 283, 315
BbsI GAAGAC 1 cut(s) 920
BbvI GCAGC 1 cut(s) 720
BccI CCATC 3 cut(s) 165, 192, 570
BceAI ACGGC 1 cut(s) 724
BcgI CGANNNNNNTGC 2 cut(s) 882, 916
BciT130I CCWGG 2 cut(s) 176, 477
BciVI GTATCC 1 cut(s) 362
BcoDI GTCTC 2 cut(s) 585, 727
BfaI CTAG 3 cut(s) 264, 845, 918
BfuAI ACCTGC 1 cut(s) 21
BfuI GTATCC 1 cut(s) 362
BisI GCNGC 4 cut(s) 556, 709, 737, 891
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 4 cut(s) 557, 710, 738, 892
Bme1390I CCNGG 2 cut(s) 176, 477
Bme18I GGWCC 1 cut(s) 921
BmeT110I CYCGRG 1 cut(s) 908
BmgT120I GGNCC 1 cut(s) 921
BmiI GGNNCC 2 cut(s) 695, 906
BmrFI CCNGG 2 cut(s) 176, 477
BmrI ACTGGG 2 cut(s) 431, 803
BmsI GCATC 1 cut(s) 84
BmuI ACTGGG 2 cut(s) 431, 803
BpiI GAAGAC 1 cut(s) 920
BplI GAGNNNNNCTC 2 cut(s) 324, 356
Bpu1102I GCTNAGC 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 401, 475
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 63, 576, 862
Bse118I RCCGGY 1 cut(s) 603
Bse1I ACTGG 3 cut(s) 235, 426, 798
BseBI CCWGG 2 cut(s) 176, 477
BseDI CCNNGG 2 cut(s) 401, 475
BseGI GGATG 3 cut(s) 99, 118, 203
BseLI CCNNNNNNNGG 4 cut(s) 34, 63, 576, 862
BseNI ACTGG 3 cut(s) 235, 426, 798
BseRI GAGGAG 1 cut(s) 818
BseSI GKGCMC 1 cut(s) 58
BseX3I CGGCCG 1 cut(s) 737
BseXI GCAGC 1 cut(s) 720
BseYI CCCAGC 1 cut(s) 836
BsgI GTGCAG 1 cut(s) 651
Bsh1236I CGCG 2 cut(s) 736, 890
Bsh1285I CGRYCG 2 cut(s) 740, 765
BshFI GGCC 3 cut(s) 234, 603, 739
BsiEI CGRYCG 2 cut(s) 740, 765
BsiHKCI CYCGRG 1 cut(s) 908
BsiSI CCGG 2 cut(s) 559, 604
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 4 cut(s) 34, 63, 576, 862
BsmAI GTCTC 2 cut(s) 585, 727
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 3 cut(s) 234, 603, 739
BsoBI CYCGRG 1 cut(s) 908
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 534, 772
Bsp1720I GCTNAGC 1 cut(s) 551
Bsp19I CCATGG 1 cut(s) 401
BspACI CCGC 7 cut(s) 103, 347, 548, 556, 736, 761, 890
BspANI GGCC 3 cut(s) 234, 603, 739
BspFNI CGCG 2 cut(s) 736, 890
BspLI GGNNCC 2 cut(s) 695, 906
BspMI ACCTGC 1 cut(s) 21
BspPI GGATC 2 cut(s) 529, 780
BsrBI CCGCTC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 603
BsrI ACTGG 3 cut(s) 235, 426, 798
BssAI RCCGGY 1 cut(s) 603
BssECI CCNNGG 2 cut(s) 401, 475
BssMI GATC 2 cut(s) 534, 772
BssT1I CCWWGG 1 cut(s) 401
Bst2UI CCWGG 2 cut(s) 176, 477
Bst4CI ACNGT 6 cut(s) 443, 613, 721, 752, 880, 900
BstC8I GCNNGC 3 cut(s) 105, 186, 746
BstDEI CTNAG 1 cut(s) 551
BstDSI CCRYGG 1 cut(s) 401
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 3 cut(s) 99, 118, 203
BstFNI CGCG 2 cut(s) 736, 890
BstHHI GCGC 1 cut(s) 736
BstKTI GATC 2 cut(s) 537, 775
BstMAI GTCTC 2 cut(s) 585, 727
BstMBI GATC 2 cut(s) 534, 772
BstMCI CGRYCG 2 cut(s) 740, 765
BstMWI GCNNNNNNNGC 3 cut(s) 185, 190, 745
BstNI CCWGG 2 cut(s) 176, 477
BstSCI CCNGG 2 cut(s) 174, 475
BstSLI GKGCMC 1 cut(s) 58
BstUI CGCG 2 cut(s) 736, 890
BstV1I GCAGC 1 cut(s) 720
BstV2I GAAGAC 1 cut(s) 920
BstX2I RGATCY 1 cut(s) 534
BstXI CCANNNNNNTGG 1 cut(s) 483
BstYI RGATCY 1 cut(s) 534
BstZI CGGCCG 1 cut(s) 737
BsuI GTATCC 1 cut(s) 362
BsuRI GGCC 3 cut(s) 234, 603, 739
BtgI CCRYGG 1 cut(s) 401
BtsCI GGATG 3 cut(s) 99, 118, 203
BtsIMutI CAGTG 2 cut(s) 748, 791
BveI ACCTGC 1 cut(s) 21
Cac8I GCNNGC 3 cut(s) 105, 186, 746
CfoI GCGC 1 cut(s) 736
Cfr10I RCCGGY 1 cut(s) 603
Cfr13I GGNCC 1 cut(s) 921
Csp6I GTAC 3 cut(s) 75, 291, 929
CspCI CAANNNNNGTGG 2 cut(s) 47, 82
CviAII CATG 6 cut(s) 108, 145, 326, 402, 566, 629
CviQI GTAC 3 cut(s) 75, 291, 929
DdeI CTNAG 1 cut(s) 551
DpnI GATC 2 cut(s) 536, 774
DpnII GATC 2 cut(s) 534, 772
EaeI YGGCCR 2 cut(s) 232, 737
EagI CGGCCG 1 cut(s) 737
EclXI CGGCCG 1 cut(s) 737
Eco130I CCWWGG 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 921
Eco52I CGGCCG 1 cut(s) 737
Eco88I CYCGRG 1 cut(s) 908
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoRI GAATTC 1 cut(s) 487
EcoRII CCWGG 2 cut(s) 174, 475
EcoT14I CCWWGG 1 cut(s) 401
EcoT22I ATGCAT 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 6 cut(s) 111, 148, 329, 405, 569, 632
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FaqI GGGAC 1 cut(s) 457
FatI CATG 6 cut(s) 107, 144, 325, 401, 565, 628
FauI CCCGC 2 cut(s) 96, 340
FauNDI CATATG 3 cut(s) 304, 389, 451
FblI GTMKAC 2 cut(s) 380, 624
Fnu4HI GCNGC 4 cut(s) 556, 709, 737, 891
FokI GGATG 3 cut(s) 106, 125, 210
Fsp4HI GCNGC 4 cut(s) 556, 709, 737, 891
FspBI CTAG 3 cut(s) 264, 845, 918
GlaI GCGC 1 cut(s) 735
GluI GCNGC 4 cut(s) 556, 709, 737, 891
GsaI CCCAGC 1 cut(s) 840
HaeIII GGCC 3 cut(s) 234, 603, 739
HapII CCGG 2 cut(s) 559, 604
HhaI GCGC 1 cut(s) 736
Hin1II CATG 6 cut(s) 111, 148, 329, 405, 569, 632
Hin6I GCGC 1 cut(s) 734
HinP1I GCGC 1 cut(s) 734
HincII GTYRAC 1 cut(s) 717
HindII GTYRAC 1 cut(s) 717
HinfI GANTC 2 cut(s) 221, 562
HpaII CCGG 2 cut(s) 559, 604
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 6 cut(s) 125, 293, 381, 609, 625, 717
Hpy188I TCNGA 4 cut(s) 344, 439, 505, 639
Hpy188III TCNNGA 2 cut(s) 35, 908
Hpy8I GTNNAC 6 cut(s) 125, 293, 381, 609, 625, 717
Hpy99I CGWCG 2 cut(s) 770, 904
HpyAV CCTTC 2 cut(s) 82, 309
HpyCH4III ACNGT 6 cut(s) 443, 613, 721, 752, 880, 900
HpyCH4IV ACGT 2 cut(s) 358, 931
HpyCH4V TGCA 4 cut(s) 97, 325, 668, 708
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 190, 745
HpyF3I CTNAG 1 cut(s) 551
HpySE526I ACGT 2 cut(s) 358, 931
Hsp92II CATG 6 cut(s) 111, 148, 329, 405, 569, 632
HspAI GCGC 1 cut(s) 734
Kzo9I GATC 2 cut(s) 534, 772
LmnI GCTCC 2 cut(s) 699, 910
Lsp1109I GCAGC 1 cut(s) 720
LweI GCATC 1 cut(s) 84
MaeI CTAG 3 cut(s) 264, 845, 918
MaeII ACGT 2 cut(s) 358, 931
MaeIII GTNAC 5 cut(s) 8, 445, 821, 851, 874
MalI GATC 2 cut(s) 536, 774
MbiI CCGCTC 1 cut(s) 347
MboI GATC 2 cut(s) 534, 772
MboII GAAGA 3 cut(s) 97, 654, 925
MflI RGATCY 1 cut(s) 534
MhlI GDGCHC 1 cut(s) 58
MlsI TGGCCA 1 cut(s) 234
MluCI AATT 6 cut(s) 4, 59, 487, 506, 617, 698
MluNI TGGCCA 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 4 cut(s) 130, 134, 409, 796
Mox20I TGGCCA 1 cut(s) 234
Mph1103I ATGCAT 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 510
MscI TGGCCA 1 cut(s) 234
MseI TTAA 1 cut(s) 206
MslI CAYNNNNRTG 1 cut(s) 406
Msp20I TGGCCA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 711
MspI CCGG 2 cut(s) 559, 604
MspR9I CCNGG 2 cut(s) 176, 477
MvaI CCWGG 2 cut(s) 176, 477
MvnI CGCG 2 cut(s) 736, 890
MwoI GCNNNNNNNGC 3 cut(s) 185, 190, 745
NcoI CCATGG 1 cut(s) 401
NdeI CATATG 3 cut(s) 304, 389, 451
NdeII GATC 2 cut(s) 534, 772
NlaIII CATG 6 cut(s) 111, 148, 329, 405, 569, 632
NlaIV GGNNCC 2 cut(s) 695, 906
NmuCI GTSAC 1 cut(s) 821
NsiI ATGCAT 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 781
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 2 cut(s) 221, 562
PkrI GCNGC 4 cut(s) 557, 710, 738, 892
PshBI ATTAAT 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 174, 475
PspFI CCCAGC 1 cut(s) 836
PspGI CCWGG 2 cut(s) 174, 475
PspN4I GGNNCC 2 cut(s) 695, 906
PspPI GGNCC 1 cut(s) 921
PsuI RGATCY 1 cut(s) 534
PvuII CAGCTG 1 cut(s) 711
RsaI GTAC 3 cut(s) 76, 292, 930
RsaNI GTAC 3 cut(s) 75, 291, 929
RseI CAYNNNNRTG 1 cut(s) 406
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 4 cut(s) 556, 709, 737, 891
Sau3AI GATC 2 cut(s) 534, 772
Sau96I GGNCC 1 cut(s) 921
ScrFI CCNGG 2 cut(s) 176, 477
SduI GDGCHC 1 cut(s) 58
SfaNI GCATC 1 cut(s) 84
SinI GGWCC 1 cut(s) 921
SmiMI CAYNNNNRTG 1 cut(s) 406
Sse9I AATT 6 cut(s) 4, 59, 487, 506, 617, 698
SsiI CCGC 7 cut(s) 103, 347, 548, 556, 736, 761, 890
SspMI CTAG 3 cut(s) 264, 845, 918
StyD4I CCNGG 2 cut(s) 174, 475
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 6 cut(s) 443, 613, 721, 752, 880, 900
TaiI ACGT 2 cut(s) 361, 934
TaqI TCGA 1 cut(s) 775
TasI AATT 6 cut(s) 4, 59, 487, 506, 617, 698
TauI GCSGC 3 cut(s) 558, 739, 893
TfiI GAWTC 2 cut(s) 221, 562
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 2 cut(s) 755, 798
TseFI GTSAC 1 cut(s) 821
TseI GCWGC 1 cut(s) 708
Tsp45I GTSAC 1 cut(s) 821
TspDTI ATGAA 4 cut(s) 17, 32, 291, 419
TspRI CASTG 2 cut(s) 755, 798
VpaK11BI GGWCC 1 cut(s) 921
VspI ATTAAT 1 cut(s) 206
XagI CCTNNNNNAGG 1 cut(s) 32
XapI RAATTY 2 cut(s) 487, 617
XcmI CCANNNNNNNNNTGG 2 cut(s) 362, 752
XmiI GTMKAC 2 cut(s) 380, 624
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 3 cut(s) 264, 845, 918
Zsp2I ATGCAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.