Rroxscaffold_3G00233230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000591
Physical Location & Seq
Reverse (-)
19161767 .. 19162618
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233230.1

Sequence Viewer

Length: 165 bp
ATGCTTGGGCTCCTCTTTGAATCTTGTGGAATTGATGAAGCTTTGTGGTGGAATAGTGAAGAAAATATAGAAAATGGGTTGGAGGTGGGTGGTTCGGTGTTAGAGGAAAAAAAAAAGGATCTGGGGAGAGGATTGGGGTCTGCGGCAACAGAGAAAAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

5.88

Weight (kDa)

4.48

Isoelectric Point (pI)

56.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AclWI GGATC 1 cut(s) 126
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AlwI GGATC 1 cut(s) 126
BanII GRGCYC 1 cut(s) 12
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 1 cut(s) 126
BssMI GATC 1 cut(s) 118
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
CviJI RGCY 2 cut(s) 10, 41
CviKI_1 RGCY 2 cut(s) 10, 41
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 12
FaiI YATR 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 144
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 1 cut(s) 20
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 1 cut(s) 107
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 71
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 4 cut(s) 23, 76, 97, 122
NdeII GATC 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 118
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 118
SduI GDGCHC 1 cut(s) 12
SetI ASST 2 cut(s) 43, 87
SgeI CNNG 3 cut(s) 17, 36, 134
Sse9I AATT 1 cut(s) 30
SsiI CCGC 1 cut(s) 143
TasI AATT 1 cut(s) 30
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.