FvH4_6g30441

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000591
Physical Location & Seq
Forward (+)
23551281 .. 23552448
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30441.t1

Sequence Viewer

Length: 756 bp
ATGGCAAAAGGGTTGTGGAACCCTGGCCGGGCCTGCTTGGAACCAGTCCGTCTTATGCATGGCGGAGTATTTTACAAGGAAGAGATATCCTGCAAGCGGGTAGTGTATTTTGCATTGGCTCTTCCGGTTAGTATTCATAATTATGATGACAGATGGATTTGGAGTGAAGATTGGAGAGGTCAATTCTCTGTTAAATCTGCATATCATGTAGCCCGCAGGAGAGTTCTACAGGAGGATGAGACAGGACCGAATCCTAGTGCTAGTCTTTGGAAAAAAATTTGGAAAGCCCATGTGCTTGGGAAAGTAAACATATGTGCTTGGAAAGTTGCCTCCAATATTCTTCCTACACAGAATAGGCTTAGTCAACGTGTAGCAGACTGGTTAGTTCCATTTACTCAACCTAGTACTTCATTCGCTACTGTGTTGATAATTATTTGGGCTATCTGGATGAACCGTAATATTAAGATTTGGGAGAATGAGGCCAAACCAACATCTGAGGTTGGTCCTTCTATTTTGGGTTGGTATGTTGAATACCGTGAGGTACACGTCAATAATAATGTGCTTATTCAGGTGCCCAAAGTTGGTTGGCTGAAACTTCCTAGTGGAATGGTCAAACTTAATGTTGATGCTGCTTTCGATAACCCAAATAGTTTAACAAGAGTTAGGGGTGTTTTTCGGGATGCTAATGGAACCTTTCTTAGGGGTTTTCGGCAGTCTTTACCTCATGCAGCCTCTATACAGCATGCAAAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

252

Amino Acids

28.73

Weight (kDa)

9.89

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 62 - 124 9.5e-07 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 571
AciI CCGC 3 cut(s) 63, 97, 214
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 1 cut(s) 276
AfaI GTAC 2 cut(s) 406, 543
AfiI CCNNNNNNNGG 4 cut(s) 28, 96, 581, 699
AflIII ACRYGT 2 cut(s) 367, 544
AgsI TTSAA 1 cut(s) 530
AjiI CACGTC 1 cut(s) 547
AjnI CCWGG 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 233
AoxI GGCC 3 cut(s) 25, 30, 480
ApeKI GCWGC 2 cut(s) 629, 728
ApoI RAATTY 1 cut(s) 276
AspS9I GGNCC 3 cut(s) 30, 245, 503
AsuC2I CCSGG 1 cut(s) 29
AvaII GGWCC 2 cut(s) 245, 503
BaeGI GKGCMC 1 cut(s) 576
BanI GGYRCC 1 cut(s) 571
BbvI GCAGC 2 cut(s) 616, 740
BccI CCATC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 24
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 4 cut(s) 255, 261, 402, 600
BfmI CTRYAG 1 cut(s) 227
BisI GCNGC 2 cut(s) 630, 729
BlsI GCNGC 2 cut(s) 631, 730
BmcAI AGTACT 1 cut(s) 406
Bme1390I CCNGG 2 cut(s) 24, 29
Bme18I GGWCC 2 cut(s) 245, 503
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 3 cut(s) 30, 245, 503
BmiI GGNNCC 4 cut(s) 20, 42, 573, 691
BmrFI CCNGG 2 cut(s) 24, 29
BmsI GCATC 2 cut(s) 616, 670
BpuMI CCSGG 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 96, 581, 699
Bse1I ACTGG 2 cut(s) 44, 383
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 3 cut(s) 241, 453, 685
BseLI CCNNNNNNNGG 4 cut(s) 28, 96, 581, 699
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 44, 383
BseSI GKGCMC 1 cut(s) 576
BseXI GCAGC 2 cut(s) 616, 740
BshFI GGCC 3 cut(s) 27, 32, 482
BshNI GGYRCC 1 cut(s) 571
BsiSI CCGG 2 cut(s) 28, 125
BslI CCNNNNNNNGG 4 cut(s) 28, 96, 581, 699
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 3 cut(s) 27, 32, 482
Bsp1286I GDGCHC 1 cut(s) 576
BspACI CCGC 3 cut(s) 63, 97, 214
BspANI GGCC 3 cut(s) 27, 32, 482
BspCNI CTCAG 1 cut(s) 487
BspLI GGNNCC 4 cut(s) 20, 42, 573, 691
BspQI GCTCTTC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 571
BsrI ACTGG 2 cut(s) 44, 383
BssECI CCNNGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 3 cut(s) 421, 455, 536
Bst6I CTCTTC 2 cut(s) 75, 126
BstC8I GCNNGC 4 cut(s) 34, 95, 214, 744
BstDEI CTNAG 3 cut(s) 359, 495, 698
BstENI CCTNNNNNAGG 1 cut(s) 697
BstF5I GGATG 3 cut(s) 241, 453, 685
BstMAI GTCTC 1 cut(s) 233
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 746
BstSCI CCNGG 2 cut(s) 22, 27
BstSFI CTRYAG 1 cut(s) 227
BstSLI GKGCMC 1 cut(s) 576
BstV1I GCAGC 2 cut(s) 616, 740
BstXI CCANNNNNNTGG 1 cut(s) 296
BsuRI GGCC 3 cut(s) 27, 32, 482
BtrI CACGTC 1 cut(s) 547
BtsCI GGATG 3 cut(s) 241, 453, 685
Cac8I GCNNGC 4 cut(s) 34, 95, 214, 744
Cfr13I GGNCC 3 cut(s) 30, 245, 503
Csp6I GTAC 2 cut(s) 405, 542
CviAII CATG 5 cut(s) 59, 206, 290, 725, 743
CviQI GTAC 2 cut(s) 405, 542
DdeI CTNAG 3 cut(s) 359, 495, 698
EaeI YGGCCR 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 75, 126
EarI CTCTTC 2 cut(s) 75, 126
EciI GGCGGA 1 cut(s) 78
Eco32I GATATC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 245, 503
EcoNI CCTNNNNNAGG 1 cut(s) 697
EcoRII CCWGG 1 cut(s) 22
EcoRV GATATC 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 60
FaeI CATG 5 cut(s) 62, 209, 293, 728, 746
FatI CATG 5 cut(s) 58, 205, 289, 724, 742
FauI CCCGC 2 cut(s) 90, 221
FauNDI CATATG 1 cut(s) 311
Fnu4HI GCNGC 2 cut(s) 630, 729
FokI GGATG 3 cut(s) 248, 460, 692
Fsp4HI GCNGC 2 cut(s) 630, 729
FspBI CTAG 4 cut(s) 255, 261, 402, 600
GluI GCNGC 2 cut(s) 630, 729
HaeIII GGCC 3 cut(s) 27, 32, 482
HapII CCGG 2 cut(s) 28, 125
Hin1II CATG 5 cut(s) 62, 209, 293, 728, 746
HincII GTYRAC 1 cut(s) 365
HindII GTYRAC 1 cut(s) 365
HinfI GANTC 1 cut(s) 250
HpaII CCGG 2 cut(s) 28, 125
Hpy166II GTNNAC 3 cut(s) 307, 365, 544
Hpy188I TCNGA 1 cut(s) 496
Hpy188III TCNNGA 2 cut(s) 445, 677
Hpy8I GTNNAC 3 cut(s) 307, 365, 544
HpyAV CCTTC 1 cut(s) 516
HpyCH4III ACNGT 3 cut(s) 421, 455, 536
HpyCH4IV ACGT 2 cut(s) 367, 546
HpyCH4V TGCA 6 cut(s) 58, 93, 113, 200, 728, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 3 cut(s) 359, 495, 698
HpySE526I ACGT 2 cut(s) 367, 546
Hsp92II CATG 5 cut(s) 62, 209, 293, 728, 746
LguI GCTCTTC 1 cut(s) 126
Lsp1109I GCAGC 2 cut(s) 616, 740
LweI GCATC 2 cut(s) 616, 670
MaeI CTAG 4 cut(s) 255, 261, 402, 600
MaeII ACGT 2 cut(s) 367, 546
MboII GAAGA 4 cut(s) 92, 113, 179, 332
MhlI GDGCHC 1 cut(s) 576
MluCI AATT 4 cut(s) 139, 182, 276, 429
MnlI CCTC 8 cut(s) 170, 226, 340, 472, 490, 532, 732, 742
Mph1103I ATGCAT 1 cut(s) 60
MseI TTAA 4 cut(s) 192, 462, 618, 653
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 2 cut(s) 28, 125
MspR9I CCNGG 2 cut(s) 24, 29
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 33
NciI CCSGG 1 cut(s) 29
NdeI CATATG 1 cut(s) 311
NlaIII CATG 5 cut(s) 62, 209, 293, 728, 746
NlaIV GGNNCC 4 cut(s) 20, 42, 573, 691
NsiI ATGCAT 1 cut(s) 60
NspI RCATGY 1 cut(s) 746
PaeI GCATGC 1 cut(s) 746
PciSI GCTCTTC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 2 cut(s) 631, 730
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 4 cut(s) 20, 42, 573, 691
PspPI GGNCC 3 cut(s) 30, 245, 503
RsaI GTAC 2 cut(s) 406, 543
RsaNI GTAC 2 cut(s) 405, 542
RseI CAYNNNNRTG 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 4 cut(s) 192, 462, 618, 653
SatI GCNGC 2 cut(s) 630, 729
Sau96I GGNCC 3 cut(s) 30, 245, 503
ScaI AGTACT 1 cut(s) 406
ScrFI CCNGG 2 cut(s) 24, 29
SduI GDGCHC 1 cut(s) 576
SetI ASST 9 cut(s) 181, 370, 403, 501, 543, 549, 573, 695, 724
SfaNI GCATC 2 cut(s) 616, 670
SfcI CTRYAG 1 cut(s) 227
SinI GGWCC 2 cut(s) 245, 503
SmiMI CAYNNNNRTG 1 cut(s) 141
SphI GCATGC 1 cut(s) 746
Sse9I AATT 4 cut(s) 139, 182, 276, 429
SsiI CCGC 3 cut(s) 63, 97, 214
SspI AATATT 2 cut(s) 337, 460
SspMI CTAG 4 cut(s) 255, 261, 402, 600
StyD4I CCNGG 2 cut(s) 22, 27
TaaI ACNGT 3 cut(s) 421, 455, 536
TaiI ACGT 2 cut(s) 370, 549
TaqI TCGA 1 cut(s) 636
TaqII GACCGA 1 cut(s) 262
TasI AATT 4 cut(s) 139, 182, 276, 429
TatI WGTACW 1 cut(s) 404
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 4 cut(s) 192, 462, 618, 653
Tru9I TTAA 4 cut(s) 192, 462, 618, 653
TseI GCWGC 2 cut(s) 629, 728
TspDTI ATGAA 3 cut(s) 125, 399, 464
TspGWI ACGGA 1 cut(s) 38
VpaK11BI GGWCC 2 cut(s) 245, 503
XagI CCTNNNNNAGG 1 cut(s) 697
XapI RAATTY 1 cut(s) 276
XceI RCATGY 1 cut(s) 746
XspI CTAG 4 cut(s) 255, 261, 402, 600
ZrmI AGTACT 1 cut(s) 406
Zsp2I ATGCAT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.