Rmu_sc0007222.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007222.1
OG0000591
Physical Location & Seq
Reverse (-)
1127 .. 1696
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007222.1_g000002.1.cds

Sequence Viewer

Length: 570 bp
atgggtggaatggaatttcgtcatctgtttgcttttaatctggctatgttagctaaacaaggatggcgtctaattcaagatcctgagtctttggttggtaggctgttgaaggcaatctattttccccattgtaatttttgggacgcggaggttggttcagcttcatcctatgcttggcgtagcattctgaatggtagagatattctgcaagccggtattcggcatcatattggggatggtaagtccaccaacgtgtggactgatccttggttgattggggatgatttgacttctttctacactcctagaattaatatggtttcagaccctattttatctccaggtgtttggaaccaggctttactacatgagctcttcccattacatattacacaaaagatcttggctctcccgcttagtaatcgtatgtatgatgatcggtggatttggtctggtgataagaagggaggcttcactgtcaaatccgcctaccatatagcacaggatagagttttgggtgagaattccagcatgcctaaccctagtgccgagctttggaaccggatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

189

Amino Acids

21.54

Weight (kDa)

7.06

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 255
AccII CGCG 1 cut(s) 146
AciI CCGC 3 cut(s) 146, 413, 486
AclWI GGATC 2 cut(s) 74, 257
AcsI RAATTY 2 cut(s) 14, 523
AcyI GRCGYC 1 cut(s) 67
AfiI CCNNNNNNNGG 4 cut(s) 174, 219, 255, 555
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 2 cut(s) 77, 109
AjnI CCWGG 2 cut(s) 340, 354
AleI CACNNNNGTG 1 cut(s) 251
AluBI AGCT 4 cut(s) 53, 161, 373, 553
AluI AGCT 4 cut(s) 53, 161, 373, 553
Alw21I GWGCWC 1 cut(s) 375
AlwI GGATC 2 cut(s) 74, 257
ApoI RAATTY 2 cut(s) 14, 523
AseI ATTAAT 1 cut(s) 312
AsuHPI GGTGA 2 cut(s) 467, 530
BanII GRGCYC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 375
BccI CCATC 2 cut(s) 57, 230
BciT130I CCWGG 2 cut(s) 342, 356
BfaI CTAG 2 cut(s) 306, 543
BglII AGATCT 1 cut(s) 399
Bme1390I CCNGG 2 cut(s) 342, 356
BmiI GGNNCC 2 cut(s) 353, 560
BmrFI CCNGG 2 cut(s) 342, 356
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 266
BsaWI WCCGGW 1 cut(s) 561
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 219, 255, 555
Bse118I RCCGGY 1 cut(s) 212
BseBI CCWGG 2 cut(s) 342, 356
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 4 cut(s) 68, 164, 241, 286
BseLI CCNNNNNNNGG 4 cut(s) 174, 219, 255, 555
BseMII CTCAG 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 2 cut(s) 213, 562
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 4 cut(s) 174, 219, 255, 555
BsmFI GGGAC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 4 cut(s) 79, 262, 399, 436
BspACI CCGC 3 cut(s) 146, 413, 486
BspCNI CTCAG 1 cut(s) 76
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 353, 560
BspPI GGATC 2 cut(s) 74, 257
BspQI GCTCTTC 1 cut(s) 380
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 4 cut(s) 79, 262, 399, 436
BssNI GRCGYC 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 266
Bst2UI CCWGG 2 cut(s) 342, 356
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 380
BstACI GRCGYC 1 cut(s) 67
BstC8I GCNNGC 2 cut(s) 210, 533
BstDEI CTNAG 2 cut(s) 84, 416
BstF5I GGATG 4 cut(s) 68, 164, 241, 286
BstFNI CGCG 1 cut(s) 146
BstKTI GATC 4 cut(s) 82, 265, 402, 439
BstMBI GATC 4 cut(s) 79, 262, 399, 436
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 2 cut(s) 342, 356
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 2 cut(s) 340, 354
BstUI CGCG 1 cut(s) 146
BstX2I RGATCY 2 cut(s) 79, 399
BstXI CCANNNNNNTGG 1 cut(s) 348
BstYI RGATCY 2 cut(s) 79, 399
BtsCI GGATG 4 cut(s) 68, 164, 241, 286
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 2 cut(s) 210, 533
Cfr10I RCCGGY 1 cut(s) 212
CseI GACGC 2 cut(s) 56, 152
CviAII CATG 2 cut(s) 368, 532
DdeI CTNAG 2 cut(s) 84, 416
DpnI GATC 4 cut(s) 81, 264, 401, 438
DpnII GATC 4 cut(s) 79, 262, 399, 436
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
EciI GGCGGA 1 cut(s) 475
Ecl136II GAGCTC 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 375
Eco53kI GAGCTC 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 523
EcoRII CCWGG 2 cut(s) 340, 354
EcoT14I CCWWGG 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 2 cut(s) 371, 535
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 1 cut(s) 155
FatI CATG 2 cut(s) 367, 531
FauI CCCGC 1 cut(s) 420
FokI GGATG 4 cut(s) 75, 151, 248, 293
FriOI GRGCYC 1 cut(s) 375
FspBI CTAG 2 cut(s) 306, 543
GsuI CTGGAG 1 cut(s) 324
HapII CCGG 2 cut(s) 213, 562
HgaI GACGC 2 cut(s) 56, 152
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 2 cut(s) 371, 535
HinfI GANTC 1 cut(s) 86
HpaII CCGG 2 cut(s) 213, 562
HphI GGTGA 2 cut(s) 467, 530
Hpy166II GTNNAC 2 cut(s) 246, 258
Hpy188I TCNGA 2 cut(s) 189, 325
Hpy188III TCNNGA 2 cut(s) 77, 83
Hpy8I GTNNAC 2 cut(s) 246, 258
HpyAV CCTTC 2 cut(s) 103, 457
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 84, 416
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 2 cut(s) 371, 535
Kzo9I GATC 4 cut(s) 79, 262, 399, 436
LguI GCTCTTC 1 cut(s) 380
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 306, 543
MaeII ACGT 1 cut(s) 252
MalI GATC 4 cut(s) 81, 264, 401, 438
MboI GATC 4 cut(s) 79, 262, 399, 436
MboII GAAGA 1 cut(s) 367
MflI RGATCY 2 cut(s) 79, 399
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 5 cut(s) 14, 72, 133, 309, 523
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 2 cut(s) 142, 461
MseI TTAA 2 cut(s) 36, 312
MslI CAYNNNNRTG 1 cut(s) 251
MspI CCGG 2 cut(s) 213, 562
MspR9I CCNGG 2 cut(s) 342, 356
Mva1269I GAATGC 1 cut(s) 183
MvaI CCWGG 2 cut(s) 342, 356
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 4 cut(s) 79, 262, 399, 436
NlaIII CATG 2 cut(s) 371, 535
NlaIV GGNNCC 2 cut(s) 353, 560
NspI RCATGY 1 cut(s) 535
OliI CACNNNNGTG 1 cut(s) 251
PaeI GCATGC 1 cut(s) 535
PciSI GCTCTTC 1 cut(s) 380
PctI GAATGC 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 255
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 340, 354
PspGI CCWGG 2 cut(s) 340, 354
PspN4I GGNNCC 2 cut(s) 353, 560
PsuI RGATCY 2 cut(s) 79, 399
RseI CAYNNNNRTG 1 cut(s) 251
SacI GAGCTC 1 cut(s) 375
SapI GCTCTTC 1 cut(s) 380
SaqAI TTAA 2 cut(s) 36, 312
Sau3AI GATC 4 cut(s) 79, 262, 399, 436
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 342, 356
SduI GDGCHC 1 cut(s) 375
SetI ASST 7 cut(s) 55, 153, 163, 255, 346, 375, 555
SfaNI GCATC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 251
SphI GCATGC 1 cut(s) 535
Sse9I AATT 5 cut(s) 14, 72, 133, 309, 523
SsiI CCGC 3 cut(s) 146, 413, 486
SspMI CTAG 2 cut(s) 306, 543
SstI GAGCTC 1 cut(s) 375
StyD4I CCNGG 2 cut(s) 340, 354
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 1 cut(s) 255
TasI AATT 5 cut(s) 14, 72, 133, 309, 523
Tru1I TTAA 2 cut(s) 36, 312
Tru9I TTAA 2 cut(s) 36, 312
TscAI CASTG 1 cut(s) 481
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 1 cut(s) 481
Van91I CCANNNNNTGG 1 cut(s) 255
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 2 cut(s) 14, 523
XceI RCATGY 1 cut(s) 535
XspI CTAG 2 cut(s) 306, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.