Rmu_sc0004771.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004771.1
OG0000591
Physical Location & Seq
Forward (+)
1 .. 616
616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004771.1_g000001.1.cds

Sequence Viewer

Length: 517 bp
tgaggtaagtaaaccagctcatgaaattgtgcctgtgactttgggttggtggaacgactttaaagctgctcacactccaccggctcggactagtaggcagcgggtattacataagtggtgtaaaccatcggctgggtttatcaagctcaatgtggatgcggctttcaacctacaaaccggcctggcggggttgggcggaatttttcgggatcatgaaggtgtggcggttactcctttggtggtagagaccgactgcatggatttggtgcaagctgtggctgggtcttctctggatcactcggacctgggatttttgttaagagacttgagagtgttattgcaagctgcgttaggtgcaagagtggattatagtaatcgtacggcaaatctggtggcgtatactctagcgcaagaggtcaaggttggtcagtttcgggtgaatttttttaccaatattcctccaagtgtggaggctattgtaatctctgattgtaatgattccccatcaatgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

171

Amino Acids

18.6

Weight (kDa)

6.21

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 132
AccI GTMKAC 1 cut(s) 399
AciI CCGC 5 cut(s) 101, 159, 186, 196, 225
AclWI GGATC 2 cut(s) 217, 301
AcsI RAATTY 2 cut(s) 199, 440
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 1 cut(s) 167
AhlI ACTAGT 1 cut(s) 90
AjnI CCWGG 2 cut(s) 181, 304
AluBI AGCT 5 cut(s) 18, 66, 146, 273, 345
AluI AGCT 5 cut(s) 18, 66, 146, 273, 345
Alw26I GTCTC 2 cut(s) 240, 316
AlwI GGATC 2 cut(s) 217, 301
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 3 cut(s) 66, 98, 345
ApoI RAATTY 2 cut(s) 199, 440
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 449
AvaII GGWCC 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 277
BbvI GCAGC 3 cut(s) 53, 110, 332
BccI CCATC 2 cut(s) 134, 512
BceAI ACGGC 1 cut(s) 397
BciT130I CCWGG 2 cut(s) 183, 306
BcoDI GTCTC 2 cut(s) 240, 316
BcuI ACTAGT 1 cut(s) 90
BfaI CTAG 2 cut(s) 91, 405
BisI GCNGC 4 cut(s) 67, 99, 160, 346
BlsI GCNGC 4 cut(s) 68, 100, 161, 347
Bme1390I CCNGG 2 cut(s) 183, 306
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmrFI CCNGG 2 cut(s) 183, 306
BmsI GCATC 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 347
BsaI GGTCTC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse118I RCCGGY 2 cut(s) 80, 177
BseBI CCWGG 2 cut(s) 183, 306
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 132
BseXI GCAGC 3 cut(s) 53, 110, 332
BseYI CCCAGC 2 cut(s) 132, 279
BshFI GGCC 1 cut(s) 181
BsiSI CCGG 2 cut(s) 81, 178
BsiWI CGTACG 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 2 cut(s) 240, 316
BsnI GGCC 1 cut(s) 181
Bso31I GGTCTC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 209, 293
BspACI CCGC 5 cut(s) 101, 159, 186, 196, 225
BspANI GGCC 1 cut(s) 181
BspHI TCATGA 2 cut(s) 20, 212
BspPI GGATC 2 cut(s) 217, 301
BspTNI GGTCTC 1 cut(s) 240
BsrFI RCCGGY 2 cut(s) 80, 177
BssAI RCCGGY 2 cut(s) 80, 177
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 2 cut(s) 209, 293
BssNAI GTATAC 1 cut(s) 400
Bst1107I GTATAC 1 cut(s) 400
Bst2UI CCWGG 2 cut(s) 183, 306
BstC8I GCNNGC 2 cut(s) 271, 343
BstF5I GGATG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 2 cut(s) 212, 296
BstMAI GTCTC 2 cut(s) 240, 316
BstMBI GATC 2 cut(s) 209, 293
BstMWI GCNNNNNNNGC 1 cut(s) 354
BstNI CCWGG 2 cut(s) 183, 306
BstSCI CCNGG 2 cut(s) 181, 304
BstV1I GCAGC 3 cut(s) 53, 110, 332
BstV2I GAAGAC 1 cut(s) 277
BstZ17I GTATAC 1 cut(s) 400
BsuRI GGCC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 271, 343
CciI TCATGA 2 cut(s) 20, 212
CfoI GCGC 1 cut(s) 410
Cfr10I RCCGGY 2 cut(s) 80, 177
Cfr13I GGNCC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 379
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 3 cut(s) 21, 213, 257
CviQI GTAC 1 cut(s) 379
DpnI GATC 2 cut(s) 211, 295
DpnII GATC 2 cut(s) 209, 293
DraI TTTAAA 1 cut(s) 62
EciI GGCGGA 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 181, 304
FaeI CATG 3 cut(s) 24, 216, 260
FaiI YATR 6 cut(s) 22, 112, 214, 258, 370, 400
FatI CATG 3 cut(s) 20, 212, 256
FauI CCCGC 2 cut(s) 94, 179
FblI GTMKAC 1 cut(s) 399
Fnu4HI GCNGC 4 cut(s) 67, 99, 160, 346
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 4 cut(s) 67, 99, 160, 346
FspBI CTAG 2 cut(s) 91, 405
GlaI GCGC 1 cut(s) 409
GluI GCNGC 4 cut(s) 67, 99, 160, 346
GsaI CCCAGC 2 cut(s) 136, 283
HaeIII GGCC 1 cut(s) 181
HapII CCGG 2 cut(s) 81, 178
HhaI GCGC 1 cut(s) 410
Hin1II CATG 3 cut(s) 24, 216, 260
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HinfI GANTC 1 cut(s) 498
HpaII CCGG 2 cut(s) 81, 178
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 3 cut(s) 12, 123, 400
Hpy188I TCNGA 3 cut(s) 88, 302, 488
Hpy188III TCNNGA 4 cut(s) 21, 207, 213, 291
Hpy8I GTNNAC 3 cut(s) 12, 123, 400
HpyAV CCTTC 1 cut(s) 210
HpyCH4V TGCA 4 cut(s) 256, 269, 341, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 354
Hsp92II CATG 3 cut(s) 24, 216, 260
HspAI GCGC 1 cut(s) 408
Kzo9I GATC 2 cut(s) 209, 293
Lsp1109I GCAGC 3 cut(s) 53, 110, 332
LweI GCATC 1 cut(s) 146
MaeI CTAG 2 cut(s) 91, 405
MaeIII GTNAC 2 cut(s) 35, 227
MalI GATC 2 cut(s) 211, 295
MboI GATC 2 cut(s) 209, 293
MboII GAAGA 1 cut(s) 277
MluCI AATT 4 cut(s) 25, 199, 440, 512
MnlI CCTC 3 cut(s) 407, 464, 469
MseI TTAA 2 cut(s) 61, 318
MslI CAYNNNNRTG 1 cut(s) 217
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 2 cut(s) 81, 178
MspR9I CCNGG 2 cut(s) 183, 306
MvaI CCWGG 2 cut(s) 183, 306
MwoI GCNNNNNNNGC 1 cut(s) 354
NdeII GATC 2 cut(s) 209, 293
NlaIII CATG 3 cut(s) 24, 216, 260
NmuCI GTSAC 1 cut(s) 35
PagI TCATGA 2 cut(s) 20, 212
PfeI GAWTC 1 cut(s) 498
Pfl23II CGTACG 1 cut(s) 378
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 4 cut(s) 68, 100, 161, 347
Psp6I CCWGG 2 cut(s) 181, 304
PspFI CCCAGC 2 cut(s) 132, 279
PspGI CCWGG 2 cut(s) 181, 304
PspLI CGTACG 1 cut(s) 378
PspPI GGNCC 1 cut(s) 302
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 2 cut(s) 61, 318
SatI GCNGC 4 cut(s) 67, 99, 160, 346
Sau3AI GATC 2 cut(s) 209, 293
Sau96I GGNCC 1 cut(s) 302
ScrFI CCNGG 2 cut(s) 183, 306
SfaNI GCATC 1 cut(s) 146
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
SpeI ACTAGT 1 cut(s) 90
Sse9I AATT 4 cut(s) 25, 199, 440, 512
SsiI CCGC 5 cut(s) 101, 159, 186, 196, 225
SspI AATATT 1 cut(s) 455
SspMI CTAG 2 cut(s) 91, 405
StyD4I CCNGG 2 cut(s) 181, 304
TaqII GACCGA 1 cut(s) 264
TasI AATT 4 cut(s) 25, 199, 440, 512
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 1 cut(s) 498
Tru1I TTAA 2 cut(s) 61, 318
Tru9I TTAA 2 cut(s) 61, 318
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 3 cut(s) 66, 98, 345
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 37, 229
Van91I CCANNNNNTGG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 2 cut(s) 199, 440
XmiI GTMKAC 1 cut(s) 399
XspI CTAG 2 cut(s) 91, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.