Rroxscaffold_7G00194820

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000591
Physical Location & Seq
Forward (+)
36930353 .. 36930706
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194820.1

Sequence Viewer

Length: 354 bp
ATGGTGTCTAGTTCTACTCGGCATGCGGAGTTGTTGGCTTTGCTTCTAGGAGTGCAGTTGGCTATTCATCAGCATTTCACACCGGTGATAGTGGAAACAGATTGTATGGATTTGGTTCAAGCTATCTCTGGCTCATCCCTTGATCAATCGGAGTTGGGGTTCTTAATTGATGACTTCCGAAACATGTTGCACGATGCTTTAGATGCTAAAGTGGTTTTTGGTAGTAGGCAGGTTAATCTAGTAGCGCAGGAGGCCAAAGCTGGTCAATTTGGTAGGGATTACTTTACCAACATCCCTCCAAGTGTGGAGGCTCTCATACTTTCTTATTGTAATGATGTTTCATCAATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

117

Amino Acids

12.8

Weight (kDa)

4.6

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 5 - 84 2.2e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AciI CCGC 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 183
AgeI ACCGGT 1 cut(s) 82
AgsI TTSAA 1 cut(s) 119
AleI CACNNNNGTG 1 cut(s) 83
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
AluBI AGCT 2 cut(s) 122, 260
AluI AGCT 2 cut(s) 122, 260
AoxI GGCC 1 cut(s) 252
AsiGI ACCGGT 1 cut(s) 82
AspLEI GCGC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 97
BclI TGATCA 1 cut(s) 142
BfaI CTAG 3 cut(s) 9, 47, 239
BfuAI ACCTGC 1 cut(s) 220
BmsI GCATC 2 cut(s) 184, 193
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bse118I RCCGGY 1 cut(s) 82
BseGI GGATG 2 cut(s) 134, 291
BsgI GTGCAG 1 cut(s) 74
BshFI GGCC 1 cut(s) 254
BshTI ACCGGT 1 cut(s) 82
BsiSI CCGG 1 cut(s) 83
BsnI GGCC 1 cut(s) 254
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 254
BspMI ACCTGC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 82
BssMI GATC 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 24
BstF5I GGATG 2 cut(s) 134, 291
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 203, 251
BstNSI RCATGY 2 cut(s) 26, 187
BsuRI GGCC 1 cut(s) 254
BtsCI GGATG 2 cut(s) 134, 291
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 82
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 2 cut(s) 23, 184
CviJI RGCY 7 cut(s) 38, 62, 122, 132, 254, 260, 311
CviKI_1 RGCY 7 cut(s) 38, 62, 122, 132, 254, 260, 311
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
FaeI CATG 2 cut(s) 26, 187
FaiI YATR 4 cut(s) 24, 107, 185, 317
FatI CATG 2 cut(s) 22, 183
FbaI TGATCA 1 cut(s) 142
FokI GGATG 2 cut(s) 121, 278
FspBI CTAG 3 cut(s) 9, 47, 239
GlaI GCGC 1 cut(s) 246
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 83
HhaI GCGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 26, 187
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HpaII CCGG 1 cut(s) 83
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 151, 179
HpyCH4V TGCA 2 cut(s) 55, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 251
Hsp92II CATG 2 cut(s) 26, 187
HspAI GCGC 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 5 cut(s) 96, 114, 215, 233, 246
LweI GCATC 2 cut(s) 184, 193
MaeI CTAG 3 cut(s) 9, 47, 239
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MluCI AATT 3 cut(s) 165, 266, 349
MnlI CCTC 3 cut(s) 244, 301, 306
MseI TTAA 2 cut(s) 164, 234
MslI CAYNNNNRTG 1 cut(s) 83
MspI CCGG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 203, 251
NdeII GATC 1 cut(s) 142
NlaIII CATG 2 cut(s) 26, 187
NspI RCATGY 2 cut(s) 26, 187
OliI CACNNNNGTG 1 cut(s) 83
PaeI GCATGC 1 cut(s) 26
PciI ACATGT 1 cut(s) 183
PinAI ACCGGT 1 cut(s) 82
PscI ACATGT 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 2 cut(s) 164, 234
Sau3AI GATC 1 cut(s) 142
SetI ASST 3 cut(s) 124, 234, 262
SfaNI GCATC 2 cut(s) 184, 193
SgrAI CRCCGGYG 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 83
SphI GCATGC 1 cut(s) 26
Sse9I AATT 3 cut(s) 165, 266, 349
SsiI CCGC 1 cut(s) 26
SspMI CTAG 3 cut(s) 9, 47, 239
TasI AATT 3 cut(s) 165, 266, 349
Tru1I TTAA 2 cut(s) 164, 234
Tru9I TTAA 2 cut(s) 164, 234
TspDTI ATGAA 2 cut(s) 56, 330
XceI RCATGY 2 cut(s) 26, 187
XspI CTAG 3 cut(s) 9, 47, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.