Rorug04G0210900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000591
Physical Location & Seq
Reverse (-)
36711138 .. 36717032
5895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0210900.1

Sequence Viewer

Length: 648 bp
ATGAATATATTCAGATTAGCGGGAGATATGACGCATTTGGCCAGTGTTCTGGTTTTGCTTCTCAAGATCCACACTATCAAGTCATGTGCTGGCGTGTCCTTGAAGACTCAAGAACTCTATGCTCTTGTCTTTGCTACCCGCTATTTGGATATTTTTGTTAGCTTCTACTCAGTATATAATACCTTGATGAAGTTGATATTCTTGGGTAGCTCTTTCTCAATTGTTTGGTATATACGGCACCACAGGATTGTTCGTAGATCATATGATAAAGACCAAGACACATTTCGCCATCTTTTTCTGTTACTCCCATGCCTGCTTTTGGCCCTGGTCATCAATGAGAAATTCACTTTTAGAGAGGTGATGTGGGCTTTTTCCATATATTTGGAAGCAGTCGCCATACTTCCTCAGCTGGTGCTGTTGCAAAGGACAAGAAATATTGACAACCTAACAGGGCAATATGTACTCCTCCTCGGGGCATATCGAGCATTGTACATATTGAACTGGATTTACCGCTACTTTACTGAGGATCACTATGTCCACTGGATAACTTGGGTAGCAGGGATAATCCAGACCTTACTCTATGCTGATTTCTTCTACTATTACTTCCAGAGTTGGAAGAATAATGTAAAGCTCGAGCTGCCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

215

Amino Acids

25.6

Weight (kDa)

9.24

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ER_lumen_recept PF00810 28 - 171 3e-58 ER lumen protein retaining receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 237
AciI CCGC 3 cut(s) 20, 139, 511
AclWI GGATC 2 cut(s) 61, 534
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 2 cut(s) 462, 491
AfiI CCNNNNNNNGG 3 cut(s) 145, 319, 472
AgsI TTSAA 2 cut(s) 103, 499
AjnI CCWGG 1 cut(s) 324
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AluBI AGCT 6 cut(s) 162, 210, 409, 631, 637, 644
AluI AGCT 6 cut(s) 162, 210, 409, 631, 637, 644
AlwI GGATC 2 cut(s) 61, 534
Ama87I CYCGRG 2 cut(s) 470, 632
AoxI GGCC 2 cut(s) 39, 321
ApeKI GCWGC 1 cut(s) 637
ApoI RAATTY 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 370
AvaI CYCGRG 2 cut(s) 470, 632
BalI TGGCCA 1 cut(s) 41
BanI GGYRCC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 110
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 624
BccI CCATC 1 cut(s) 297
BceAI ACGGC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 326
BisI GCNGC 1 cut(s) 638
BlsI GCNGC 1 cut(s) 639
Bme1390I CCNGG 1 cut(s) 326
BmeT110I CYCGRG 2 cut(s) 470, 632
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 405
BpuEI CTTGAG 2 cut(s) 47, 93
BsaJI CCNNGG 2 cut(s) 324, 469
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 319, 472
Bse1I ACTGG 3 cut(s) 42, 506, 545
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 2 cut(s) 324, 469
BseLI CCNNNNNNNGG 3 cut(s) 145, 319, 472
BseMII CTCAG 3 cut(s) 183, 419, 513
BseNI ACTGG 3 cut(s) 42, 506, 545
BseRI GAGGAG 2 cut(s) 455, 458
BseXI GCAGC 1 cut(s) 624
BshFI GGCC 2 cut(s) 41, 323
BshNI GGYRCC 1 cut(s) 237
BsiHKCI CYCGRG 2 cut(s) 470, 632
BslI CCNNNNNNNGG 3 cut(s) 145, 319, 472
BsnI GGCC 2 cut(s) 41, 323
BsoBI CYCGRG 2 cut(s) 470, 632
Bsp1407I TGTACA 1 cut(s) 489
Bsp143I GATC 3 cut(s) 66, 257, 526
BspACI CCGC 3 cut(s) 20, 139, 511
BspANI GGCC 2 cut(s) 41, 323
BspCNI CTCAG 3 cut(s) 182, 418, 514
BspLI GGNNCC 1 cut(s) 239
BspPI GGATC 2 cut(s) 61, 534
BspT107I GGYRCC 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 489
BsrI ACTGG 3 cut(s) 42, 506, 545
BssECI CCNNGG 2 cut(s) 324, 469
BssMI GATC 3 cut(s) 66, 257, 526
Bst2UI CCWGG 1 cut(s) 326
BstAUI TGTACA 1 cut(s) 489
BstC8I GCNNGC 3 cut(s) 91, 314, 642
BstDEI CTNAG 3 cut(s) 169, 405, 522
BstKTI GATC 3 cut(s) 69, 260, 529
BstMBI GATC 3 cut(s) 66, 257, 526
BstMWI GCNNNNNNNGC 2 cut(s) 482, 637
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 624
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 66
BstXI CCANNNNNNTGG 2 cut(s) 49, 382
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 41, 323
BtsIMutI CAGTG 2 cut(s) 49, 538
Cac8I GCNNGC 3 cut(s) 91, 314, 642
Cfr13I GGNCC 1 cut(s) 322
CseI GACGC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 461, 490
CviAII CATG 2 cut(s) 84, 309
CviJI RGCY 9 cut(s) 41, 162, 210, 323, 368, 409, 631, 637, 644
CviKI_1 RGCY 9 cut(s) 41, 162, 210, 323, 368, 409, 631, 637, 644
CviQI GTAC 2 cut(s) 461, 490
DdeI CTNAG 3 cut(s) 169, 405, 522
DpnI GATC 3 cut(s) 68, 259, 528
DpnII GATC 3 cut(s) 66, 257, 526
EaeI YGGCCR 1 cut(s) 39
Eco88I CYCGRG 2 cut(s) 470, 632
EcoRII CCWGG 1 cut(s) 324
FaeI CATG 2 cut(s) 87, 312
FatI CATG 2 cut(s) 83, 308
FauI CCCGC 2 cut(s) 13, 146
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 638
Fsp4HI GCNGC 1 cut(s) 638
GluI GCNGC 1 cut(s) 638
HaeIII GGCC 2 cut(s) 41, 323
HgaI GACGC 1 cut(s) 40
Hin1II CATG 2 cut(s) 87, 312
HinfI GANTC 1 cut(s) 106
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 4 cut(s) 64, 110, 568, 607
Hpy8I GTNNAC 1 cut(s) 538
HpyCH4V TGCA 1 cut(s) 421
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 637
HpyF3I CTNAG 3 cut(s) 169, 405, 522
Hsp92II CATG 2 cut(s) 87, 312
Kzo9I GATC 3 cut(s) 66, 257, 526
Lsp1109I GCAGC 1 cut(s) 624
MaeIII GTNAC 1 cut(s) 300
MalI GATC 3 cut(s) 68, 259, 528
MboI GATC 3 cut(s) 66, 257, 526
MboII GAAGA 3 cut(s) 115, 583, 628
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 66
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 2 cut(s) 219, 341
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 5 cut(s) 349, 414, 476, 479, 517
Mox20I TGGCCA 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 482, 637
NdeI CATATG 1 cut(s) 262
NdeII GATC 3 cut(s) 66, 257, 526
NlaIII CATG 2 cut(s) 87, 312
NlaIV GGNNCC 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 632
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 639
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 1 cut(s) 322
PspXI VCTCGAGB 1 cut(s) 632
PsrI GAACNNNNNNTAC 2 cut(s) 491, 523
PsuI RGATCY 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 409
RsaI GTAC 2 cut(s) 462, 491
RsaNI GTAC 2 cut(s) 461, 490
SatI GCNGC 1 cut(s) 638
Sau3AI GATC 3 cut(s) 66, 257, 526
Sau96I GGNCC 1 cut(s) 322
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 326
Sfr274I CTCGAG 1 cut(s) 632
SlaI CTCGAG 1 cut(s) 632
SmlI CTYRAG 3 cut(s) 62, 108, 632
SmoI CTYRAG 3 cut(s) 62, 108, 632
Sse9I AATT 2 cut(s) 219, 341
SsiI CCGC 3 cut(s) 20, 139, 511
SspI AATATT 1 cut(s) 436
StyD4I CCNGG 1 cut(s) 324
TaqI TCGA 2 cut(s) 481, 633
TasI AATT 2 cut(s) 219, 341
TatI WGTACW 2 cut(s) 460, 489
TscAI CASTG 2 cut(s) 49, 545
TseI GCWGC 1 cut(s) 637
TspDTI ATGAA 2 cut(s) 17, 203
TspRI CASTG 2 cut(s) 49, 545
XapI RAATTY 1 cut(s) 341
XhoI CTCGAG 1 cut(s) 632
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.