Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 3 - 115 | 2.8e-20 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 202 |
| AccBSI | CCGCTC | 1 cut(s) | 320 |
| AciI | CCGC | 1 cut(s) | 320 |
| AfaI | GTAC | 1 cut(s) | 13 |
| AluBI | AGCT | 4 cut(s) | 109, 140, 262, 275 |
| AluI | AGCT | 4 cut(s) | 109, 140, 262, 275 |
| AoxI | GGCC | 1 cut(s) | 114 |
| AspS9I | GGNCC | 1 cut(s) | 115 |
| AsuHPI | GGTGA | 1 cut(s) | 205 |
| BbsI | GAAGAC | 2 cut(s) | 201, 310 |
| BceAI | ACGGC | 1 cut(s) | 213 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 47, 81 |
| BclI | TGATCA | 1 cut(s) | 37 |
| BisI | GCNGC | 1 cut(s) | 321 |
| BlpI | GCTNAGC | 1 cut(s) | 105 |
| BlsI | GCNGC | 1 cut(s) | 322 |
| BmgT120I | GGNCC | 1 cut(s) | 115 |
| BmsI | GCATC | 2 cut(s) | 271, 331 |
| BpiI | GAAGAC | 2 cut(s) | 201, 310 |
| BpmI | CTGGAG | 1 cut(s) | 206 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 105 |
| BseGI | GGATG | 1 cut(s) | 286 |
| BseMII | CTCAG | 2 cut(s) | 96, 105 |
| BseRI | GAGGAG | 1 cut(s) | 39 |
| BsgI | GTGCAG | 1 cut(s) | 152 |
| BshFI | GGCC | 1 cut(s) | 116 |
| BsmI | GAATGC | 2 cut(s) | 70, 355 |
| BsnI | GGCC | 1 cut(s) | 116 |
| Bsp143I | GATC | 2 cut(s) | 37, 75 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 105 |
| BspACI | CCGC | 1 cut(s) | 320 |
| BspANI | GGCC | 1 cut(s) | 116 |
| BspCNI | CTCAG | 2 cut(s) | 97, 104 |
| BspHI | TCATGA | 1 cut(s) | 78 |
| BsrBI | CCGCTC | 1 cut(s) | 320 |
| BssMI | GATC | 2 cut(s) | 37, 75 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 341 |
| BstDEI | CTNAG | 3 cut(s) | 91, 105, 345 |
| BstF5I | GGATG | 1 cut(s) | 286 |
| BstKTI | GATC | 2 cut(s) | 40, 78 |
| BstMBI | GATC | 2 cut(s) | 37, 75 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 55, 92, 101, 281, 317, 341, 350 |
| BstNSI | RCATGY | 1 cut(s) | 104 |
| BstV2I | GAAGAC | 2 cut(s) | 201, 310 |
| BsuRI | GGCC | 1 cut(s) | 116 |
| BtsCI | GGATG | 1 cut(s) | 286 |
| CciI | TCATGA | 1 cut(s) | 78 |
| Cfr13I | GGNCC | 1 cut(s) | 115 |
| Csp6I | GTAC | 1 cut(s) | 12 |
| CviAII | CATG | 4 cut(s) | 59, 79, 101, 269 |
| CviQI | GTAC | 1 cut(s) | 12 |
| DdeI | CTNAG | 3 cut(s) | 91, 105, 345 |
| DpnI | GATC | 2 cut(s) | 39, 77 |
| DpnII | GATC | 2 cut(s) | 37, 75 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 202 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 202 |
| FaeI | CATG | 4 cut(s) | 62, 82, 104, 272 |
| FaiI | YATR | 7 cut(s) | 42, 60, 80, 102, 270, 294, 327 |
| FatI | CATG | 4 cut(s) | 58, 78, 100, 268 |
| FbaI | TGATCA | 1 cut(s) | 37 |
| Fnu4HI | GCNGC | 1 cut(s) | 321 |
| FokI | GGATG | 1 cut(s) | 293 |
| Fsp4HI | GCNGC | 1 cut(s) | 321 |
| GluI | GCNGC | 1 cut(s) | 321 |
| GsuI | CTGGAG | 1 cut(s) | 206 |
| HaeIII | GGCC | 1 cut(s) | 116 |
| Hin1II | CATG | 4 cut(s) | 62, 82, 104, 272 |
| HindIII | AAGCTT | 1 cut(s) | 273 |
| HinfI | GANTC | 2 cut(s) | 7, 148 |
| HphI | GGTGA | 1 cut(s) | 205 |
| Hpy188I | TCNGA | 1 cut(s) | 229 |
| Hpy188III | TCNNGA | 3 cut(s) | 35, 79, 185 |
| HpyCH4V | TGCA | 3 cut(s) | 58, 133, 268 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 55, 92, 101, 281, 317, 341, 350 |
| HpyF3I | CTNAG | 3 cut(s) | 91, 105, 345 |
| Hsp92II | CATG | 4 cut(s) | 62, 82, 104, 272 |
| Ksp22I | TGATCA | 1 cut(s) | 37 |
| Kzo9I | GATC | 2 cut(s) | 37, 75 |
| LmnI | GCTCC | 2 cut(s) | 259, 317 |
| LpnPI | CCDG | 2 cut(s) | 131, 170 |
| LweI | GCATC | 2 cut(s) | 271, 331 |
| MaeIII | GTNAC | 1 cut(s) | 193 |
| MalI | GATC | 2 cut(s) | 39, 77 |
| MbiI | CCGCTC | 1 cut(s) | 320 |
| MboI | GATC | 2 cut(s) | 37, 75 |
| MboII | GAAGA | 3 cut(s) | 201, 204, 315 |
| MluCI | AATT | 1 cut(s) | 165 |
| MnlI | CCTC | 2 cut(s) | 17, 171 |
| Mva1269I | GAATGC | 2 cut(s) | 70, 355 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 55, 92, 101, 281, 317, 341, 350 |
| NdeII | GATC | 2 cut(s) | 37, 75 |
| NlaIII | CATG | 4 cut(s) | 62, 82, 104, 272 |
| NmuCI | GTSAC | 1 cut(s) | 193 |
| NspI | RCATGY | 1 cut(s) | 104 |
| PagI | TCATGA | 1 cut(s) | 78 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 203 |
| PctI | GAATGC | 2 cut(s) | 70, 355 |
| PfeI | GAWTC | 1 cut(s) | 148 |
| PkrI | GCNGC | 1 cut(s) | 322 |
| PspPI | GGNCC | 1 cut(s) | 115 |
| RsaI | GTAC | 1 cut(s) | 13 |
| RsaNI | GTAC | 1 cut(s) | 12 |
| SatI | GCNGC | 1 cut(s) | 321 |
| Sau3AI | GATC | 2 cut(s) | 37, 75 |
| Sau96I | GGNCC | 1 cut(s) | 115 |
| SetI | ASST | 7 cut(s) | 111, 142, 163, 255, 264, 277, 300 |
| SfaNI | GCATC | 2 cut(s) | 271, 331 |
| Sse9I | AATT | 1 cut(s) | 165 |
| SsiI | CCGC | 1 cut(s) | 320 |
| TaqI | TCGA | 1 cut(s) | 74 |
| TasI | AATT | 1 cut(s) | 165 |
| TauI | GCSGC | 1 cut(s) | 323 |
| TfiI | GAWTC | 1 cut(s) | 148 |
| TseFI | GTSAC | 1 cut(s) | 193 |
| Tsp45I | GTSAC | 1 cut(s) | 193 |
| TspDTI | ATGAA | 2 cut(s) | 281, 285 |
| XceI | RCATGY | 1 cut(s) | 104 |