FvH4_3g05011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000591
Physical Location & Seq
Forward (+)
2901243 .. 2901638
396 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05011.t1

Sequence Viewer

Length: 396 bp
ATGCTTTCCCAATTCCTGAAATGGATGACACTACGAAAGGTTTTGTGGATGCTCTACCATGGGTATCTGTCTGGACTTTGGAGGTTATCTTGGGTTTCTGAAATTGCTTCCTTTGTTTCTACTAATCCTACTGCCGGGTTGGATGGAGTATTAGCATGCAGATGGTTCTTTCATGGGCATAACTTCATGCACTTTCTAGTGGATGTTCGTCGTGCAAAACAAGCAGAACTGCTTGCTTGTTTGTATGGGGCAAAGGTTGCATGGGAAAGTGTCGTGGTGCCCTTGGTTGTAGAATCGGAAGGCTTGGCAGTGGTTTCAAAGGTCAATTCTGTCATGAGAGTTTCAGAACTTGTACCTTTGTGTTTAGAGGGATGCAACAATTTCATAAACGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.83

Weight (kDa)

8.43

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 277
AclI AACGTT 1 cut(s) 390
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 318
AsuC2I CCSGG 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 282
BanI GGYRCC 1 cut(s) 277
BccI CCATC 2 cut(s) 137, 156
BcnI CCSGG 1 cut(s) 136
BfaI CTAG 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 2 cut(s) 39, 362
BpuMI CCSGG 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 58, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 58, 282
BseGI GGATG 5 cut(s) 30, 54, 148, 208, 377
BseLI CCNNNNNNNGG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 282
BshNI GGYRCC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 282
Bsp19I CCATGG 1 cut(s) 58
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 277
BssECI CCNNGG 2 cut(s) 58, 282
BssT1I CCWWGG 2 cut(s) 58, 282
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 157, 234
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 5 cut(s) 30, 54, 148, 208, 377
BstMWI GCNNNNNNNGC 2 cut(s) 221, 257
BstNSI RCATGY 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 134
BstSLI GKGCMC 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 5 cut(s) 30, 54, 148, 208, 377
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 2 cut(s) 157, 234
CciI TCATGA 1 cut(s) 333
Csp6I GTAC 1 cut(s) 353
CviAII CATG 6 cut(s) 59, 156, 173, 187, 261, 334
CviJI RGCY 1 cut(s) 303
CviKI_1 RGCY 1 cut(s) 303
CviQI GTAC 1 cut(s) 353
Eco130I CCWWGG 2 cut(s) 58, 282
EcoT14I CCWWGG 2 cut(s) 58, 282
ErhI CCWWGG 2 cut(s) 58, 282
FaeI CATG 6 cut(s) 62, 159, 176, 190, 264, 337
FaiI YATR 9 cut(s) 60, 157, 174, 180, 188, 246, 262, 335, 386
FatI CATG 6 cut(s) 58, 155, 172, 186, 260, 333
FokI GGATG 5 cut(s) 37, 61, 155, 215, 384
FspBI CTAG 1 cut(s) 197
HapII CCGG 1 cut(s) 135
Hin1II CATG 6 cut(s) 62, 159, 176, 190, 264, 337
HinfI GANTC 1 cut(s) 293
HpaII CCGG 1 cut(s) 135
Hpy188I TCNGA 3 cut(s) 100, 298, 346
Hpy188III TCNNGA 3 cut(s) 16, 72, 334
Hpy99I CGWCG 1 cut(s) 213
HpyAV CCTTC 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 5 cut(s) 159, 190, 215, 260, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 257
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 6 cut(s) 62, 159, 176, 190, 264, 337
LpnPI CCDG 3 cut(s) 29, 57, 148
LweI GCATC 2 cut(s) 39, 362
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 4 cut(s) 11, 102, 325, 379
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 2 cut(s) 75, 361
MslI CAYNNNNRTG 1 cut(s) 160
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 136
MwoI GCNNNNNNNGC 2 cut(s) 221, 257
NciI CCSGG 1 cut(s) 136
NcoI CCATGG 1 cut(s) 58
NlaIII CATG 6 cut(s) 62, 159, 176, 190, 264, 337
NlaIV GGNNCC 1 cut(s) 279
NspI RCATGY 1 cut(s) 159
PaeI GCATGC 1 cut(s) 159
PagI TCATGA 1 cut(s) 333
PfeI GAWTC 1 cut(s) 293
Psp1406I AACGTT 1 cut(s) 390
PspN4I GGNNCC 1 cut(s) 279
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
RseI CAYNNNNRTG 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 1 cut(s) 282
SetI ASST 6 cut(s) 42, 86, 258, 324, 358, 393
SfaNI GCATC 2 cut(s) 39, 362
SmiMI CAYNNNNRTG 1 cut(s) 160
SphI GCATGC 1 cut(s) 159
Sse9I AATT 4 cut(s) 11, 102, 325, 379
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 2 cut(s) 58, 282
TaiI ACGT 1 cut(s) 393
TasI AATT 4 cut(s) 11, 102, 325, 379
TfiI GAWTC 1 cut(s) 293
TscAI CASTG 1 cut(s) 315
TspDTI ATGAA 3 cut(s) 161, 175, 373
TspRI CASTG 1 cut(s) 315
XceI RCATGY 1 cut(s) 159
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.