Rmu_sc0034381.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034381.1
OG0000591
Physical Location & Seq
Forward (+)
21 .. 383
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034381.1_g000001.1.cds

Sequence Viewer

Length: 363 bp
atggagtctcccatccatgctctccgggattgtccgcatgcagcaagtattcttcaagtggaaaatattcctactcttactagtgcatctagtgtggcggaatggttaattgttgtttataaccttacaccagacgctttttctccgttgctgatgttgctttgggctacctggagaaatagaaattcccgaatctgggatgaggtaagtaaaccagctcatgaaattgtgcctgtgactttgggttggtggaacgactttaaagctgctcacactccacctgctcggaacagtaggcagcaggtattacataagtggtgtaaaccatcggctgcgtttatcaagttcaatgtggatttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

120

Amino Acids

13.72

Weight (kDa)

7.87

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 120
AarI CACCTGC 1 cut(s) 289
Acc36I ACCTGC 2 cut(s) 289, 292
AciI CCGC 2 cut(s) 35, 98
AcsI RAATTY 1 cut(s) 184
AfiI CCNNNNNNNGG 2 cut(s) 195, 196
AgsI TTSAA 2 cut(s) 56, 349
AhlI ACTAGT 1 cut(s) 80
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 2 cut(s) 218, 266
AluI AGCT 2 cut(s) 218, 266
Alw26I GTCTC 1 cut(s) 12
ApeKI GCWGC 4 cut(s) 41, 266, 298, 332
ApoI RAATTY 1 cut(s) 184
Asp700I GAANNNNTTC 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 26
BbvI GCAGC 4 cut(s) 53, 253, 310, 319
BccI CCATC 2 cut(s) 20, 334
BciT130I CCWGG 1 cut(s) 172
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 12
BcuI ACTAGT 1 cut(s) 80
BfaI CTAG 2 cut(s) 81, 90
BfuAI ACCTGC 2 cut(s) 289, 292
BisI GCNGC 4 cut(s) 42, 267, 299, 333
BlsI GCNGC 4 cut(s) 43, 268, 300, 334
Bme1390I CCNGG 2 cut(s) 26, 172
BmrFI CCNGG 2 cut(s) 26, 172
BmsI GCATC 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 193
BpuMI CCSGG 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 196
BseBI CCWGG 1 cut(s) 172
BseGI GGATG 2 cut(s) 12, 205
BseLI CCNNNNNNNGG 2 cut(s) 195, 196
BseXI GCAGC 4 cut(s) 53, 253, 310, 319
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 195, 196
BsmAI GTCTC 1 cut(s) 12
BspACI CCGC 2 cut(s) 35, 98
BspHI TCATGA 1 cut(s) 220
BspMI ACCTGC 2 cut(s) 289, 292
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 39
BstF5I GGATG 2 cut(s) 12, 205
BstMAI GTCTC 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 24, 170
BstV1I GCAGC 4 cut(s) 53, 253, 310, 319
BtsCI GGATG 2 cut(s) 12, 205
BveI ACCTGC 2 cut(s) 289, 292
Cac8I GCNNGC 1 cut(s) 39
CciI TCATGA 1 cut(s) 220
CseI GACGC 1 cut(s) 143
CviAII CATG 3 cut(s) 17, 38, 221
CviJI RGCY 4 cut(s) 167, 218, 266, 332
CviKI_1 RGCY 4 cut(s) 167, 218, 266, 332
DraI TTTAAA 1 cut(s) 262
EciI GGCGGA 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 170
FaeI CATG 3 cut(s) 20, 41, 224
FaiI YATR 5 cut(s) 18, 39, 120, 222, 312
FatI CATG 3 cut(s) 16, 37, 220
Fnu4HI GCNGC 4 cut(s) 42, 267, 299, 333
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 4 cut(s) 42, 267, 299, 333
FspBI CTAG 2 cut(s) 81, 90
GluI GCNGC 4 cut(s) 42, 267, 299, 333
GsuI CTGGAG 1 cut(s) 193
HapII CCGG 1 cut(s) 25
HgaI GACGC 1 cut(s) 143
Hin1II CATG 3 cut(s) 20, 41, 224
HinfI GANTC 2 cut(s) 5, 192
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 212, 323
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 2 cut(s) 189, 221
Hpy8I GTNNAC 2 cut(s) 212, 323
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 2 cut(s) 41, 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
Hsp92II CATG 3 cut(s) 20, 41, 224
LpnPI CCDG 9 cut(s) 38, 144, 157, 181, 184, 228, 246, 287, 294
Lsp1109I GCAGC 4 cut(s) 53, 253, 310, 319
LweI GCATC 1 cut(s) 95
MaeI CTAG 2 cut(s) 81, 90
MaeIII GTNAC 1 cut(s) 235
MboII GAAGA 1 cut(s) 44
MluCI AATT 3 cut(s) 108, 184, 225
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 3 cut(s) 107, 261, 361
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 2 cut(s) 26, 172
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 157
NciI CCSGG 1 cut(s) 26
NlaIII CATG 3 cut(s) 20, 41, 224
NmuCI GTSAC 1 cut(s) 235
NspI RCATGY 1 cut(s) 41
PaeI GCATGC 1 cut(s) 41
PagI TCATGA 1 cut(s) 220
PaqCI CACCTGC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 192
PfoI TCCNGGA 1 cut(s) 24
PkrI GCNGC 4 cut(s) 43, 268, 300, 334
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PsiI TTATAA 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
SaqAI TTAA 3 cut(s) 107, 261, 361
SatI GCNGC 4 cut(s) 42, 267, 299, 333
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 26, 172
SetI ASST 7 cut(s) 126, 173, 207, 220, 268, 283, 306
SfaNI GCATC 1 cut(s) 95
SpeI ACTAGT 1 cut(s) 80
SphI GCATGC 1 cut(s) 41
Sse9I AATT 3 cut(s) 108, 184, 225
SsiI CCGC 2 cut(s) 35, 98
SspI AATATT 1 cut(s) 67
SspMI CTAG 2 cut(s) 81, 90
StyD4I CCNGG 2 cut(s) 24, 170
TaaI ACNGT 1 cut(s) 293
TasI AATT 3 cut(s) 108, 184, 225
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 3 cut(s) 107, 261, 361
Tru9I TTAA 3 cut(s) 107, 261, 361
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 4 cut(s) 41, 266, 298, 332
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 135
XapI RAATTY 1 cut(s) 184
XceI RCATGY 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 2 cut(s) 81, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.