Rmu_sc0000388.1_g000040

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000388.1
OG0000591
Physical Location & Seq
Reverse (-)
222372 .. 223430
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000388.1_g000040.1.cds

Sequence Viewer

Length: 954 bp
atggcaggcagagaaattttaattaaagtggtagctcaggctttaccgttgtatactatgaattgctatctccttcctcagactctcattaaggaactccatcaattgtgtgcccagttctggtggggcagcacagatgagaagaaggctatacattggcgtgcttgggatgaactttgcaaacccaaaaacttgggaggaatgggctttcgacaccttaatttctgggatgctcctctaggctcacaaccatcctacacatggagaagcatattgcaaggtagagacattcttcgagctggtatcaaacgacatattgggaatggtatttctacccatatatggttggacccatggttgatggatgaggatttgagtgtctatttcacggacagagtaactctagtggccgatctcttcacatctccaggagtgtggaactctacattattatcagaattatttcctgctaatattgtgcagaagattctttctattcctcttggtcctcggaaccatgatgataggtggatatggggtggtgacaaaagaggtcagttcacggttaaatcagcctaccatgtagctcggagccggattctcaatgatgatcatgtcctacctaaccctagtgcttctctctggcgtcgactgtggaccactccagttccaggtaatgtcaagatttgtgcatggaaagcagcatctaatattcttcctactcgaagtaggcttagtgaacgaggtattgatttggatacccaatgcccactctgtaatgaagaagttgaagctcctattcatgcagtctgcgattgtcctcatgctactggcttgtttcagggagccaacctacctttagtttcgaaccccacaaatgttgcagattggctctcatctgtcaccccacagacttttgcctctaccctgatgatcctctgggctacttggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

317

Amino Acids

35.87

Weight (kDa)

8.12

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 53, 649
AclWI GGATC 1 cut(s) 928
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 1 cut(s) 15
AcyI GRCGYC 1 cut(s) 646
AfiI CCNNNNNNNGG 4 cut(s) 120, 261, 342, 671
AgsI TTSAA 1 cut(s) 791
AjnI CCWGG 2 cut(s) 427, 670
AluBI AGCT 4 cut(s) 35, 299, 587, 794
AluI AGCT 4 cut(s) 35, 299, 587, 794
Alw26I GTCTC 1 cut(s) 279
AlwI GGATC 1 cut(s) 928
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 2 cut(s) 129, 701
ApoI RAATTY 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 462
AspS9I GGNCC 3 cut(s) 349, 506, 657
AsuHPI GGTGA 2 cut(s) 554, 895
AsuII TTCGAA 1 cut(s) 866
AvaII GGWCC 3 cut(s) 349, 506, 657
BaeGI GKGCMC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 141, 713
BccI CCATC 3 cut(s) 108, 259, 355
BciT130I CCWGG 2 cut(s) 429, 672
BciVI GTATCC 1 cut(s) 751
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 3 cut(s) 239, 404, 630
BfuI GTATCC 1 cut(s) 751
BisI GCNGC 2 cut(s) 130, 702
BlsI GCNGC 2 cut(s) 131, 703
Bme1390I CCNGG 2 cut(s) 429, 672
Bme18I GGWCC 3 cut(s) 349, 506, 657
BmgT120I GGNCC 3 cut(s) 349, 506, 657
BmiI GGNNCC 4 cut(s) 351, 515, 593, 847
BmrFI CCNGG 2 cut(s) 429, 672
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 220, 713
BmuI ACTGGG 1 cut(s) 109
BpmI CTGGAG 2 cut(s) 411, 648
Bpu10I CCTNAGC 1 cut(s) 36
Bpu14I TTCGAA 1 cut(s) 866
BsaHI GRCGYC 1 cut(s) 646
BsaJI CCNNGG 2 cut(s) 353, 509
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 261, 342, 671
Bse1I ACTGG 3 cut(s) 115, 665, 835
BseBI CCWGG 2 cut(s) 429, 672
BseDI CCNNGG 2 cut(s) 353, 509
BseGI GGATG 4 cut(s) 175, 235, 251, 370
BseLI CCNNNNNNNGG 4 cut(s) 120, 261, 342, 671
BseMII CTCAG 2 cut(s) 50, 92
BseNI ACTGG 3 cut(s) 115, 665, 835
BseRI GAGGAG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 115
BseXI GCAGC 2 cut(s) 141, 713
BsgI GTGCAG 1 cut(s) 500
BshFI GGCC 1 cut(s) 410
BsiSI CCGG 1 cut(s) 595
BslI CCNNNNNNNGG 4 cut(s) 120, 261, 342, 671
BsmAI GTCTC 1 cut(s) 279
BsnI GGCC 1 cut(s) 410
Bsp119I TTCGAA 1 cut(s) 866
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 3 cut(s) 412, 610, 933
Bsp19I CCATGG 1 cut(s) 353
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 2 cut(s) 49, 91
BspLI GGNNCC 4 cut(s) 351, 515, 593, 847
BspPI GGATC 1 cut(s) 928
BspT104I TTCGAA 1 cut(s) 866
BsrI ACTGG 3 cut(s) 115, 665, 835
BssECI CCNNGG 2 cut(s) 353, 509
BssMI GATC 3 cut(s) 412, 610, 933
BssNAI GTATAC 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 646
BssT1I CCWWGG 1 cut(s) 353
Bst1107I GTATAC 1 cut(s) 54
Bst2UI CCWGG 2 cut(s) 429, 672
Bst4CI ACNGT 3 cut(s) 48, 565, 654
Bst6I CTCTTC 1 cut(s) 422
BstACI GRCGYC 1 cut(s) 646
BstBI TTCGAA 1 cut(s) 866
BstC8I GCNNGC 2 cut(s) 7, 162
BstDEI CTNAG 3 cut(s) 36, 78, 734
BstDSI CCRYGG 1 cut(s) 353
BstF5I GGATG 4 cut(s) 175, 235, 251, 370
BstKTI GATC 3 cut(s) 415, 613, 936
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 3 cut(s) 412, 610, 933
BstMWI GCNNNNNNNGC 1 cut(s) 698
BstNI CCWGG 2 cut(s) 429, 672
BstSCI CCNGG 2 cut(s) 427, 670
BstSLI GKGCMC 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 141, 713
BstXI CCANNNNNNTGG 2 cut(s) 193, 435
BstZ17I GTATAC 1 cut(s) 54
BsuI GTATCC 1 cut(s) 751
BsuRI GGCC 1 cut(s) 410
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 4 cut(s) 175, 235, 251, 370
Cac8I GCNNGC 2 cut(s) 7, 162
Cfr13I GGNCC 3 cut(s) 349, 506, 657
CseI GACGC 1 cut(s) 635
CspCI CAANNNNNGTGG 2 cut(s) 862, 897
CviAII CATG 8 cut(s) 261, 354, 518, 581, 614, 693, 803, 824
DdeI CTNAG 3 cut(s) 36, 78, 734
DpnI GATC 3 cut(s) 414, 612, 935
DpnII GATC 3 cut(s) 412, 610, 933
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Eco130I CCWWGG 1 cut(s) 353
Eco47I GGWCC 3 cut(s) 349, 506, 657
EcoRII CCWGG 2 cut(s) 427, 670
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 8 cut(s) 264, 357, 521, 584, 617, 696, 806, 827
FatI CATG 8 cut(s) 260, 353, 517, 580, 613, 692, 802, 823
FbaI TGATCA 1 cut(s) 610
FblI GTMKAC 2 cut(s) 53, 649
Fnu4HI GCNGC 2 cut(s) 130, 702
FokI GGATG 4 cut(s) 182, 238, 242, 377
Fsp4HI GCNGC 2 cut(s) 130, 702
FspBI CTAG 3 cut(s) 239, 404, 630
GluI GCNGC 2 cut(s) 130, 702
GsuI CTGGAG 2 cut(s) 411, 648
HaeIII GGCC 1 cut(s) 410
HapII CCGG 1 cut(s) 595
HgaI GACGC 1 cut(s) 635
Hin1I GRCGYC 1 cut(s) 646
Hin1II CATG 8 cut(s) 264, 357, 521, 584, 617, 696, 806, 827
HincII GTYRAC 1 cut(s) 650
HindII GTYRAC 1 cut(s) 650
HinfI GANTC 3 cut(s) 82, 487, 598
HpaII CCGG 1 cut(s) 595
HphI GGTGA 2 cut(s) 554, 895
Hpy166II GTNNAC 5 cut(s) 54, 561, 650, 657, 740
Hpy188I TCNGA 4 cut(s) 81, 457, 513, 591
Hpy188III TCNNGA 1 cut(s) 682
Hpy8I GTNNAC 5 cut(s) 54, 561, 650, 657, 740
Hpy99I CGWCG 1 cut(s) 651
HpyAV CCTTC 2 cut(s) 83, 139
HpyCH4III ACNGT 3 cut(s) 48, 565, 654
HpyCH4V TGCA 6 cut(s) 180, 277, 481, 692, 806, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 698
HpyF3I CTNAG 3 cut(s) 36, 78, 734
Hsp92I GRCGYC 1 cut(s) 646
Hsp92II CATG 8 cut(s) 264, 357, 521, 584, 617, 696, 806, 827
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 3 cut(s) 412, 610, 933
LmnI GCTCC 4 cut(s) 238, 591, 799, 845
Lsp1109I GCAGC 2 cut(s) 141, 713
LweI GCATC 2 cut(s) 220, 713
MaeI CTAG 3 cut(s) 239, 404, 630
MaeIII GTNAC 3 cut(s) 397, 542, 901
MalI GATC 3 cut(s) 414, 612, 935
MboI GATC 3 cut(s) 412, 610, 933
MboII GAAGA 6 cut(s) 154, 284, 409, 496, 707, 794
MfeI CAATTG 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 6 cut(s) 15, 21, 61, 104, 220, 458
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 5 cut(s) 20, 24, 90, 219, 567
MslI CAYNNNNRTG 1 cut(s) 159
MspI CCGG 1 cut(s) 595
MspR9I CCNGG 2 cut(s) 429, 672
MunI CAATTG 1 cut(s) 104
MvaI CCWGG 2 cut(s) 429, 672
MwoI GCNNNNNNNGC 1 cut(s) 698
NcoI CCATGG 1 cut(s) 353
NdeII GATC 3 cut(s) 412, 610, 933
NlaIII CATG 8 cut(s) 264, 357, 521, 584, 617, 696, 806, 827
NlaIV GGNNCC 4 cut(s) 351, 515, 593, 847
NmuCI GTSAC 2 cut(s) 542, 901
NspV TTCGAA 1 cut(s) 866
PacI TTAATTAA 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 487, 598
PfoI TCCNGGA 1 cut(s) 427
PkrI GCNGC 2 cut(s) 131, 703
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 427, 670
PspGI CCWGG 2 cut(s) 427, 670
PspN4I GGNNCC 4 cut(s) 351, 515, 593, 847
PspPI GGNCC 3 cut(s) 349, 506, 657
RseI CAYNNNNRTG 1 cut(s) 159
SalI GTCGAC 1 cut(s) 648
SaqAI TTAA 5 cut(s) 20, 24, 90, 219, 567
SatI GCNGC 2 cut(s) 130, 702
Sau3AI GATC 3 cut(s) 412, 610, 933
Sau96I GGNCC 3 cut(s) 349, 506, 657
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 429, 672
SduI GDGCHC 1 cut(s) 115
SfaNI GCATC 2 cut(s) 220, 713
SfuI TTCGAA 1 cut(s) 866
SinI GGWCC 3 cut(s) 349, 506, 657
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 6 cut(s) 15, 21, 61, 104, 220, 458
SspI AATATT 2 cut(s) 475, 712
SspMI CTAG 3 cut(s) 239, 404, 630
StyD4I CCNGG 2 cut(s) 427, 670
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 3 cut(s) 48, 565, 654
TaqI TCGA 5 cut(s) 211, 295, 649, 724, 866
TasI AATT 6 cut(s) 15, 21, 61, 104, 220, 458
TfiI GAWTC 2 cut(s) 487, 598
Tru1I TTAA 5 cut(s) 20, 24, 90, 219, 567
Tru9I TTAA 5 cut(s) 20, 24, 90, 219, 567
TseFI GTSAC 2 cut(s) 542, 901
TseI GCWGC 2 cut(s) 129, 701
Tsp45I GTSAC 2 cut(s) 542, 901
TspDTI ATGAA 4 cut(s) 74, 186, 791, 795
TspGWI ACGGA 1 cut(s) 404
VpaK11BI GGWCC 3 cut(s) 349, 506, 657
XapI RAATTY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 258
XmiI GTMKAC 2 cut(s) 53, 649
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 3 cut(s) 239, 404, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.