Rmu_sc0002116.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002116.1
OG0000591
Physical Location & Seq
Forward (+)
1 .. 5502
5502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002116.1_g000001.1.cds

Sequence Viewer

Length: 1803 bp
ttgggtgtagaacatgagagcaaggtcgtgaaggccgcgtttggagtggctgttgatgatggagctccagaagaagacggtggggttttgggtgcggcggaagagggcgacggagtagtcgaggcggcccaaggaggcgtaggagcgttggagcttgaagttgaggattcggtggtggtggaggttgtggcggaggagaagcgcgtgggtttggaggaggtggtggatggagtttggcttgtcgatcaggaatatctgggagagatggctatggggatcgagtgggttaaaaaggattggttggacgtacagaggctcagtcatgggaacaatctgatatcgtcatcatcgtcgtcattttccaccggtgatagaaggtggaggagggtcgcaaggaccaaatcatgcgctcgaggtgggattgatggtgatgggtggtctggtttggggttgcaagtgtgggacttgggtttaacccagagcttttccagcttgtttggtggcggtgcgctggtggttgttaggggcaacaaggtgtcgttgctttggctcttgcacgccggggttgatgcgacagtagcaatggagggacgatggaggcgctgctgggttgatgtcgcgacggaggcggtcttgcagagtatggattgggcttgggctttaggctggtgtgggctcctggtcatgtttcctgggtcgttaataagtcactaccacatggtaggacgaggtggactttgtccagatctgcgcatcttgcgtgccttgtctgccctaggtaggcagcgagttcttcactttgttaagtggtcacaacctcctactggcaggatgaaactaagtgtccccggatttattttacagtggcaacatagtgggaaagctgattttattagtaaaatatggcttcaagtaagcttttactttcctgtatgtcaccattcttgtaaagcgaatagagtagccagaagtgcactcttcactaattcgtgcagtttagaatacatgttcttacttgagacgcctggtccggctaggaggttaagctgcatcgtctggtgcaccttctggtcgagatttgaggtgagtgccgccaaatcaaatttggagaagaaaggaccctacaacgccaccacgaagcaatgcacggcgcacagcttcgactcctgcacctcgtgggttttaggtggcgttggtgatggcggtggggattggggcatggattcggaggcggcatttgaggaagatcgatatggggcatgcatacgccgtcatattggcaatgggctctccaccaatatctggattgatccttggttgttaggagagaagctgcagcaatttcaatctcctcgtgcgcaatgggtttcagacctcatctcctccccaggtacatggaattatgccctgttaactgagttatttcctatgaccattgtgcgaaaaaatttagcacttccacttagtgttagacctcatgaagatcgatggattcagagtggggataagaaagggaggttcacggtcaaatcggcctatcatactgctaggtgtagaattttgggggaatctacgcctgcctcaaatcctagttctgaactttggactcaactctggaaagctcctgtaccggggaagatcaaagtatgtgtgtggaaggctgcttcaaatatcctacctactcggagcaggctgagtgaacgtgatattgatattgatacccaatgcccattctgtaaggaggaaattgaatctccccttcatgcactacgtgattgcatccatgccaagtctttcttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

600

Amino Acids

66.32

Weight (kDa)

6.61

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
Acc16I TGCGCA 2 cut(s) 752, 1359
AccB7I CCANNNNNTGG 1 cut(s) 1302
AccII CGCG 3 cut(s) 38, 204, 620
AclWI GGATC 2 cut(s) 284, 1304
AcsI RAATTY 3 cut(s) 1102, 1447, 1557
AcyI GRCGYC 1 cut(s) 1022
AdeI CACNNNGTG 3 cut(s) 1176, 1466, 1772
AfaI GTAC 3 cut(s) 309, 1393, 1629
AfiI CCNNNNNNNGG 4 cut(s) 780, 824, 1302, 1631
AflIII ACRYGT 1 cut(s) 1005
AgeI ACCGGT 1 cut(s) 365
AgsI TTSAA 5 cut(s) 158, 911, 1346, 1668, 1751
AhdI GACNNNNNGTC 1 cut(s) 1026
AjnI CCWGG 4 cut(s) 678, 691, 1024, 1387
Alw21I GWGCWC 3 cut(s) 67, 976, 1064
Alw26I GTCTC 1 cut(s) 1013
Alw44I GTGCAC 2 cut(s) 972, 1060
AlwI GGATC 2 cut(s) 284, 1304
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 3 cut(s) 33, 126, 1533
ApaLI GTGCAC 2 cut(s) 972, 1060
ApeKI GCWGC 6 cut(s) 603, 784, 1047, 1333, 1336, 1661
ApoI RAATTY 3 cut(s) 1102, 1447, 1557
AsiGI ACCGGT 1 cut(s) 365
AspA2I CCTAGG 1 cut(s) 775
AspLEI GCGC 7 cut(s) 204, 410, 511, 603, 753, 1153, 1360
AspS9I GGNCC 4 cut(s) 127, 396, 1028, 1118
AsuC2I CCSGG 3 cut(s) 562, 849, 1632
AsuHPI GGTGA 5 cut(s) 380, 440, 929, 1096, 1208
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 3 cut(s) 396, 1028, 1118
AvrII CCTAGG 1 cut(s) 775
BaeGI GKGCMC 2 cut(s) 976, 1064
BanII GRGCYC 3 cut(s) 67, 678, 1290
BauI CACGAG 2 cut(s) 1174, 1353
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 3 cut(s) 67, 976, 1064
BbvI GCAGC 6 cut(s) 590, 796, 1034, 1320, 1348, 1648
BccI CCATC 8 cut(s) 53, 221, 259, 419, 425, 588, 1193, 1482
BceAI ACGGC 2 cut(s) 1164, 1254
BciT130I CCWGG 4 cut(s) 680, 693, 1026, 1389
BcnI CCSGG 3 cut(s) 562, 849, 1632
BcoDI GTCTC 1 cut(s) 1013
BfaI CTAG 4 cut(s) 776, 1035, 1548, 1590
BfmI CTRYAG 1 cut(s) 1334
BfoI RGCGCY 1 cut(s) 604
BglII AGATCT 1 cut(s) 745
BlnI CCTAGG 1 cut(s) 775
Bme1390I CCNGG 7 cut(s) 562, 680, 693, 849, 1026, 1389, 1632
Bme18I GGWCC 3 cut(s) 396, 1028, 1118
BmeRI GACNNNNNGTC 1 cut(s) 1026
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 4 cut(s) 127, 396, 1028, 1118
BmiI GGNNCC 2 cut(s) 677, 1120
BmrFI CCNGG 7 cut(s) 562, 680, 693, 849, 1026, 1389, 1632
BmsI GCATC 4 cut(s) 559, 762, 1059, 1788
BpiI GAAGAC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 1037
BpuMI CCSGG 3 cut(s) 562, 849, 1632
Bsa29I ATCGAT 2 cut(s) 1249, 1486
BsaAI YACGTR 1 cut(s) 1772
BsaHI GRCGYC 1 cut(s) 1022
BsaJI CCNNGG 8 cut(s) 130, 561, 692, 775, 847, 1313, 1387, 1631
BsaWI WCCGGW 1 cut(s) 365
BsaXI ACNNNNNCTCC 4 cut(s) 36, 66, 1364, 1394
Bsc4I CCNNNNNNNGG 4 cut(s) 780, 824, 1302, 1631
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 1 cut(s) 829
Bse3DI GCAATG 4 cut(s) 588, 1148, 1288, 1367
BseBI CCWGG 4 cut(s) 680, 693, 1026, 1389
BseCI ATCGAT 2 cut(s) 1249, 1486
BseDI CCNNGG 8 cut(s) 130, 561, 692, 775, 847, 1313, 1387, 1631
BseGI GGATG 3 cut(s) 232, 837, 1779
BseLI CCNNNNNNNGG 4 cut(s) 780, 824, 1302, 1631
BseMI GCAATG 4 cut(s) 588, 1148, 1288, 1367
BseMII CTCAG 3 cut(s) 331, 1407, 1685
BseNI ACTGG 1 cut(s) 829
BseRI GAGGAG 5 cut(s) 209, 230, 397, 1341, 1372
BseSI GKGCMC 2 cut(s) 976, 1064
BseXI GCAGC 6 cut(s) 590, 796, 1034, 1320, 1348, 1648
BseYI CCCAGC 1 cut(s) 606
BsgI GTGCAG 2 cut(s) 1012, 1153
Bsh1236I CGCG 3 cut(s) 38, 204, 620
BshFI GGCC 3 cut(s) 35, 128, 1535
BshTI ACCGGT 1 cut(s) 365
BshVI ATCGAT 2 cut(s) 1249, 1486
BsiHKAI GWGCWC 3 cut(s) 67, 976, 1064
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 5 cut(s) 366, 561, 849, 1031, 1631
BslFI GGGAC 3 cut(s) 476, 603, 830
BslI CCNNNNNNNGG 4 cut(s) 780, 824, 1302, 1631
BsmAI GTCTC 1 cut(s) 1013
BsmBI CGTCTC 1 cut(s) 1013
BsmFI GGGAC 3 cut(s) 476, 603, 830
BsnI GGCC 3 cut(s) 35, 128, 1535
BsoBI CYCGRG 1 cut(s) 411
Bsp1286I GDGCHC 5 cut(s) 67, 678, 976, 1064, 1290
Bsp143I GATC 7 cut(s) 244, 276, 745, 1246, 1309, 1483, 1638
Bsp68I TCGCGA 1 cut(s) 620
BspANI GGCC 3 cut(s) 35, 128, 1535
BspCNI CTCAG 3 cut(s) 330, 1408, 1686
BspDI ATCGAT 2 cut(s) 1249, 1486
BspFNI CGCG 3 cut(s) 38, 204, 620
BspHI TCATGA 1 cut(s) 1477
BspLI GGNNCC 2 cut(s) 677, 1120
BspMAI CTGCAG 1 cut(s) 1338
BspPI GGATC 2 cut(s) 284, 1304
BsrDI GCAATG 4 cut(s) 588, 1148, 1288, 1367
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 1 cut(s) 829
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 8 cut(s) 130, 561, 692, 775, 847, 1313, 1387, 1631
BssMI GATC 7 cut(s) 244, 276, 745, 1246, 1309, 1483, 1638
BssNI GRCGYC 1 cut(s) 1022
BssSI CACGAG 2 cut(s) 1174, 1353
BssT1I CCWWGG 3 cut(s) 130, 775, 1313
Bst2BI CACGAG 2 cut(s) 1174, 1353
Bst2UI CCWGG 4 cut(s) 680, 693, 1026, 1389
Bst4CI ACNGT 4 cut(s) 80, 577, 864, 1525
Bst6I CTCTTC 2 cut(s) 96, 983
BstACI GRCGYC 1 cut(s) 1022
BstBAI YACGTR 1 cut(s) 1772
BstC8I GCNNGC 5 cut(s) 558, 762, 1261, 1578, 1691
BstDEI CTNAG 5 cut(s) 317, 839, 1416, 1463, 1694
BstF5I GGATG 3 cut(s) 232, 837, 1779
BstFNI CGCG 3 cut(s) 38, 204, 620
BstH2I RGCGCY 1 cut(s) 604
BstHHI GCGC 7 cut(s) 204, 410, 511, 603, 753, 1153, 1360
BstKTI GATC 7 cut(s) 247, 279, 748, 1249, 1312, 1486, 1641
BstMAI GTCTC 1 cut(s) 1013
BstMBI GATC 7 cut(s) 244, 276, 745, 1246, 1309, 1483, 1638
BstMWI GCNNNNNNNGC 6 cut(s) 489, 578, 626, 757, 770, 971
BstNI CCWGG 4 cut(s) 680, 693, 1026, 1389
BstNSI RCATGY 2 cut(s) 1009, 1263
BstSCI CCNGG 7 cut(s) 560, 678, 691, 847, 1024, 1387, 1630
BstSFI CTRYAG 1 cut(s) 1334
BstSLI GKGCMC 2 cut(s) 976, 1064
BstUI CGCG 3 cut(s) 38, 204, 620
BstV1I GCAGC 6 cut(s) 590, 796, 1034, 1320, 1348, 1648
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 745
BstXI CCANNNNNNTGG 1 cut(s) 1395
BstYI RGATCY 1 cut(s) 745
Bsu15I ATCGAT 2 cut(s) 1249, 1486
BsuRI GGCC 3 cut(s) 35, 128, 1535
BsuTUI ATCGAT 2 cut(s) 1249, 1486
BtsCI GGATG 3 cut(s) 232, 837, 1779
BtsIMutI CAGTG 1 cut(s) 869
BtuMI TCGCGA 1 cut(s) 620
Cac8I GCNNGC 5 cut(s) 558, 762, 1261, 1578, 1691
CciI TCATGA 1 cut(s) 1477
CfoI GCGC 7 cut(s) 204, 410, 511, 603, 753, 1153, 1360
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 4 cut(s) 127, 396, 1028, 1118
ClaI ATCGAT 2 cut(s) 1249, 1486
CseI GACGC 1 cut(s) 1030
Csp6I GTAC 3 cut(s) 308, 1392, 1628
CspAI ACCGGT 1 cut(s) 365
CviQI GTAC 3 cut(s) 308, 1392, 1628
DdeI CTNAG 5 cut(s) 317, 839, 1416, 1463, 1694
DpnI GATC 7 cut(s) 246, 278, 747, 1248, 1311, 1485, 1640
DpnII GATC 7 cut(s) 244, 276, 745, 1246, 1309, 1483, 1638
DraIII CACNNNGTG 3 cut(s) 1176, 1466, 1772
DrdI GACNNNNNNGTC 1 cut(s) 116
DriI GACNNNNNGTC 1 cut(s) 1026
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 2 cut(s) 96, 983
Eam1105I GACNNNNNGTC 1 cut(s) 1026
EarI CTCTTC 2 cut(s) 96, 983
EciI GGCGGA 2 cut(s) 113, 206
Ecl136II GAGCTC 1 cut(s) 65
Eco130I CCWWGG 3 cut(s) 130, 775, 1313
Eco24I GRGCYC 3 cut(s) 67, 678, 1290
Eco32I GATATC 1 cut(s) 339
Eco47I GGWCC 3 cut(s) 396, 1028, 1118
Eco53kI GAGCTC 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 411
EcoICRI GAGCTC 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 1118
EcoRII CCWGG 4 cut(s) 678, 691, 1024, 1387
EcoRV GATATC 1 cut(s) 339
EcoT14I CCWWGG 3 cut(s) 130, 775, 1313
EcoT22I ATGCAT 1 cut(s) 1265
EcoT38I GRGCYC 3 cut(s) 67, 678, 1290
ErhI CCWWGG 3 cut(s) 130, 775, 1313
Esp3I CGTCTC 1 cut(s) 1013
FalI AAGNNNNNCTT 1 cut(s) 1781
FaqI GGGAC 3 cut(s) 476, 603, 830
FokI GGATG 3 cut(s) 239, 844, 1766
FriOI GRGCYC 3 cut(s) 67, 678, 1290
FspBI CTAG 4 cut(s) 776, 1035, 1548, 1590
FspI TGCGCA 2 cut(s) 752, 1359
GlaI GCGC 7 cut(s) 203, 409, 510, 602, 752, 1152, 1359
GsaI CCCAGC 1 cut(s) 610
GsuI CTGGAG 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 604
HaeIII GGCC 3 cut(s) 35, 128, 1535
HapII CCGG 5 cut(s) 366, 561, 849, 1031, 1631
HgaI GACGC 1 cut(s) 1030
HhaI GCGC 7 cut(s) 204, 410, 511, 603, 753, 1153, 1360
Hin1I GRCGYC 1 cut(s) 1022
Hin6I GCGC 7 cut(s) 202, 408, 509, 601, 751, 1151, 1358
HinP1I GCGC 7 cut(s) 202, 408, 509, 601, 751, 1151, 1358
HincII GTYRAC 1 cut(s) 1413
HindII GTYRAC 1 cut(s) 1413
HindIII AAGCTT 1 cut(s) 916
HinfI GANTC 7 cut(s) 167, 1163, 1223, 1492, 1568, 1606, 1751
HpaI GTTAAC 1 cut(s) 1413
HpaII CCGG 5 cut(s) 366, 561, 849, 1031, 1631
HphI GGTGA 5 cut(s) 380, 440, 929, 1096, 1208
Hpy166II GTNNAC 6 cut(s) 734, 974, 1062, 1413, 1521, 1700
Hpy188I TCNGA 6 cut(s) 336, 1228, 1372, 1497, 1597, 1686
Hpy188III TCNNGA 9 cut(s) 28, 68, 248, 619, 743, 1074, 1303, 1478, 1615
Hpy8I GTNNAC 6 cut(s) 734, 974, 1062, 1413, 1521, 1700
Hpy99I CGWCG 3 cut(s) 113, 355, 625
HpyAV CCTTC 5 cut(s) 25, 369, 1075, 1651, 1769
HpyCH4III ACNGT 4 cut(s) 80, 577, 864, 1525
HpyCH4IV ACGT 3 cut(s) 306, 1702, 1771
HpyF10VI GCNNNNNNNGC 6 cut(s) 489, 578, 626, 757, 770, 971
HpyF3I CTNAG 5 cut(s) 317, 839, 1416, 1463, 1694
HpySE526I ACGT 3 cut(s) 306, 1702, 1771
Hsp92I GRCGYC 1 cut(s) 1022
HspAI GCGC 7 cut(s) 202, 408, 509, 601, 751, 1151, 1358
KspAI GTTAAC 1 cut(s) 1413
Kzo9I GATC 7 cut(s) 244, 276, 745, 1246, 1309, 1483, 1638
LmnI GCTCC 7 cut(s) 62, 70, 143, 151, 681, 1627, 1686
Lsp1109I GCAGC 6 cut(s) 590, 796, 1034, 1320, 1348, 1648
LweI GCATC 4 cut(s) 559, 762, 1059, 1788
MaeI CTAG 4 cut(s) 776, 1035, 1548, 1590
MaeII ACGT 3 cut(s) 306, 1702, 1771
MaeIII GTNAC 3 cut(s) 707, 810, 935
MalI GATC 7 cut(s) 246, 278, 747, 1248, 1311, 1485, 1640
MboI GATC 7 cut(s) 244, 276, 745, 1246, 1309, 1483, 1638
MboII GAAGA 9 cut(s) 83, 86, 113, 785, 970, 1123, 1256, 1493, 1648
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 5 cut(s) 67, 678, 976, 1064, 1290
MluCI AATT 7 cut(s) 985, 1102, 1340, 1399, 1447, 1557, 1746
MlyI GAGTC 2 cut(s) 1157, 1600
MmeI TCCRAC 2 cut(s) 129, 282
Mph1103I ATGCAT 1 cut(s) 1265
MseI TTAA 6 cut(s) 288, 473, 701, 804, 1043, 1412
MspI CCGG 5 cut(s) 366, 561, 849, 1031, 1631
MspR9I CCNGG 7 cut(s) 562, 680, 693, 849, 1026, 1389, 1632
MvaI CCWGG 4 cut(s) 680, 693, 1026, 1389
MvnI CGCG 3 cut(s) 38, 204, 620
MwoI GCNNNNNNNGC 6 cut(s) 489, 578, 626, 757, 770, 971
NciI CCSGG 3 cut(s) 562, 849, 1632
NdeII GATC 7 cut(s) 244, 276, 745, 1246, 1309, 1483, 1638
NlaIV GGNNCC 2 cut(s) 677, 1120
NmuCI GTSAC 3 cut(s) 707, 810, 935
NruI TCGCGA 1 cut(s) 620
NsbI TGCGCA 2 cut(s) 752, 1359
NsiI ATGCAT 1 cut(s) 1265
NspI RCATGY 2 cut(s) 1009, 1263
PaeI GCATGC 1 cut(s) 1263
PaeR7I CTCGAG 1 cut(s) 411
PagI TCATGA 1 cut(s) 1477
PciI ACATGT 1 cut(s) 1005
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 347
PfeI GAWTC 5 cut(s) 167, 1223, 1492, 1568, 1751
PflFI GACNNNGTC 1 cut(s) 738
PflMI CCANNNNNTGG 1 cut(s) 1302
PinAI ACCGGT 1 cut(s) 365
PleI GAGTC 2 cut(s) 1157, 1600
PpsI GAGTC 2 cut(s) 1157, 1600
Ppu21I YACGTR 1 cut(s) 1772
PpuMI RGGWCCY 1 cut(s) 1118
PscI ACATGT 1 cut(s) 1005
Psp124BI GAGCTC 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 1118
Psp6I CCWGG 4 cut(s) 678, 691, 1024, 1387
PspFI CCCAGC 1 cut(s) 606
PspGI CCWGG 4 cut(s) 678, 691, 1024, 1387
PspN4I GGNNCC 2 cut(s) 677, 1120
PspPI GGNCC 4 cut(s) 127, 396, 1028, 1118
PspPPI RGGWCCY 1 cut(s) 1118
PspXI VCTCGAGB 1 cut(s) 411
PstI CTGCAG 1 cut(s) 1338
PsuI RGATCY 1 cut(s) 745
PsyI GACNNNGTC 1 cut(s) 738
RruI TCGCGA 1 cut(s) 620
RsaI GTAC 3 cut(s) 309, 1393, 1629
RsaNI GTAC 3 cut(s) 308, 1392, 1628
SacI GAGCTC 1 cut(s) 67
SaqAI TTAA 6 cut(s) 288, 473, 701, 804, 1043, 1412
Sau3AI GATC 7 cut(s) 244, 276, 745, 1246, 1309, 1483, 1638
Sau96I GGNCC 4 cut(s) 127, 396, 1028, 1118
SchI GAGTC 2 cut(s) 1157, 1600
ScrFI CCNGG 7 cut(s) 562, 680, 693, 849, 1026, 1389, 1632
SduI GDGCHC 5 cut(s) 67, 678, 976, 1064, 1290
SfaNI GCATC 4 cut(s) 559, 762, 1059, 1788
SfcI CTRYAG 1 cut(s) 1334
Sfr274I CTCGAG 1 cut(s) 411
SgrAI CRCCGGYG 1 cut(s) 365
SinI GGWCC 3 cut(s) 396, 1028, 1118
SlaI CTCGAG 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 411, 1016
SmoI CTYRAG 2 cut(s) 411, 1016
SphI GCATGC 1 cut(s) 1263
Sse9I AATT 7 cut(s) 985, 1102, 1340, 1399, 1447, 1557, 1746
SspMI CTAG 4 cut(s) 776, 1035, 1548, 1590
SstI GAGCTC 1 cut(s) 67
StyD4I CCNGG 7 cut(s) 560, 678, 691, 847, 1024, 1387, 1630
StyI CCWWGG 3 cut(s) 130, 775, 1313
TaaI ACNGT 4 cut(s) 80, 577, 864, 1525
TaiI ACGT 3 cut(s) 309, 1705, 1774
TaqI TCGA 8 cut(s) 120, 243, 279, 412, 1073, 1161, 1249, 1486
TasI AATT 7 cut(s) 985, 1102, 1340, 1399, 1447, 1557, 1746
TauI GCSGC 5 cut(s) 38, 98, 128, 1094, 1235
TfiI GAWTC 5 cut(s) 167, 1223, 1492, 1568, 1751
Tru1I TTAA 6 cut(s) 288, 473, 701, 804, 1043, 1412
Tru9I TTAA 6 cut(s) 288, 473, 701, 804, 1043, 1412
TscAI CASTG 1 cut(s) 869
TseFI GTSAC 3 cut(s) 707, 810, 935
TseI GCWGC 6 cut(s) 603, 784, 1047, 1333, 1336, 1661
Tsp45I GTSAC 3 cut(s) 707, 810, 935
TspDTI ATGAA 3 cut(s) 848, 1494, 1751
TspGWI ACGGA 2 cut(s) 126, 638
TspRI CASTG 1 cut(s) 869
Tth111I GACNNNGTC 1 cut(s) 738
Van91I CCANNNNNTGG 1 cut(s) 1302
VneI GTGCAC 2 cut(s) 972, 1060
VpaK11BI GGWCC 3 cut(s) 396, 1028, 1118
XapI RAATTY 3 cut(s) 1102, 1447, 1557
XceI RCATGY 2 cut(s) 1009, 1263
XcmI CCANNNNNNNNNTGG 1 cut(s) 1102
XhoI CTCGAG 1 cut(s) 411
XmaJI CCTAGG 1 cut(s) 775
XspI CTAG 4 cut(s) 776, 1035, 1548, 1590
Zsp2I ATGCAT 1 cut(s) 1265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.