Rmu_sc0000795.1_g000005

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000795.1
OG0000591
Physical Location & Seq
Forward (+)
18629 .. 19444
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000795.1_g000005.1.cds

Sequence Viewer

Length: 543 bp
atgcattggcgagcatgggatgatctatgtaaacctaagaacttgggggacatgacttttcgacacttgtttgcattcaatcttgccatgttagctaaacaaggatggtgtttgatacaacaaccagattctttgctttgttggcttctgaaggcgatctattttcctcattgtagcttttgggaggctgatataggatcttctccatcttatgcttggagaagtatcatgcatggtagggatgtgctcaaggcaggcattcggcgtcttgtaggtagaatattgggggagattactactgaccacaatcctagttccaagctctggaatcaaatttggaaagctcctgtacctgggaaggtaaaagtttgtgtgtggaaggctgcttcaaatatcctacctacatggagtcggcttagcgagcgtggtattgatcttgatacccaatgcccattctgtgatgaggaagttgaatctcctctacatgcattacgggattgcactcatgccaagtctttttttgcaattggcgaatctccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

180

Amino Acids

20.59

Weight (kDa)

8.44

Isoelectric Point (pI)

59.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 324
AclWI GGATC 1 cut(s) 205
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 265
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 2 cut(s) 324, 353
AgsI TTSAA 3 cut(s) 79, 390, 473
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 4 cut(s) 95, 177, 322, 344
AluI AGCT 4 cut(s) 95, 177, 322, 344
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 370
BccI CCATC 2 cut(s) 99, 214
BciT130I CCWGG 1 cut(s) 354
BfaI CTAG 2 cut(s) 312, 541
BisI GCNGC 1 cut(s) 384
BlpI GCTNAGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 354
Bpu1102I GCTNAGC 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 353
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 3 cut(s) 25, 110, 247
BseLI CCNNNNNNNGG 2 cut(s) 324, 353
BseRI GAGGAG 1 cut(s) 468
BseXI GCAGC 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 2 cut(s) 324, 353
BsmFI GGGAC 1 cut(s) 62
BsmI GAATGC 2 cut(s) 74, 258
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 4 cut(s) 22, 156, 197, 433
Bsp1720I GCTNAGC 1 cut(s) 416
BspPI GGATC 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 4 cut(s) 22, 156, 197, 433
BssNI GRCGYC 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 354
BstACI GRCGYC 1 cut(s) 265
BstC8I GCNNGC 3 cut(s) 12, 256, 422
BstDEI CTNAG 2 cut(s) 36, 416
BstF5I GGATG 3 cut(s) 25, 110, 247
BstKTI GATC 4 cut(s) 25, 159, 200, 436
BstMBI GATC 4 cut(s) 22, 156, 197, 433
BstMWI GCNNNNNNNGC 3 cut(s) 92, 142, 421
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 370
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BtsCI GGATG 3 cut(s) 25, 110, 247
Cac8I GCNNGC 3 cut(s) 12, 256, 422
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 350
CviAII CATG 8 cut(s) 15, 52, 88, 229, 233, 405, 485, 506
CviJI RGCY 8 cut(s) 95, 145, 177, 188, 322, 344, 383, 415
CviKI_1 RGCY 8 cut(s) 95, 145, 177, 188, 322, 344, 383, 415
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 2 cut(s) 36, 416
DpnI GATC 4 cut(s) 24, 158, 199, 435
DpnII GATC 4 cut(s) 22, 156, 197, 433
Eco57I CTGAAG 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 352
EcoT22I ATGCAT 3 cut(s) 6, 234, 490
FaeI CATG 8 cut(s) 18, 55, 91, 232, 236, 408, 488, 509
FaqI GGGAC 1 cut(s) 62
FatI CATG 8 cut(s) 14, 51, 87, 228, 232, 404, 484, 505
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 3 cut(s) 32, 117, 254
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 2 cut(s) 312, 541
GluI GCNGC 1 cut(s) 384
HgaI GACGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 8 cut(s) 18, 55, 91, 232, 236, 408, 488, 509
HinfI GANTC 5 cut(s) 128, 328, 409, 473, 533
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 325, 437
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 145, 352, 373
HpyCH4V TGCA 6 cut(s) 4, 74, 232, 488, 501, 524
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 142, 421
HpyF3I CTNAG 2 cut(s) 36, 416
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 8 cut(s) 18, 55, 91, 232, 236, 408, 488, 509
Kzo9I GATC 4 cut(s) 22, 156, 197, 433
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 6 cut(s) 138, 240, 310, 339, 360, 366
Lsp1109I GCAGC 1 cut(s) 370
MaeI CTAG 2 cut(s) 312, 541
MalI GATC 4 cut(s) 24, 158, 199, 435
MboI GATC 4 cut(s) 22, 156, 197, 433
MboII GAAGA 1 cut(s) 192
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 2 cut(s) 333, 525
MlyI GAGTC 1 cut(s) 418
MnlI CCTC 4 cut(s) 177, 178, 457, 489
Mph1103I ATGCAT 3 cut(s) 6, 234, 490
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 525
Mva1269I GAATGC 2 cut(s) 74, 258
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 3 cut(s) 92, 142, 421
NdeII GATC 4 cut(s) 22, 156, 197, 433
NlaIII CATG 8 cut(s) 18, 55, 91, 232, 236, 408, 488, 509
NsiI ATGCAT 3 cut(s) 6, 234, 490
NspI RCATGY 1 cut(s) 488
PctI GAATGC 2 cut(s) 74, 258
PfeI GAWTC 4 cut(s) 128, 328, 473, 533
PflMI CCANNNNNTGG 1 cut(s) 324
PkrI GCNGC 1 cut(s) 385
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PsuI RGATCY 1 cut(s) 197
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 4 cut(s) 22, 156, 197, 433
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 249
SetI ASST 9 cut(s) 37, 97, 179, 277, 324, 346, 355, 363, 403
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 2 cut(s) 333, 525
SspI AATATT 1 cut(s) 282
SspMI CTAG 2 cut(s) 312, 541
StyD4I CCNGG 1 cut(s) 352
TaqI TCGA 1 cut(s) 61
TasI AATT 2 cut(s) 333, 525
TfiI GAWTC 4 cut(s) 128, 328, 473, 533
TseI GCWGC 1 cut(s) 383
Van91I CCANNNNNTGG 1 cut(s) 324
XapI RAATTY 1 cut(s) 333
XceI RCATGY 1 cut(s) 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 213
XspI CTAG 2 cut(s) 312, 541
Zsp2I ATGCAT 3 cut(s) 6, 234, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.