AT4G03566

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000591
Physical Location & Seq
Reverse (-)
1588564 .. 1589230
667 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03566.1

Sequence Viewer

Length: 453 bp
ATGAGTAACGATGGTTTATCTCTTTCTCTGAGAATGGCCAATCCATGGTTACTTTGGGGAATTTGGAAACATCGGAACACAACGGTATTGGCGGGAACACAAGGCGACTTAAATGCACTTATAGCTCATGCTTTTGAAGAATCTAAGGTGTGGAACAAGTTAAGGACGATGCCAACCCAGTCTGTAACTCGTCTTTCGCTGAATCCTAGATGTGCAGTTAGATGGACTAAGCCACCACTAGATACGCTTAAATGTAATATACATGTTTCTTGGCTTAATGATGTTCACATCTGTGGCGGAGCTTGGATTGTCAGGAATCATCATGGGGACGCTGCTTTTCATGCCCGAGAAATGTTTTTACCAGCGTCAAATCGTATTGCTGCGGAGTTGAGAGGGGTTTTATGGGTCTTACACAGTTTACGTGACCTACACTTAGATAACATTGAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

150

Amino Acids

17.07

Weight (kDa)

9.35

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 45
AciI CCGC 3 cut(s) 92, 297, 383
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 45
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 1 cut(s) 137
AleI CACNNNNGTG 1 cut(s) 291
AluBI AGCT 2 cut(s) 125, 302
AluI AGCT 2 cut(s) 125, 302
Ama87I CYCGRG 1 cut(s) 345
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 332, 380
ApoI RAATTY 1 cut(s) 60
AvaI CYCGRG 1 cut(s) 345
BalI TGGCCA 1 cut(s) 38
BbvI GCAGC 2 cut(s) 319, 367
BccI CCATC 2 cut(s) 5, 216
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BfaI CTAG 2 cut(s) 207, 239
BisI GCNGC 2 cut(s) 333, 381
BlsI GCNGC 2 cut(s) 334, 382
BmeT110I CYCGRG 1 cut(s) 345
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 172
BsaAI YACGTR 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 2 cut(s) 319, 367
BsgI GTGCAG 1 cut(s) 234
BshFI GGCC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 345
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 345
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 3 cut(s) 92, 297, 383
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 21
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 85, 416
BstBAI YACGTR 1 cut(s) 422
BstDEI CTNAG 4 cut(s) 29, 144, 228, 433
BstDSI CCRYGG 1 cut(s) 44
BstMWI GCNNNNNNNGC 2 cut(s) 122, 341
BstNSI RCATGY 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 319, 367
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 44
CseI GACGC 2 cut(s) 338, 354
CviAII CATG 5 cut(s) 45, 128, 263, 323, 341
CviJI RGCY 5 cut(s) 38, 125, 232, 274, 302
CviKI_1 RGCY 5 cut(s) 38, 125, 232, 274, 302
DdeI CTNAG 4 cut(s) 29, 144, 228, 433
EaeI YGGCCR 1 cut(s) 36
EciI GGCGGA 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 5 cut(s) 48, 131, 266, 326, 344
FaiI YATR 9 cut(s) 46, 122, 129, 260, 264, 324, 342, 403, 451
FaqI GGGAC 1 cut(s) 341
FatI CATG 5 cut(s) 44, 127, 262, 322, 340
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 333, 381
Fsp4HI GCNGC 2 cut(s) 333, 381
FspBI CTAG 2 cut(s) 207, 239
GluI GCNGC 2 cut(s) 333, 381
HaeIII GGCC 1 cut(s) 38
HgaI GACGC 2 cut(s) 338, 354
Hin1II CATG 5 cut(s) 48, 131, 266, 326, 344
HinfI GANTC 3 cut(s) 140, 202, 316
Hpy166II GTNNAC 2 cut(s) 286, 419
Hpy188I TCNGA 2 cut(s) 30, 75
Hpy188III TCNNGA 1 cut(s) 313
Hpy8I GTNNAC 2 cut(s) 286, 419
HpyCH4III ACNGT 2 cut(s) 85, 416
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 2 cut(s) 116, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 341
HpyF3I CTNAG 4 cut(s) 29, 144, 228, 433
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 5 cut(s) 48, 131, 266, 326, 344
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 3 cut(s) 191, 298, 375
Lsp1109I GCAGC 2 cut(s) 319, 367
LweI GCATC 1 cut(s) 159
MaeI CTAG 2 cut(s) 207, 239
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 4 cut(s) 5, 48, 184, 422
MboII GAAGA 1 cut(s) 149
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 1 cut(s) 60
MluNI TGGCCA 1 cut(s) 38
MnlI CCTC 1 cut(s) 386
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
MseI TTAA 4 cut(s) 110, 161, 249, 276
MslI CAYNNNNRTG 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 122, 341
NcoI CCATGG 1 cut(s) 44
NlaIII CATG 5 cut(s) 48, 131, 266, 326, 344
NmuCI GTSAC 1 cut(s) 422
NspI RCATGY 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 291
PciI ACATGT 1 cut(s) 262
PfeI GAWTC 3 cut(s) 140, 202, 316
PflMI CCANNNNNTGG 1 cut(s) 45
PkrI GCNGC 2 cut(s) 334, 382
Ppu21I YACGTR 1 cut(s) 422
PscI ACATGT 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 4 cut(s) 110, 161, 249, 276
SatI GCNGC 2 cut(s) 333, 381
SetI ASST 5 cut(s) 127, 150, 304, 424, 429
SfaNI GCATC 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 1 cut(s) 60
SsiI CCGC 3 cut(s) 92, 297, 383
SspMI CTAG 2 cut(s) 207, 239
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 2 cut(s) 85, 416
TaiI ACGT 1 cut(s) 424
TasI AATT 1 cut(s) 60
TfiI GAWTC 3 cut(s) 140, 202, 316
Tru1I TTAA 4 cut(s) 110, 161, 249, 276
Tru9I TTAA 4 cut(s) 110, 161, 249, 276
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 2 cut(s) 332, 380
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 1 cut(s) 329
Van91I CCANNNNNTGG 1 cut(s) 45
XapI RAATTY 1 cut(s) 60
XceI RCATGY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 51
XspI CTAG 2 cut(s) 207, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.