Rh4DG035800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000591
Physical Location & Seq
Forward (+)
5951289 .. 5952568
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG035800.1

Sequence Viewer

Length: 390 bp
ATGGCTGTGGGGATCACGAGGGTTAAAGAGGATTGGCTGGACGTCGAGAGCCTCAGTCGTCGGAACAATCTGGTATTGTCATCCTCGTCGTCATTATCCACCGGTGACAAAAGGTGGAAGTGGGCCGCAAGGACCAGATCAAGCGTTCGAGGTGGGATTGTTGGTGGTGGGTGGTCTGGTTTGGGGTTGCAGGTGCGGGATTTGGGTTTACCCCAGAGCTTTTCCGGCTTGTTTGGTGGCGGTGCGCTGGTGGTTGTTAAGGTCAGTGCGGTGTCGTTGCGTTGGCTCTTGCACGCCGGGGTTGGTGCGCAAGTAGCAATGGAGGGACGATGGAGGCGCTGCTGGGTTGCTGTCGCGACGAAGGTGGTCTTGCAGGATTTGGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.77

Weight (kDa)

11.36

Isoelectric Point (pI)

63.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 181
AatII GACGTC 1 cut(s) 45
Acc16I TGCGCA 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 181
AccII CGCG 1 cut(s) 356
AciI CCGC 4 cut(s) 126, 196, 240, 269
AclWI GGATC 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 42
AgeI ACCGGT 1 cut(s) 101
AluBI AGCT 2 cut(s) 219, 386
AluI AGCT 2 cut(s) 219, 386
AlwI GGATC 1 cut(s) 20
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 339
AsiGI ACCGGT 1 cut(s) 101
AspLEI GCGC 3 cut(s) 247, 310, 339
AspS9I GGNCC 2 cut(s) 123, 132
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 132
BauI CACGAG 1 cut(s) 16
BbvI GCAGC 1 cut(s) 326
BccI CCATC 1 cut(s) 324
BcnI CCSGG 1 cut(s) 298
BfoI RGCGCY 1 cut(s) 340
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 2 cut(s) 126, 340
BlsI GCNGC 2 cut(s) 127, 341
Bme1390I CCNGG 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 2 cut(s) 123, 132
BmrFI CCNGG 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 298
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 326
BseYI CCCAGC 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 356
BshFI GGCC 1 cut(s) 125
BshTI ACCGGT 1 cut(s) 101
BsiSI CCGG 3 cut(s) 102, 225, 297
BslFI GGGAC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 339
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 12, 137
Bsp68I TCGCGA 1 cut(s) 356
BspACI CCGC 4 cut(s) 126, 196, 240, 269
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 66
BspFNI CGCG 1 cut(s) 356
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 12, 137
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 16
Bst2BI CACGAG 1 cut(s) 16
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 53, 387
BstF5I GGATG 1 cut(s) 80
BstFNI CGCG 1 cut(s) 356
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 3 cut(s) 247, 310, 339
BstKTI GATC 2 cut(s) 15, 140
BstMBI GATC 2 cut(s) 12, 137
BstMWI GCNNNNNNNGC 2 cut(s) 225, 314
BstSCI CCNGG 1 cut(s) 296
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 326
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 271
BtuMI TCGCGA 1 cut(s) 356
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 294
CfoI GCGC 3 cut(s) 247, 310, 339
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 123, 132
CspAI ACCGGT 1 cut(s) 101
CviJI RGCY 8 cut(s) 5, 37, 51, 125, 219, 228, 286, 386
CviKI_1 RGCY 8 cut(s) 5, 37, 51, 125, 219, 228, 286, 386
DdeI CTNAG 2 cut(s) 53, 387
DpnI GATC 2 cut(s) 14, 139
DpnII GATC 2 cut(s) 12, 137
Eco47I GGWCC 1 cut(s) 132
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FaqI GGGAC 1 cut(s) 339
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 126, 340
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 2 cut(s) 126, 340
FspI TGCGCA 1 cut(s) 309
GlaI GCGC 3 cut(s) 246, 309, 338
GluI GCNGC 2 cut(s) 126, 340
GsaI CCCAGC 1 cut(s) 346
HaeII RGCGCY 1 cut(s) 340
HaeIII GGCC 1 cut(s) 125
HapII CCGG 3 cut(s) 102, 225, 297
HhaI GCGC 3 cut(s) 247, 310, 339
Hin1I GRCGYC 1 cut(s) 42
Hin6I GCGC 3 cut(s) 245, 308, 337
HinP1I GCGC 3 cut(s) 245, 308, 337
HpaII CCGG 3 cut(s) 102, 225, 297
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 3 cut(s) 16, 46, 355
Hpy8I GTNNAC 1 cut(s) 209
Hpy99I CGWCG 4 cut(s) 47, 63, 91, 361
HpyAV CCTTC 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 3 cut(s) 190, 292, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 314
HpyF3I CTNAG 2 cut(s) 53, 387
HpySE526I ACGT 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 42
HspAI GCGC 3 cut(s) 245, 308, 337
Kzo9I GATC 2 cut(s) 12, 137
LmnI GCTCC 1 cut(s) 383
Lsp1109I GCAGC 1 cut(s) 326
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 104
MalI GATC 2 cut(s) 14, 139
MboI GATC 2 cut(s) 12, 137
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 7 cut(s) 12, 22, 62, 94, 143, 316, 327
MseI TTAA 2 cut(s) 24, 258
MspI CCGG 3 cut(s) 102, 225, 297
MspR9I CCNGG 1 cut(s) 298
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 225, 314
NciI CCSGG 1 cut(s) 298
NdeII GATC 2 cut(s) 12, 137
NmuCI GTSAC 1 cut(s) 104
NruI TCGCGA 1 cut(s) 356
NsbI TGCGCA 1 cut(s) 309
PaqCI CACCTGC 1 cut(s) 181
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 2 cut(s) 127, 341
PspFI CCCAGC 1 cut(s) 342
PspPI GGNCC 2 cut(s) 123, 132
RruI TCGCGA 1 cut(s) 356
SaqAI TTAA 2 cut(s) 24, 258
SatI GCNGC 2 cut(s) 126, 340
Sau3AI GATC 2 cut(s) 12, 137
Sau96I GGNCC 2 cut(s) 123, 132
ScrFI CCNGG 1 cut(s) 298
SetI ASST 8 cut(s) 45, 116, 154, 195, 221, 264, 366, 388
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 1 cut(s) 132
SsiI CCGC 4 cut(s) 126, 196, 240, 269
StyD4I CCNGG 1 cut(s) 296
TaiI ACGT 1 cut(s) 45
TaqI TCGA 2 cut(s) 45, 148
TauI GCSGC 1 cut(s) 128
Tru1I TTAA 2 cut(s) 24, 258
Tru9I TTAA 2 cut(s) 24, 258
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 339
Tsp45I GTSAC 1 cut(s) 104
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 132
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.